Wall clock time and date at job start Mon Mar 30 2020 19:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46773 * 2 1 4 4 C 1.50697 * 115.55113 * 294.75095 * 3 2 1 5 5 O 1.21280 * 119.99660 * 114.21083 * 4 3 2 6 6 N 1.34773 * 120.00308 * 294.20879 * 4 3 2 7 7 C 1.46506 * 120.00046 * 184.99283 * 6 4 3 8 8 C 1.52999 * 109.46864 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.47541 * 295.00236 * 8 7 6 10 10 N 1.46496 * 109.47422 * 55.00688 * 8 7 6 11 11 C 1.36939 * 120.00162 * 204.99839 * 10 8 7 12 12 H 1.08001 * 119.99620 * 359.97438 * 11 10 8 13 13 C 1.38810 * 119.99806 * 179.97438 * 11 10 8 14 14 N 1.31622 * 119.99802 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00124 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46925 * 89.99969 * 15 13 11 17 17 H 1.48501 * 109.46930 * 209.99715 * 15 13 11 18 18 H 1.48495 * 109.46958 * 329.99586 * 15 13 11 19 19 C 1.52998 * 109.46879 * 175.00724 * 8 7 6 20 20 C 1.52996 * 109.47640 * 60.00014 * 19 8 7 21 21 C 1.52999 * 109.47196 * 180.02562 * 19 8 7 22 22 C 1.53000 * 117.49993 * 80.42995 * 3 2 1 23 23 C 1.53000 * 117.49572 * 149.08635 * 3 2 1 24 24 H 1.09001 * 109.47271 * 55.71713 * 1 2 3 25 25 H 1.09003 * 109.46802 * 175.71645 * 1 2 3 26 26 H 1.09004 * 109.46805 * 295.71290 * 1 2 3 27 27 H 1.09005 * 109.46828 * 240.00585 * 2 1 3 28 28 H 1.08998 * 109.47236 * 120.00259 * 2 1 3 29 29 H 0.97002 * 120.00033 * 5.00439 * 6 4 3 30 30 H 1.08990 * 109.47364 * 300.00799 * 7 6 4 31 31 H 1.09005 * 109.46303 * 60.00829 * 7 6 4 32 32 H 0.96998 * 119.99773 * 24.99294 * 10 8 7 33 33 H 0.96995 * 119.99899 * 179.97438 * 14 13 11 34 34 H 1.09010 * 109.47245 * 299.99564 * 19 8 7 35 35 H 1.08997 * 109.47108 * 59.99802 * 20 19 8 36 36 H 1.08997 * 109.47304 * 180.02562 * 20 19 8 37 37 H 1.09008 * 109.47030 * 300.00045 * 20 19 8 38 38 H 1.09003 * 109.47613 * 59.99296 * 21 19 8 39 39 H 1.09003 * 109.47613 * 179.97438 * 21 19 8 40 40 H 1.09000 * 109.47016 * 299.99385 * 21 19 8 41 41 H 1.09000 * 117.49876 * 214.99906 * 22 3 2 42 42 H 1.08996 * 117.49579 * 0.02562 * 22 3 2 43 43 H 1.08999 * 117.50114 * 359.97345 * 23 3 2 44 44 H 1.09004 * 117.49842 * 144.97139 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7199 2.2450 -1.2347 5 8 0.9737 3.1983 -1.1617 6 7 2.2628 1.9034 -2.4200 7 6 2.0401 2.7459 -3.5977 8 6 2.7597 2.1377 -4.8032 9 1 3.8360 2.1591 -4.6327 10 7 2.3215 0.7518 -4.9853 11 6 3.1365 -0.1460 -5.6217 12 1 4.1021 0.1679 -5.9897 13 6 2.7215 -1.4594 -5.7938 14 7 3.5046 -2.3222 -6.4059 15 14 1.0509 -2.0020 -5.1579 16 1 0.0293 -1.8020 -6.2170 17 1 1.1052 -3.4391 -4.7876 18 1 0.6904 -1.1964 -3.9637 19 6 2.4260 2.9472 -6.0579 20 6 2.8836 4.3946 -5.8679 21 6 3.1450 2.3386 -7.2636 22 6 2.0627 2.1838 1.3382 23 6 3.3732 1.7204 0.6972 24 1 -0.3634 0.5789 -0.8491 25 1 -0.3633 -1.0248 -0.0768 26 1 -0.3633 0.4459 0.9260 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.8009 1.0997 -2.4934 30 1 0.9718 2.8058 -3.8049 31 1 2.4301 3.7460 -3.4079 32 1 1.4541 0.4700 -4.6551 33 1 3.2148 -3.2400 -6.5258 34 1 1.3496 2.9258 -6.2286 35 1 3.9599 4.4160 -5.6973 36 1 2.6455 4.9713 -6.7616 37 1 2.3710 4.8280 -5.0090 38 1 2.8187 1.3074 -7.3989 39 1 2.9070 2.9150 -8.1576 40 1 4.2214 2.3597 -7.0933 41 1 1.8460 3.2520 1.3256 42 1 1.7148 1.6436 2.2187 43 1 3.8868 0.8757 1.1563 44 1 4.0190 2.4835 0.2627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732565708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:58 Heat of formation + Delta-G solvation = -40.562551 kcal Electronic energy + Delta-G solvation = -21704.090699 eV Core-core repulsion = 18656.035279 eV Total energy + Delta-G solvation = -3048.055420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.23418 -39.12612 -37.77183 -35.29821 -34.94353 -32.86453 -32.69383 -29.90126 -27.61813 -26.15766 -24.93237 -23.87772 -23.30266 -22.64935 -21.19251 -20.41827 -19.34785 -17.76885 -17.18831 -17.04152 -16.47630 -16.02850 -15.70548 -15.33115 -14.98542 -14.79745 -14.68810 -14.58773 -14.20986 -13.95841 -13.50311 -13.38204 -12.99359 -12.93373 -12.85745 -12.64201 -12.53798 -12.40442 -12.26407 -12.14735 -11.96598 -11.78442 -11.50093 -11.36375 -11.34443 -10.99955 -10.89868 -10.69709 -10.04669 -9.27976 -7.95635 -5.27632 1.38262 1.40863 1.46758 1.56798 2.19559 2.51024 2.76686 3.35701 3.54223 3.60847 3.76935 3.85013 3.88888 4.00859 4.23568 4.26309 4.36534 4.40852 4.51661 4.56790 4.61403 4.69685 4.74490 4.89526 4.93618 4.96602 5.00361 5.02261 5.04475 5.13946 5.15212 5.21862 5.22873 5.30106 5.31363 5.50461 5.60657 5.75304 5.86730 6.26808 6.56554 7.12249 7.21992 7.86821 8.05625 9.25327 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.007209 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.879161 B = 3883.202586 C = 5217.119620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.176 4.176 4 C 0.545 3.455 5 O -0.584 6.584 6 N -0.712 5.712 7 C 0.118 3.882 8 C 0.177 3.823 9 H 0.059 0.941 10 N -0.746 5.746 11 C -0.202 4.202 12 H 0.069 0.931 13 C -0.057 4.057 14 N -0.981 5.981 15 Si 0.938 3.062 16 H -0.292 1.292 17 H -0.301 1.301 18 H -0.254 1.254 19 C -0.105 4.105 20 C -0.141 4.141 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.143 4.143 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.410 0.590 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.362 0.638 33 H 0.254 0.746 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.039 0.961 41 H 0.088 0.912 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 9.505 13.276 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.179 4.179 4 C 0.333 3.667 5 O -0.465 6.465 6 N -0.362 5.362 7 C -0.006 4.006 8 C 0.069 3.931 9 H 0.077 0.923 10 N -0.388 5.388 11 C -0.333 4.333 12 H 0.087 0.913 13 C -0.248 4.248 14 N -0.632 5.632 15 Si 0.767 3.233 16 H -0.219 1.219 17 H -0.228 1.228 18 H -0.179 1.179 19 C -0.127 4.127 20 C -0.199 4.199 21 C -0.191 4.191 22 C -0.175 4.175 23 C -0.180 4.180 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.246 0.754 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.195 0.805 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.217 10.113 13.208 16.782 hybrid contribution -0.832 -1.176 -0.439 1.506 sum -3.048 8.937 12.769 15.881 Atomic orbital electron populations 1.21722 0.95704 1.01725 1.01501 1.21060 0.95901 0.91137 1.03631 1.21502 1.06314 0.97674 0.92433 1.20030 0.78684 0.83552 0.84459 1.90629 1.37699 1.31435 1.86719 1.46020 1.53031 1.28684 1.08493 1.21684 1.00074 0.94389 0.84447 1.20653 0.97422 0.83233 0.91827 0.92327 1.42809 1.19228 1.06857 1.69933 1.18932 0.98510 0.89476 1.26419 0.91289 1.25244 1.00792 0.96602 1.02189 1.69844 1.38858 1.04326 1.50215 0.85668 0.81612 0.77059 0.78913 1.21910 1.22816 1.17903 1.21610 0.99799 0.95412 0.95868 1.21848 1.01422 0.94539 1.02046 1.21716 0.99314 1.01005 0.97040 1.23038 1.00163 1.00481 0.93841 1.23211 0.89408 1.04129 1.01284 0.95500 0.91627 0.91375 0.92235 0.88172 0.75375 0.92768 0.89788 0.80537 0.93710 0.92249 0.92433 0.91950 0.92019 0.93404 0.92954 0.94137 0.89348 0.85812 0.85529 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.84 71.98 0.71 -2.82 16 2 C -0.08 -1.78 5.81 30.60 0.18 -1.60 16 3 C -0.18 -4.22 1.90 -52.93 -0.10 -4.32 16 4 C 0.55 17.06 6.39 87.66 0.56 17.62 16 5 O -0.58 -21.94 16.71 -3.03 -0.05 -21.99 16 6 N -0.71 -22.07 5.39 -463.06 -2.49 -24.56 16 7 C 0.12 3.66 4.73 86.38 0.41 4.07 16 8 C 0.18 6.02 2.18 44.99 0.10 6.12 16 9 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 10 N -0.75 -31.24 4.24 -322.95 -1.37 -32.61 16 11 C -0.20 -10.38 8.05 84.03 0.68 -9.70 16 12 H 0.07 3.87 7.62 -2.91 -0.02 3.85 16 13 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 14 N -0.98 -60.11 13.97 21.65 0.30 -59.81 16 15 Si 0.94 44.15 27.74 68.60 1.90 46.06 16 16 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 17 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 18 H -0.25 -10.85 6.52 99.48 0.65 -10.21 16 19 C -0.11 -3.30 2.69 -10.80 -0.03 -3.33 16 20 C -0.14 -3.43 8.84 71.98 0.64 -2.79 16 21 C -0.13 -4.71 8.26 71.98 0.59 -4.11 16 22 C -0.14 -2.70 9.78 30.62 0.30 -2.40 16 23 C -0.14 -2.64 9.93 30.62 0.30 -2.33 16 24 H 0.03 0.77 7.58 -2.39 -0.02 0.75 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.10 1.67 8.09 -2.39 -0.02 1.65 16 29 H 0.41 12.87 8.14 -92.71 -0.75 12.12 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 2.38 6.71 -2.38 -0.02 2.36 16 32 H 0.36 15.35 5.66 -92.71 -0.52 14.82 16 33 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.38 6.54 -2.38 -0.02 1.37 16 38 H 0.05 2.08 6.01 -2.39 -0.01 2.06 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.98 8.00 -2.39 -0.02 1.96 16 42 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.13 1.76 8.14 -2.39 -0.02 1.75 16 44 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -64.99 351.13 2.73 -62.26 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -0.37 Total: 38.94 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 4.80 Total: -8.29 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -3.56 Total: -116.98 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.06 kcal Total: -64.99 2.73 -62.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732565708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.700 kcal (2) G-P(sol) polarization free energy of solvation -64.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds