Wall clock time and date at job start Mon Mar 30 2020 19:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00115 * 2 1 4 4 H 1.48500 * 109.46855 * 270.00270 * 3 2 1 5 5 H 1.48501 * 109.46953 * 29.99885 * 3 2 1 6 6 H 1.48501 * 109.47052 * 150.00004 * 3 2 1 7 7 C 1.38818 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99918 * 197.37128 * 7 2 1 9 9 N 1.36944 * 119.99684 * 17.36054 * 7 2 1 10 10 C 1.46922 * 120.62968 * 207.68812 * 9 7 2 11 11 C 1.53196 * 108.77589 * 233.59170 * 10 9 7 12 12 C 1.53041 * 109.31260 * 305.36788 * 11 10 9 13 13 N 1.46900 * 109.46087 * 181.38682 * 12 11 10 14 14 C 1.46896 * 110.99880 * 154.96837 * 13 12 11 15 15 C 1.53005 * 109.46817 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.46762 * 180.02562 * 15 14 13 17 17 H 1.08996 * 110.43755 * 305.70035 * 16 15 14 18 18 C 1.54812 * 110.48513 * 183.15672 * 16 15 14 19 19 C 1.55341 * 101.93428 * 220.33834 * 18 16 15 20 20 O 1.44385 * 103.49915 * 37.05503 * 19 18 16 21 21 C 1.43738 * 106.97402 * 319.90546 * 20 19 18 22 22 C 1.53036 * 109.52913 * 61.36909 * 12 11 10 23 23 C 1.46921 * 120.62734 * 27.67175 * 9 7 2 24 24 H 0.96998 * 120.00254 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.59137 * 113.80432 * 10 9 7 26 26 H 1.09004 * 109.58782 * 353.37479 * 10 9 7 27 27 H 1.09001 * 109.49916 * 185.41222 * 11 10 9 28 28 H 1.09005 * 109.49490 * 65.31707 * 11 10 9 29 29 H 1.09003 * 109.45677 * 301.35781 * 12 11 10 30 30 H 1.00899 * 110.99933 * 31.01060 * 13 12 11 31 31 H 1.09004 * 109.46830 * 60.00085 * 14 13 12 32 32 H 1.08998 * 109.47472 * 299.99857 * 14 13 12 33 33 H 1.08996 * 109.46751 * 60.00556 * 15 14 13 34 34 H 1.08998 * 109.47307 * 300.00355 * 15 14 13 35 35 H 1.09000 * 110.90623 * 338.51122 * 18 16 15 36 36 H 1.09003 * 110.90802 * 102.11253 * 18 16 15 37 37 H 1.09000 * 110.63996 * 278.54193 * 19 18 16 38 38 H 1.09003 * 110.72247 * 155.61069 * 19 18 16 39 39 H 1.08996 * 109.88346 * 267.08790 * 21 20 19 40 40 H 1.09002 * 109.87962 * 145.93793 * 21 20 19 41 41 H 1.09001 * 109.50053 * 58.57876 * 22 12 11 42 42 H 1.08997 * 109.49910 * 178.68248 * 22 12 11 43 43 H 1.09001 * 109.58199 * 246.18969 * 23 9 7 44 44 H 1.08994 * 109.59467 * 6.61937 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0532 -1.2237 0.2787 9 7 1.3722 -2.3610 -0.3549 10 6 1.8191 -3.6549 0.1787 11 6 2.0740 -4.6095 -0.9919 12 6 0.8183 -4.6888 -1.8632 13 7 1.0479 -5.6290 -2.9683 14 6 -0.2201 -6.1877 -3.4561 15 6 0.0591 -7.1595 -4.6044 16 6 -1.2616 -7.7410 -5.1128 17 1 -1.8221 -8.1875 -4.2915 18 6 -1.0009 -8.7879 -6.2231 19 6 -2.1374 -8.4735 -7.2343 20 8 -2.2440 -7.0345 -7.1849 21 6 -2.0994 -6.6500 -5.8075 22 6 0.5008 -3.3032 -2.4302 23 6 0.2277 -2.3337 -1.2758 24 1 -0.4850 0.8400 0.0004 25 1 1.0468 -4.0693 0.8266 26 1 2.7399 -3.5180 0.7457 27 1 2.3132 -5.6010 -0.6074 28 1 2.9079 -4.2392 -1.5884 29 1 -0.0209 -5.0353 -1.2600 30 1 1.6840 -6.3622 -2.6930 31 1 -0.8601 -5.3801 -3.8115 32 1 -0.7198 -6.7172 -2.6449 33 1 0.6993 -7.9671 -4.2493 34 1 0.5587 -6.6297 -5.4154 35 1 -0.0218 -8.6371 -6.6777 36 1 -1.0949 -9.8011 -5.8322 37 1 -3.0716 -8.9386 -6.9193 38 1 -1.8644 -8.8040 -8.2365 39 1 -3.0802 -6.5803 -5.3371 40 1 -1.5859 -5.6908 -5.7423 41 1 1.3495 -2.9453 -3.0129 42 1 -0.3800 -3.3648 -3.0693 43 1 -0.6744 -2.6405 -0.7464 44 1 0.0984 -1.3253 -1.6684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615131678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:43 Heat of formation + Delta-G solvation = -39.325040 kcal Electronic energy + Delta-G solvation = -20896.259586 eV Core-core repulsion = 17848.257828 eV Total energy + Delta-G solvation = -3048.001758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.72453 -38.07128 -35.72123 -33.76788 -32.03113 -30.46364 -29.89082 -29.14726 -26.95863 -24.57603 -23.49838 -22.33784 -21.83141 -21.03334 -20.41832 -18.98992 -16.94553 -16.69601 -16.28724 -15.50210 -15.18012 -14.77226 -14.43751 -14.23166 -13.87190 -13.61999 -13.43502 -13.04500 -12.91406 -12.45951 -12.29617 -11.95858 -11.94083 -11.58782 -11.44234 -11.13615 -10.96825 -10.92541 -10.83624 -10.70008 -10.57220 -10.16576 -10.15884 -9.88002 -9.84672 -9.52157 -9.45592 -8.44958 -8.12720 -6.64715 -5.75374 -3.17303 3.40965 3.47669 3.48683 3.73361 4.15443 4.29430 4.52952 4.63693 4.71045 4.94437 4.96505 5.09612 5.17445 5.37082 5.42555 5.42958 5.45700 5.50759 5.54970 5.58191 5.65600 5.69781 5.77068 5.82111 5.93338 6.07242 6.12984 6.18041 6.36391 6.45470 6.63604 6.66346 6.67449 6.78989 6.81466 7.01537 7.40004 7.44209 7.64637 7.72677 7.83604 8.48812 9.25024 9.88631 10.45325 11.33227 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033940 B = 0.003353 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.786415 B = 8349.407570 C = 8861.328085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.148 3.852 11 C -0.133 4.133 12 C 0.096 3.904 13 N -0.689 5.689 14 C 0.057 3.943 15 C -0.107 4.107 16 C -0.122 4.122 17 H 0.081 0.919 18 C -0.150 4.150 19 C 0.045 3.955 20 O -0.379 6.379 21 C 0.047 3.953 22 C -0.124 4.124 23 C 0.170 3.830 24 H 0.253 0.747 25 H 0.015 0.985 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.332 0.668 31 H 0.073 0.927 32 H 0.024 0.976 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.044 0.956 43 H 0.014 0.986 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 -17.946 -10.083 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.021 3.979 11 C -0.173 4.173 12 C -0.013 4.013 13 N -0.319 5.319 14 C -0.072 4.072 15 C -0.145 4.145 16 C -0.141 4.141 17 H 0.100 0.900 18 C -0.188 4.188 19 C -0.032 4.032 20 O -0.298 6.298 21 C -0.029 4.029 22 C -0.164 4.164 23 C 0.044 3.956 24 H 0.063 0.937 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.150 0.850 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.661 -17.146 -10.705 20.388 hybrid contribution 0.123 0.023 0.969 0.977 sum -2.538 -17.123 -9.737 19.860 Atomic orbital electron populations 1.70037 1.05270 1.25452 1.54044 1.25035 0.95286 0.98411 1.00999 0.86282 0.79080 0.83657 0.77718 1.21414 1.21813 1.20462 1.19208 0.92708 0.84931 1.41250 0.91679 1.44068 1.35853 1.01327 1.50236 1.20853 0.97547 0.86940 0.92570 1.22214 0.97534 0.98855 0.98666 1.21485 0.96846 0.93285 0.89665 1.60617 1.12435 1.20235 1.38627 1.22026 0.92386 0.96951 0.95851 1.21612 0.95689 0.98376 0.98817 1.22554 0.97457 0.95816 0.98251 0.90038 1.23263 1.00079 0.99259 0.96208 1.23599 0.97357 0.82091 1.00150 1.88886 1.94117 1.21015 1.25812 1.23355 0.99026 0.98754 0.81784 1.22194 1.00200 0.94416 0.99597 1.20807 0.88405 0.98453 0.87925 0.93672 0.96737 0.92682 0.93599 0.91497 0.94790 0.85037 0.90904 0.95746 0.91912 0.90620 0.90199 0.90342 0.92385 0.89152 0.92428 0.89095 0.92121 0.93778 0.96785 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 11.19 55.49 0.62 -25.96 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -7.02 9.59 -15.05 -0.14 -7.16 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -15.14 2.99 -172.32 -0.52 -15.66 16 10 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 11 C -0.13 -2.34 5.36 -26.61 -0.14 -2.48 16 12 C 0.10 1.66 2.46 -67.67 -0.17 1.49 16 13 N -0.69 -9.84 6.31 -106.68 -0.67 -10.51 16 14 C 0.06 0.70 5.32 -3.82 -0.02 0.68 16 15 C -0.11 -1.06 4.67 -26.73 -0.12 -1.18 16 16 C -0.12 -1.07 3.05 -89.09 -0.27 -1.35 16 17 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 18 C -0.15 -1.14 6.73 -24.53 -0.17 -1.30 16 19 C 0.04 0.37 7.73 38.40 0.30 0.67 16 20 O -0.38 -4.45 11.52 -35.23 -0.41 -4.86 16 21 C 0.05 0.49 6.94 37.73 0.26 0.75 16 22 C -0.12 -2.49 5.59 -26.61 -0.15 -2.64 16 23 C 0.17 4.17 5.31 -3.71 -0.02 4.15 16 24 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 27 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.03 0.61 7.80 -51.93 -0.40 0.21 16 30 H 0.33 4.23 8.33 -39.29 -0.33 3.91 16 31 H 0.07 0.96 6.26 -51.93 -0.33 0.64 16 32 H 0.02 0.29 8.05 -51.93 -0.42 -0.12 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 1.01 6.83 -51.93 -0.35 0.66 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.04 0.82 7.42 -51.93 -0.39 0.44 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -30.24 337.49 -9.64 -39.88 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.97 Total: 0.37 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.76 Total: -5.31 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.57 Total: -52.13 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.41 Total: -4.86 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.24 -9.64 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615131678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.555 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds