Wall clock time and date at job start Mon Mar 30 2020 19:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47154 * 2 1 4 4 H 1.08991 * 110.01669 * 306.38954 * 3 2 1 5 5 C 1.54266 * 110.07166 * 67.81220 * 3 2 1 6 6 C 1.54892 * 104.19661 * 142.91400 * 5 3 2 7 7 C 1.54887 * 102.74755 * 322.05866 * 6 5 3 8 8 C 1.53872 * 110.02977 * 184.99857 * 3 2 1 9 9 H 1.09000 * 110.03498 * 0.02562 * 8 3 2 10 10 C 1.50706 * 110.03253 * 121.38388 * 8 3 2 11 11 O 1.20830 * 119.99594 * 0.02562 * 10 8 3 12 12 O 1.34222 * 120.00024 * 179.72349 * 10 8 3 13 13 C 1.45201 * 116.99867 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47142 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46887 * 299.99358 * 14 13 12 16 16 C 1.53001 * 109.47642 * 59.99845 * 14 13 12 17 17 C 1.50705 * 109.47272 * 179.97438 * 14 13 12 18 18 H 1.08004 * 119.99488 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00064 * 179.97438 * 17 14 13 20 20 N 1.31506 * 120.00054 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99721 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47437 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46862 * 120.00343 * 21 19 17 24 24 H 1.48501 * 109.47170 * 239.99851 * 21 19 17 25 25 H 1.09003 * 109.47083 * 299.99995 * 1 2 3 26 26 H 1.09004 * 109.46907 * 59.99553 * 1 2 3 27 27 H 1.08994 * 109.47479 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47083 * 240.00005 * 2 1 3 29 29 H 1.08996 * 109.47204 * 120.00421 * 2 1 3 30 30 H 1.09001 * 110.48544 * 261.59317 * 5 3 2 31 31 H 1.08999 * 110.48609 * 24.23310 * 5 3 2 32 32 H 1.09001 * 110.75395 * 80.36806 * 6 5 3 33 33 H 1.08998 * 110.75596 * 203.55407 * 6 5 3 34 34 H 1.09006 * 110.48323 * 279.26368 * 7 6 5 35 35 H 1.08995 * 110.48858 * 156.62177 * 7 6 5 36 36 H 1.09009 * 109.46864 * 300.00062 * 13 12 10 37 37 H 1.09001 * 109.47271 * 60.00074 * 13 12 10 38 38 H 1.09004 * 109.46774 * 60.00559 * 15 14 13 39 39 H 1.09002 * 109.47088 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.47421 * 300.00264 * 15 14 13 41 41 H 1.09001 * 109.46839 * 59.99859 * 16 14 13 42 42 H 1.08993 * 109.47264 * 179.97438 * 16 14 13 43 43 H 1.09003 * 109.46377 * 300.00307 * 16 14 13 44 44 H 0.97001 * 119.99887 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5916 1.9968 -0.8244 5 6 1.7006 2.1241 1.3417 6 6 2.9290 3.0214 1.6333 7 6 4.1125 2.1506 1.1435 8 6 3.5735 1.4593 -0.1260 9 1 3.9544 0.4399 -0.1875 10 6 3.9824 2.2371 -1.3504 11 8 3.1398 2.7339 -2.0597 12 8 5.2827 2.3829 -1.6495 13 6 5.6030 3.1448 -2.8433 14 6 7.1218 3.2022 -3.0195 15 6 7.7516 3.8774 -1.7995 16 6 7.6733 1.7817 -3.1578 17 6 7.4542 3.9924 -4.2590 18 1 6.6615 4.4115 -4.8610 19 6 8.7703 4.1805 -4.6243 20 7 9.7355 3.6698 -3.8915 21 14 9.1823 5.1594 -6.1610 22 1 7.9266 5.6214 -6.8052 23 1 10.0113 6.3348 -5.7916 24 1 9.9366 4.2997 -7.1082 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.7999 2.7301 1.2445 31 1 1.5773 1.3790 2.1276 32 1 2.8721 3.9504 1.0659 33 1 3.0126 3.2269 2.7005 34 1 4.3786 1.4098 1.8975 35 1 4.9718 2.7759 0.9017 36 1 5.1546 2.6636 -3.7126 37 1 5.2099 4.1567 -2.7450 38 1 7.5111 3.3054 -0.9033 39 1 8.8335 3.9186 -1.9252 40 1 7.3587 4.8893 -1.7010 41 1 7.2245 1.3008 -4.0270 42 1 8.7551 1.8227 -3.2838 43 1 7.4327 1.2099 -2.2616 44 1 10.6615 3.8018 -4.1487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835302721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:44 Heat of formation + Delta-G solvation = -125.960560 kcal Electronic energy + Delta-G solvation = -21493.715352 eV Core-core repulsion = 18409.664045 eV Total energy + Delta-G solvation = -3084.051307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38719 -38.20155 -36.33018 -34.80736 -33.24914 -31.27700 -29.59023 -27.64809 -25.74092 -25.60901 -25.09778 -23.28467 -21.69566 -20.48455 -19.23603 -18.80770 -17.05836 -16.24492 -16.02330 -15.72687 -14.93185 -14.90773 -14.59770 -14.32021 -13.40301 -13.14731 -12.92737 -12.84796 -12.77121 -12.11749 -11.92090 -11.57713 -11.49369 -11.21469 -11.18103 -11.10034 -10.98721 -10.88206 -10.81486 -10.67704 -10.57186 -10.48223 -10.40668 -10.18408 -9.87874 -9.85148 -9.39167 -9.27343 -8.73746 -8.37521 -6.01527 -4.12964 2.68017 3.26429 3.26944 3.35564 3.41251 4.38793 4.39666 4.49879 4.73522 5.02416 5.07833 5.20742 5.24952 5.29597 5.37144 5.53577 5.54471 5.61020 5.62353 5.72981 5.84200 5.87219 5.97974 6.03017 6.09144 6.12825 6.13013 6.20774 6.22853 6.43234 6.49245 6.77186 6.99469 7.11669 7.15142 7.18860 7.42324 7.63263 7.70786 8.06015 8.17011 8.31878 8.41457 8.87255 9.52589 10.99697 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036074 B = 0.004018 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.999726 B = 6967.004449 C = 7180.750909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.092 4.092 4 H 0.098 0.902 5 C -0.115 4.115 6 C -0.129 4.129 7 C -0.114 4.114 8 C -0.085 4.085 9 H 0.106 0.894 10 C 0.459 3.541 11 O -0.520 6.520 12 O -0.347 6.347 13 C 0.084 3.916 14 C 0.069 3.931 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.511 4.511 18 H 0.057 0.943 19 C 0.068 3.932 20 N -0.882 5.882 21 Si 0.895 3.105 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.084 0.916 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.084 0.916 43 H 0.016 0.984 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.723 -5.842 11.185 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.110 4.110 4 H 0.116 0.884 5 C -0.153 4.153 6 C -0.166 4.166 7 C -0.151 4.151 8 C -0.105 4.105 9 H 0.124 0.876 10 C 0.302 3.698 11 O -0.410 6.410 12 O -0.263 6.263 13 C 0.011 3.989 14 C 0.069 3.931 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.134 4.134 20 N -0.520 5.520 21 Si 0.722 3.278 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.102 0.898 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.102 0.898 43 H 0.035 0.965 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.726 -5.685 10.936 17.716 hybrid contribution 0.226 0.591 -1.087 1.258 sum -12.499 -5.094 9.849 16.709 Atomic orbital electron populations 1.21768 0.95736 1.01349 1.01982 1.21633 0.96076 0.95728 1.01931 1.21942 0.92453 0.96993 0.99641 0.88351 1.22428 0.98026 0.98424 0.96400 1.22552 0.94555 0.98533 1.00964 1.22344 0.98645 0.99166 0.94976 1.21709 0.96979 1.00057 0.91715 0.87592 1.23496 0.81741 0.78388 0.86181 1.90576 1.52470 1.46725 1.51235 1.86514 1.25380 1.67821 1.46535 1.23648 1.00155 0.93024 0.82049 1.18246 0.85388 0.94375 0.95080 1.21759 1.04262 0.97123 0.95460 1.21761 1.04232 0.95891 0.96758 1.20989 0.92282 1.33380 1.08291 0.92497 1.24854 0.96187 0.95509 0.96807 1.69839 0.99495 1.44686 1.38014 0.86495 0.78441 0.79811 0.83014 1.19780 1.20954 1.20959 0.92650 0.92634 0.92947 0.91950 0.91880 0.91595 0.91424 0.91417 0.91213 0.90342 0.90132 0.92700 0.92684 0.96458 0.89764 0.95906 0.95902 0.89761 0.96456 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.77 37.16 0.36 -0.94 16 2 C -0.12 -1.13 5.06 -26.73 -0.14 -1.27 16 3 C -0.09 -1.07 2.52 -89.50 -0.23 -1.30 16 4 H 0.10 1.39 6.40 -51.93 -0.33 1.06 16 5 C -0.12 -1.13 5.54 -25.07 -0.14 -1.27 16 6 C -0.13 -1.36 6.91 -24.74 -0.17 -1.54 16 7 C -0.11 -1.33 6.36 -25.07 -0.16 -1.49 16 8 C -0.09 -1.13 3.06 -90.65 -0.28 -1.41 16 9 H 0.11 1.26 7.67 -51.93 -0.40 0.87 16 10 C 0.46 8.25 7.16 36.01 0.26 8.51 16 11 O -0.52 -10.58 14.96 -18.75 -0.28 -10.86 16 12 O -0.35 -7.04 8.64 -39.24 -0.34 -7.37 16 13 C 0.08 1.90 4.26 37.16 0.16 2.06 16 14 C 0.07 1.72 0.58 -155.66 -0.09 1.63 16 15 C -0.13 -3.11 8.11 37.16 0.30 -2.81 16 16 C -0.13 -3.13 8.11 37.16 0.30 -2.83 16 17 C -0.51 -13.80 8.01 -34.44 -0.28 -14.08 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.07 1.83 5.15 -17.82 -0.09 1.73 16 20 N -0.88 -24.06 9.35 55.43 0.52 -23.54 16 21 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.05 0.44 7.51 -51.93 -0.39 0.05 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.54 8.01 -51.93 -0.42 0.12 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.57 7.76 -51.93 -0.40 0.16 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.08 7.65 -51.93 -0.40 0.69 16 36 H 0.05 1.26 8.14 -51.92 -0.42 0.84 16 37 H 0.05 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 39 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 43 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 44 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 342.50 15.07 5.16 5.16 Total: -1.00 -28.41 342.50 -8.10 -36.51 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.96 Total: -0.82 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -0.18 Total: -15.00 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.52 Total: -23.54 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.62 Total: -18.23 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.41 -8.10 -36.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835302721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.447 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds