Wall clock time and date at job start Mon Mar 30 2020 19:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47109 * 2 1 4 4 C 1.52999 * 109.47199 * 239.99490 * 2 1 3 5 5 C 1.50700 * 109.46900 * 119.99372 * 2 1 3 6 6 O 1.21284 * 120.00353 * 353.49751 * 5 2 1 7 7 N 1.34779 * 120.00118 * 173.48799 * 5 2 1 8 8 C 1.46928 * 120.62799 * 5.63784 * 7 5 2 9 9 C 1.53189 * 108.77142 * 126.41081 * 8 7 5 10 10 C 1.53106 * 109.33084 * 54.63970 * 9 8 7 11 11 C 1.53044 * 109.50285 * 298.65565 * 10 9 8 12 12 C 1.46921 * 120.63142 * 185.66564 * 7 5 2 13 13 H 1.08998 * 109.58698 * 113.80454 * 12 7 5 14 14 C 1.53002 * 109.58901 * 353.37239 * 12 7 5 15 15 N 1.46497 * 109.46927 * 70.37079 * 14 12 7 16 16 C 1.36931 * 120.00011 * 182.91998 * 15 14 12 17 17 H 1.07999 * 120.00094 * 359.97438 * 16 15 14 18 18 C 1.38818 * 120.00117 * 180.02562 * 16 15 14 19 19 N 1.31614 * 119.99890 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99691 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47182 * 59.99858 * 20 18 16 22 22 H 1.48503 * 109.46484 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47367 * 299.99568 * 20 18 16 24 24 H 1.08999 * 109.47020 * 300.00266 * 1 2 3 25 25 H 1.09003 * 109.46583 * 60.00151 * 1 2 3 26 26 H 1.08998 * 109.47210 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46849 * 166.24274 * 3 2 1 28 28 H 1.08999 * 109.46865 * 286.23460 * 3 2 1 29 29 H 1.08992 * 109.47503 * 46.23650 * 3 2 1 30 30 H 1.09003 * 109.47381 * 308.42108 * 4 2 1 31 31 H 1.09002 * 109.46817 * 68.42009 * 4 2 1 32 32 H 1.09000 * 109.47030 * 188.41954 * 4 2 1 33 33 H 1.08992 * 109.59162 * 246.19773 * 8 7 5 34 34 H 1.08998 * 109.58582 * 6.63139 * 8 7 5 35 35 H 1.09006 * 109.50015 * 174.58871 * 9 8 7 36 36 H 1.08997 * 109.50207 * 294.65513 * 9 8 7 37 37 H 1.09004 * 109.50609 * 178.62790 * 10 9 8 38 38 H 1.08997 * 109.45095 * 58.64820 * 10 9 8 39 39 H 1.08999 * 109.49462 * 301.38085 * 11 10 9 40 40 H 1.09000 * 109.49551 * 181.31631 * 11 10 9 41 41 H 1.09002 * 109.46923 * 190.37289 * 14 12 7 42 42 H 1.08995 * 109.46934 * 310.37267 * 14 12 7 43 43 H 0.97003 * 119.99976 * 2.92019 * 15 14 12 44 44 H 0.97000 * 119.99561 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 2.0323 -0.7103 1.2306 6 8 1.2506 -1.0670 2.0865 7 7 3.3503 -0.9493 1.3799 8 6 4.3217 -0.4170 0.4147 9 6 5.3926 0.3703 1.1763 10 6 6.0061 -0.5236 2.2573 11 6 4.9192 -0.9455 3.2488 12 6 3.8429 -1.7477 2.5107 13 1 4.2708 -2.6795 2.1411 14 6 2.6866 -2.0537 3.4648 15 7 1.7723 -3.0086 2.8336 16 6 0.6255 -3.3874 3.4788 17 1 0.3951 -2.9825 4.4532 18 6 -0.2407 -4.2926 2.8809 19 7 0.0403 -4.7864 1.6937 20 14 -1.8048 -4.8098 3.7615 21 1 -2.6506 -3.6150 4.0109 22 1 -2.5514 -5.7768 2.9172 23 1 -1.4561 -5.4484 5.0560 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1022 1.4523 0.2444 28 1 1.8903 1.8808 -0.9867 29 1 1.4911 2.0220 0.7421 30 1 1.5591 -1.6964 -1.3276 31 1 1.8048 -0.1281 -2.1328 32 1 3.1196 -0.8535 -1.1771 33 1 4.7887 -1.2403 -0.1257 34 1 3.8139 0.2431 -0.2885 35 1 6.1713 0.6895 0.4834 36 1 4.9389 1.2453 1.6417 37 1 6.7855 0.0260 2.7850 38 1 6.4380 -1.4102 1.7931 39 1 4.4698 -0.0584 3.6951 40 1 5.3605 -1.5628 4.0313 41 1 3.0800 -2.4822 4.3867 42 1 2.1499 -1.1327 3.6923 43 1 1.9794 -3.3725 1.9586 44 1 -0.5652 -5.4186 1.2758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266881474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:08 Heat of formation + Delta-G solvation = 16.726384 kcal Electronic energy + Delta-G solvation = -22991.472055 eV Core-core repulsion = 19945.900869 eV Total energy + Delta-G solvation = -3045.571186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.44932 -37.11995 -35.94783 -33.82953 -32.32174 -31.72005 -29.75116 -27.18282 -26.85628 -26.16051 -24.38585 -22.70298 -22.35827 -20.84567 -20.02571 -18.18196 -16.69251 -15.92609 -15.58143 -14.91986 -14.69138 -14.44906 -14.15082 -14.04217 -13.52995 -13.43066 -13.27065 -12.78147 -12.36520 -12.11520 -12.02778 -11.91402 -11.86622 -11.61789 -11.34722 -11.31608 -10.95191 -10.89225 -10.68248 -10.65934 -10.63193 -10.56899 -10.25827 -9.99645 -9.79918 -9.42650 -8.62797 -8.03796 -7.91250 -6.44069 -5.47149 -2.67254 3.50063 3.55970 3.61225 3.63208 3.65236 4.77028 4.81773 4.88262 4.94028 5.02166 5.08906 5.23468 5.25232 5.44575 5.51503 5.58576 5.66041 5.70615 5.79991 5.83235 5.86341 5.90147 5.94291 6.02021 6.06827 6.07513 6.13933 6.19247 6.24725 6.30098 6.35910 6.42215 6.56955 6.62517 6.78373 6.82204 7.05523 7.40175 7.95084 8.13634 8.71061 9.15130 9.82278 10.42088 10.77120 11.77169 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.007455 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.525860 B = 3754.997634 C = 4675.220365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 C -0.150 4.150 4 C -0.156 4.156 5 C 0.489 3.511 6 O -0.443 6.443 7 N -0.614 5.614 8 C 0.092 3.908 9 C -0.136 4.136 10 C -0.117 4.117 11 C -0.127 4.127 12 C 0.142 3.858 13 H 0.064 0.936 14 C 0.160 3.840 15 N -0.700 5.700 16 C -0.196 4.196 17 H 0.062 0.938 18 C -0.024 4.024 19 N -0.942 5.942 20 Si 0.900 3.100 21 H -0.290 1.290 22 H -0.295 1.295 23 H -0.291 1.291 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.006 0.994 42 H 0.047 0.953 43 H 0.378 0.622 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.934 13.248 -5.625 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.086 4.086 3 C -0.207 4.207 4 C -0.213 4.213 5 C 0.274 3.726 6 O -0.310 6.310 7 N -0.352 5.352 8 C -0.031 4.031 9 C -0.174 4.174 10 C -0.154 4.154 11 C -0.166 4.166 12 C 0.039 3.961 13 H 0.082 0.918 14 C 0.033 3.967 15 N -0.342 5.342 16 C -0.329 4.329 17 H 0.080 0.920 18 C -0.218 4.218 19 N -0.594 5.594 20 Si 0.733 3.267 21 H -0.218 1.218 22 H -0.221 1.221 23 H -0.218 1.218 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.023 0.977 42 H 0.065 0.935 43 H 0.211 0.789 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.299 13.024 -4.993 17.950 hybrid contribution -0.754 -0.459 0.008 0.883 sum 10.544 12.565 -4.984 17.143 Atomic orbital electron populations 1.21618 0.92272 1.03414 1.00815 1.20722 0.97800 0.95426 0.94631 1.22148 1.01566 0.94830 1.02127 1.22252 1.02103 1.01171 0.95759 1.20362 0.81891 0.81535 0.88839 1.91084 1.54645 1.44763 1.40536 1.47811 1.05739 1.54761 1.26919 1.22176 0.90839 0.97960 0.92157 1.21972 0.98259 0.98835 0.98374 1.21497 0.97608 0.99476 0.96856 1.21905 0.96104 1.00628 0.97954 1.21446 0.95160 0.92545 0.86968 0.91772 1.20918 0.88718 0.94770 0.92342 1.42179 1.22303 1.48791 1.20954 1.19060 0.97340 1.17193 0.99271 0.91960 1.24564 0.98837 1.01346 0.97064 1.69639 1.38145 1.35783 1.15820 0.86344 0.84285 0.77757 0.78356 1.21777 1.22087 1.21810 0.92273 0.93220 0.91268 0.91447 0.92138 0.92322 0.91651 0.92493 0.91232 0.92261 0.87896 0.91395 0.91711 0.92204 0.91978 0.91698 0.91114 0.97651 0.93520 0.78906 0.94180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 7.74 37.16 0.29 -1.79 16 2 C -0.08 -1.26 0.75 -155.66 -0.12 -1.38 16 3 C -0.15 -1.77 8.09 37.16 0.30 -1.47 16 4 C -0.16 -2.12 8.09 37.16 0.30 -1.82 16 5 C 0.49 9.31 6.07 -10.98 -0.07 9.25 16 6 O -0.44 -10.73 9.57 5.55 0.05 -10.67 16 7 N -0.61 -9.97 2.96 -165.23 -0.49 -10.46 16 8 C 0.09 1.09 3.78 -3.71 -0.01 1.08 16 9 C -0.14 -1.35 5.90 -26.58 -0.16 -1.51 16 10 C -0.12 -1.24 5.89 -26.65 -0.16 -1.40 16 11 C -0.13 -1.70 5.35 -26.61 -0.14 -1.84 16 12 C 0.14 2.47 2.92 -67.60 -0.20 2.27 16 13 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 14 C 0.16 3.55 4.87 -4.04 -0.02 3.53 16 15 N -0.70 -19.01 3.32 -59.91 -0.20 -19.21 16 16 C -0.20 -5.93 9.32 -15.06 -0.14 -6.07 16 17 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.02 -0.75 5.50 -17.43 -0.10 -0.84 16 19 N -0.94 -30.11 13.06 55.49 0.72 -29.39 16 20 Si 0.90 24.17 29.55 -169.99 -5.02 19.14 16 21 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 22 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 23 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 24 H 0.06 1.04 8.03 -51.93 -0.42 0.63 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 27 H 0.07 0.72 4.81 -51.93 -0.25 0.47 16 28 H 0.06 0.59 7.97 -51.93 -0.41 0.18 16 29 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 30 H 0.06 1.06 8.13 -51.93 -0.42 0.64 16 31 H 0.06 0.64 8.01 -51.93 -0.42 0.22 16 32 H 0.07 0.85 4.39 -51.93 -0.23 0.62 16 33 H 0.06 0.68 7.93 -51.93 -0.41 0.27 16 34 H 0.10 1.10 2.91 -51.93 -0.15 0.95 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.67 7.95 -51.93 -0.41 0.26 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.01 0.13 8.12 -51.93 -0.42 -0.29 16 42 H 0.05 1.13 6.24 -51.93 -0.32 0.80 16 43 H 0.38 10.90 7.49 -40.82 -0.31 10.60 16 44 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 325.38 15.07 4.90 4.90 Total: -1.00 -34.14 325.38 -7.77 -41.91 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.52 Total: 5.78 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.22 Total: -2.01 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.04 Total: -59.05 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.05 Total: -10.67 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.02 Total: 19.14 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.14 -7.77 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266881474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.632 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds