Wall clock time and date at job start Mon Mar 30 2020 19:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 C 1.53003 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46985 * 304.99917 * 4 3 2 6 6 C 1.52999 * 109.47213 * 64.99373 * 4 3 2 7 7 C 1.53003 * 109.47267 * 185.46113 * 6 4 3 8 8 C 1.50698 * 109.47369 * 185.00040 * 4 3 2 9 9 O 1.21285 * 119.99530 * 275.01792 * 8 4 3 10 10 N 1.34770 * 120.00355 * 95.01365 * 8 4 3 11 11 C 1.46501 * 120.00100 * 175.01186 * 10 8 4 12 12 H 1.09004 * 110.77683 * 36.79398 * 11 10 8 13 13 C 1.55402 * 110.85178 * 160.08458 * 11 10 8 14 14 C 1.54915 * 101.66699 * 153.70101 * 13 11 10 15 15 N 1.47429 * 104.82719 * 323.07837 * 14 13 11 16 16 C 1.36942 * 125.64455 * 204.16025 * 15 14 13 17 17 H 1.07996 * 119.99889 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99882 * 359.96019 * 16 15 14 19 19 N 1.31621 * 120.00158 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47146 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47538 * 119.99793 * 20 18 16 23 23 H 1.48506 * 109.46836 * 239.99935 * 20 18 16 24 24 C 1.47022 * 108.70470 * 24.12565 * 15 14 13 25 25 H 1.08994 * 109.47056 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47245 * 300.00538 * 1 2 3 27 27 H 1.08997 * 109.46660 * 60.00286 * 1 2 3 28 28 H 1.09000 * 109.47245 * 239.99462 * 2 1 3 29 29 H 1.09000 * 109.47074 * 119.99422 * 2 1 3 30 30 H 1.08993 * 109.47324 * 59.99976 * 3 2 1 31 31 H 1.09000 * 109.46735 * 299.99630 * 3 2 1 32 32 H 1.08998 * 109.47702 * 305.46794 * 6 4 3 33 33 H 1.09004 * 109.46733 * 65.46592 * 6 4 3 34 34 H 1.08997 * 109.47604 * 294.93710 * 7 6 4 35 35 H 1.09001 * 109.46472 * 54.93164 * 7 6 4 36 36 H 1.08997 * 109.47089 * 174.92865 * 7 6 4 37 37 H 0.97004 * 119.99921 * 355.01322 * 10 8 4 38 38 H 1.09005 * 110.89405 * 35.63552 * 13 11 10 39 39 H 1.09002 * 111.07455 * 271.84842 * 13 11 10 40 40 H 1.08994 * 110.36770 * 204.24021 * 14 13 11 41 41 H 1.09002 * 110.45439 * 81.96028 * 14 13 11 42 42 H 0.97000 * 119.99732 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.87992 * 118.35575 * 24 15 14 44 44 H 1.08992 * 109.88335 * 239.36490 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0806 0.8326 -1.3063 7 6 5.6044 0.7073 -1.2496 8 6 4.0724 2.8579 0.1245 9 8 4.1883 3.5490 -0.8655 10 7 4.3927 3.3558 1.3352 11 6 4.9835 4.6920 1.4448 12 1 4.5474 5.3690 0.7102 13 6 4.8111 5.2567 2.8823 14 6 6.0080 6.2355 2.9799 15 7 7.1011 5.5688 2.2490 16 6 8.4391 5.7905 2.4381 17 1 9.1648 5.2486 1.8498 18 6 8.8628 6.7121 3.3859 19 7 7.9784 7.3731 4.1023 20 14 10.6879 7.0151 3.6433 21 1 11.4680 6.1528 2.7197 22 1 10.9966 8.4414 3.3688 23 1 11.0503 6.6914 5.0467 24 6 6.5168 4.6258 1.2841 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6397 -0.1548 -1.4432 33 1 3.7997 1.4748 -2.1411 34 1 6.0494 1.7012 -1.2033 35 1 5.8895 0.1400 -0.3636 36 1 5.9600 0.1911 -2.1414 37 1 4.2321 2.8295 2.1340 38 1 4.8943 4.4628 3.6245 39 1 3.8640 5.7865 2.9843 40 1 6.2875 6.3902 4.0219 41 1 5.7615 7.1869 2.5086 42 1 8.2745 8.0174 4.7643 43 1 6.7959 4.9125 0.2702 44 1 6.8683 3.6157 1.4936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267731663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:56 Heat of formation + Delta-G solvation = -40.265361 kcal Electronic energy + Delta-G solvation = -21122.362716 eV Core-core repulsion = 18074.320182 eV Total energy + Delta-G solvation = -3048.042533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96332 -37.49724 -36.12428 -33.97164 -33.12889 -31.84603 -29.52845 -29.00243 -27.07697 -24.94955 -24.18161 -22.73178 -21.33470 -20.50245 -19.85012 -19.51338 -17.24828 -16.80089 -15.86580 -15.41737 -15.07670 -14.68982 -14.38016 -14.32379 -13.69058 -13.47038 -13.36878 -13.05330 -12.81776 -12.40653 -12.18040 -11.90397 -11.82815 -11.61979 -11.51175 -11.28730 -11.08723 -10.94488 -10.88366 -10.81690 -10.79735 -10.56453 -10.46102 -10.08808 -9.81816 -9.60459 -9.38318 -8.68701 -8.65304 -6.83474 -5.65859 -3.07213 2.85778 3.39616 3.42113 3.46340 3.48853 4.49020 4.52884 4.61949 4.73367 4.90875 5.00237 5.15998 5.25555 5.35656 5.39248 5.45869 5.47084 5.53390 5.58694 5.61159 5.67794 5.71398 5.81342 5.84594 5.89824 5.97311 6.01265 6.09589 6.21787 6.22514 6.28928 6.42259 6.49405 6.59167 6.76050 7.05252 7.47909 7.62637 7.76709 7.85762 8.34190 8.49931 9.21905 9.82480 10.46787 11.38465 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032744 B = 0.003810 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.924656 B = 7347.520586 C = 7863.835163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.107 4.107 5 H 0.087 0.913 6 C -0.108 4.108 7 C -0.156 4.156 8 C 0.517 3.483 9 O -0.542 6.542 10 N -0.717 5.717 11 C 0.130 3.870 12 H 0.090 0.910 13 C -0.149 4.149 14 C 0.153 3.847 15 N -0.604 5.604 16 C -0.220 4.220 17 H 0.078 0.922 18 C -0.013 4.013 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.130 3.870 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.397 0.603 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.015 0.985 42 H 0.252 0.748 43 H 0.025 0.975 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.268 -14.812 -5.411 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.146 4.146 4 C -0.128 4.128 5 H 0.105 0.895 6 C -0.146 4.146 7 C -0.214 4.214 8 C 0.303 3.697 9 O -0.418 6.418 10 N -0.368 5.368 11 C 0.025 3.975 12 H 0.108 0.892 13 C -0.188 4.188 14 C 0.028 3.972 15 N -0.330 5.330 16 C -0.348 4.348 17 H 0.096 0.904 18 C -0.208 4.208 19 N -0.573 5.573 20 Si 0.746 3.254 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.003 3.997 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.231 0.769 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.128 0.872 41 H 0.033 0.967 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.010 -14.175 -6.013 20.158 hybrid contribution 0.913 -0.013 0.545 1.063 sum -12.097 -14.188 -5.468 19.431 Atomic orbital electron populations 1.21775 0.95817 1.01529 1.01941 1.21587 0.95843 0.96395 1.02330 1.21536 0.92584 0.97513 1.02993 1.21427 0.96963 0.93771 1.00684 0.89476 1.21467 0.96166 1.00579 0.96387 1.21817 0.95714 1.02416 1.01428 1.20579 0.76994 0.88864 0.83283 1.90681 1.53567 1.60619 1.36967 1.46137 1.63467 1.18846 1.08324 1.22108 0.94079 0.82583 0.98737 0.89218 1.23354 1.00777 1.00589 0.94073 1.21934 0.83268 0.90800 1.01200 1.44463 1.02300 1.45280 1.40968 1.19140 0.81014 1.18439 1.16201 0.90437 1.24788 0.98044 0.98907 0.99029 1.69783 1.30970 1.29577 1.26920 0.85979 0.84247 0.77654 0.77525 1.20527 1.21721 1.21747 1.21583 0.90649 0.93922 0.93591 0.92792 0.92716 0.92702 0.91512 0.91859 0.91554 0.91100 0.91229 0.90681 0.92162 0.92892 0.92642 0.76894 0.91731 0.91801 0.87220 0.96677 0.93765 0.95706 0.95773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.91 5.70 -26.73 -0.15 -1.06 16 3 C -0.11 -1.00 4.67 -26.73 -0.12 -1.12 16 4 C -0.11 -1.15 2.18 -91.77 -0.20 -1.35 16 5 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 6 C -0.11 -1.15 5.04 -26.73 -0.13 -1.29 16 7 C -0.16 -1.80 9.65 37.16 0.36 -1.44 16 8 C 0.52 7.72 5.96 -10.99 -0.07 7.66 16 9 O -0.54 -10.28 15.69 5.55 0.09 -10.19 16 10 N -0.72 -10.62 5.13 -51.91 -0.27 -10.88 16 11 C 0.13 2.41 3.29 -65.97 -0.22 2.19 16 12 H 0.09 1.79 7.64 -51.93 -0.40 1.39 16 13 C -0.15 -2.75 6.71 -24.45 -0.16 -2.91 16 14 C 0.15 3.72 5.89 -2.52 -0.01 3.71 16 15 N -0.60 -15.84 3.39 -170.08 -0.58 -16.42 16 16 C -0.22 -6.25 10.27 -15.06 -0.15 -6.40 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 19 N -0.92 -26.96 10.09 55.49 0.56 -26.40 16 20 Si 0.92 22.28 29.55 -169.99 -5.02 17.26 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.13 2.90 6.98 -3.07 -0.02 2.88 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.47 6.45 -51.93 -0.34 0.13 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.58 6.33 -51.93 -0.33 0.26 16 33 H 0.07 0.92 7.66 -51.93 -0.40 0.52 16 34 H 0.06 0.86 7.42 -51.93 -0.39 0.48 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.40 4.77 8.52 -40.82 -0.35 4.42 16 38 H 0.06 1.12 8.01 -51.93 -0.42 0.70 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.11 2.96 5.87 -51.93 -0.31 2.65 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -31.85 346.67 -8.56 -40.41 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.95 Total: 1.26 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.62 Total: -0.25 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.28 Total: -53.70 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.85 -8.56 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267731663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.143 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds