Wall clock time and date at job start Mon Mar 30 2020 19:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 C 1.53003 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46985 * 304.99917 * 4 3 2 6 6 C 1.52999 * 109.47213 * 64.99373 * 4 3 2 7 7 C 1.53003 * 109.47267 * 185.46113 * 6 4 3 8 8 C 1.50698 * 109.47369 * 185.00040 * 4 3 2 9 9 O 1.21285 * 119.99530 * 275.01792 * 8 4 3 10 10 N 1.34770 * 120.00355 * 95.01365 * 8 4 3 11 11 C 1.46501 * 120.00100 * 175.01186 * 10 8 4 12 12 H 1.09004 * 110.77683 * 36.79398 * 11 10 8 13 13 C 1.55402 * 110.85178 * 160.08458 * 11 10 8 14 14 C 1.54915 * 101.66699 * 153.70101 * 13 11 10 15 15 N 1.47429 * 104.82719 * 323.07837 * 14 13 11 16 16 C 1.36942 * 125.64455 * 204.16025 * 15 14 13 17 17 H 1.07996 * 119.99889 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99882 * 359.96019 * 16 15 14 19 19 N 1.31621 * 120.00158 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47146 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47538 * 119.99793 * 20 18 16 23 23 H 1.48506 * 109.46836 * 239.99935 * 20 18 16 24 24 C 1.47022 * 108.70470 * 24.12565 * 15 14 13 25 25 H 1.08994 * 109.47056 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47245 * 300.00538 * 1 2 3 27 27 H 1.08997 * 109.46660 * 60.00286 * 1 2 3 28 28 H 1.09000 * 109.47245 * 239.99462 * 2 1 3 29 29 H 1.09000 * 109.47074 * 119.99422 * 2 1 3 30 30 H 1.08993 * 109.47324 * 59.99976 * 3 2 1 31 31 H 1.09000 * 109.46735 * 299.99630 * 3 2 1 32 32 H 1.08998 * 109.47702 * 305.46794 * 6 4 3 33 33 H 1.09004 * 109.46733 * 65.46592 * 6 4 3 34 34 H 1.08997 * 109.47604 * 294.93710 * 7 6 4 35 35 H 1.09001 * 109.46472 * 54.93164 * 7 6 4 36 36 H 1.08997 * 109.47089 * 174.92865 * 7 6 4 37 37 H 0.97004 * 119.99921 * 355.01322 * 10 8 4 38 38 H 1.09005 * 110.89405 * 35.63552 * 13 11 10 39 39 H 1.09002 * 111.07455 * 271.84842 * 13 11 10 40 40 H 1.08994 * 110.36770 * 204.24021 * 14 13 11 41 41 H 1.09002 * 110.45439 * 81.96028 * 14 13 11 42 42 H 0.97000 * 119.99732 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.87992 * 118.35575 * 24 15 14 44 44 H 1.08992 * 109.88335 * 239.36490 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0806 0.8326 -1.3063 7 6 5.6044 0.7073 -1.2496 8 6 4.0724 2.8579 0.1245 9 8 4.1883 3.5490 -0.8655 10 7 4.3927 3.3558 1.3352 11 6 4.9835 4.6920 1.4448 12 1 4.5474 5.3690 0.7102 13 6 4.8111 5.2567 2.8823 14 6 6.0080 6.2355 2.9799 15 7 7.1011 5.5688 2.2490 16 6 8.4391 5.7905 2.4381 17 1 9.1648 5.2486 1.8498 18 6 8.8628 6.7121 3.3859 19 7 7.9784 7.3731 4.1023 20 14 10.6879 7.0151 3.6433 21 1 11.4680 6.1528 2.7197 22 1 10.9966 8.4414 3.3688 23 1 11.0503 6.6914 5.0467 24 6 6.5168 4.6258 1.2841 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6397 -0.1548 -1.4432 33 1 3.7997 1.4748 -2.1411 34 1 6.0494 1.7012 -1.2033 35 1 5.8895 0.1400 -0.3636 36 1 5.9600 0.1911 -2.1414 37 1 4.2321 2.8295 2.1340 38 1 4.8943 4.4628 3.6245 39 1 3.8640 5.7865 2.9843 40 1 6.2875 6.3902 4.0219 41 1 5.7615 7.1869 2.5086 42 1 8.2745 8.0174 4.7643 43 1 6.7959 4.9125 0.2702 44 1 6.8683 3.6157 1.4936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267731663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:55 Heat of formation + Delta-G solvation = -60.181399 kcal Electronic energy + Delta-G solvation = -21123.226340 eV Core-core repulsion = 18074.320182 eV Total energy + Delta-G solvation = -3048.906157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20332 -39.11076 -37.10984 -35.61659 -33.88927 -33.70553 -31.11744 -30.18052 -28.74544 -26.62039 -25.31176 -23.73252 -22.36737 -22.09537 -21.40675 -20.68256 -19.02717 -18.20014 -17.38882 -16.68726 -16.30525 -15.97086 -15.93300 -15.55356 -15.08153 -14.65733 -14.40699 -14.18276 -14.03524 -13.74195 -13.66591 -13.49037 -13.02456 -12.92344 -12.76542 -12.57618 -12.52476 -12.25887 -12.18939 -12.00390 -11.94954 -11.86369 -11.69502 -11.65453 -11.45136 -11.25098 -10.79448 -10.63475 -10.08456 -8.94594 -7.81302 -5.26681 1.45580 1.46871 1.57319 1.66238 2.18628 2.48612 3.28887 3.57766 3.72283 3.73928 3.85772 3.95746 4.04808 4.21453 4.26429 4.33251 4.37638 4.50305 4.56288 4.60450 4.72726 4.74502 4.85652 4.87471 4.91235 4.98114 4.99326 5.02970 5.09951 5.15829 5.30058 5.33657 5.36056 5.41966 5.44296 5.53651 5.55081 5.60067 5.75136 6.26884 6.62547 7.07199 7.31529 7.72355 8.35735 9.20691 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032744 B = 0.003810 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.924656 B = 7347.520586 C = 7863.835163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.104 4.104 4 C -0.098 4.098 5 H 0.114 0.886 6 C -0.106 4.106 7 C -0.156 4.156 8 C 0.514 3.486 9 O -0.586 6.586 10 N -0.706 5.706 11 C 0.147 3.853 12 H 0.074 0.926 13 C -0.126 4.126 14 C 0.152 3.848 15 N -0.623 5.623 16 C -0.244 4.244 17 H 0.075 0.925 18 C -0.063 4.063 19 N -0.946 5.946 20 Si 0.983 3.017 21 H -0.270 1.270 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.131 3.869 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.415 0.585 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.084 0.916 41 H -0.013 1.013 42 H 0.250 0.750 43 H 0.001 0.999 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.141 -17.171 -4.764 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.142 4.142 4 C -0.119 4.119 5 H 0.132 0.868 6 C -0.144 4.144 7 C -0.213 4.213 8 C 0.302 3.698 9 O -0.466 6.466 10 N -0.358 5.358 11 C 0.041 3.959 12 H 0.092 0.908 13 C -0.165 4.165 14 C 0.027 3.973 15 N -0.350 5.350 16 C -0.373 4.373 17 H 0.093 0.907 18 C -0.255 4.255 19 N -0.595 5.595 20 Si 0.811 3.189 21 H -0.195 1.195 22 H -0.218 1.218 23 H -0.212 1.212 24 C 0.004 3.996 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.253 0.747 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.005 0.995 42 H 0.059 0.941 43 H 0.019 0.981 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -13.910 -16.576 -5.355 22.292 hybrid contribution 1.192 0.734 0.289 1.429 sum -12.719 -15.842 -5.066 20.938 Atomic orbital electron populations 1.21783 0.95531 1.02133 1.01738 1.21566 0.96058 0.94817 1.03224 1.21526 0.91133 0.99033 1.02517 1.21486 0.98002 0.90655 1.01773 0.86802 1.21488 0.95625 1.01733 0.95534 1.21817 0.96259 1.00482 1.02755 1.21436 0.75784 0.90265 0.82314 1.90669 1.55313 1.62144 1.38460 1.45958 1.62866 1.17510 1.09445 1.21642 0.91417 0.84483 0.98388 0.90755 1.23152 0.99312 0.99770 0.94222 1.21776 0.85160 0.91371 0.98968 1.44748 1.02263 1.45994 1.42005 1.19451 0.82365 1.18943 1.16544 0.90692 1.25634 1.02403 0.98708 0.98796 1.70015 1.32670 1.29736 1.27105 0.84951 0.79191 0.77242 0.77553 1.19480 1.21833 1.21171 1.21652 0.93351 0.93107 0.91510 0.91792 0.92711 0.93206 0.90975 0.90546 0.91127 0.92632 0.88060 0.92831 0.95900 0.91446 0.91516 0.74748 0.89717 0.88900 0.89858 0.99451 0.94052 0.98070 0.95299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.12 -1.33 5.70 30.60 0.17 -1.16 16 3 C -0.10 -1.66 4.67 30.60 0.14 -1.51 16 4 C -0.10 -1.86 2.18 -11.54 -0.03 -1.89 16 5 H 0.11 1.61 8.13 -2.39 -0.02 1.59 16 6 C -0.11 -2.05 5.04 30.59 0.15 -1.90 16 7 C -0.16 -3.37 9.65 71.98 0.69 -2.68 16 8 C 0.51 14.84 5.96 87.66 0.52 15.36 16 9 O -0.59 -22.59 15.69 -3.04 -0.05 -22.64 16 10 N -0.71 -19.70 5.13 -436.53 -2.24 -21.94 16 11 C 0.15 5.39 3.29 46.26 0.15 5.54 16 12 H 0.07 3.00 7.64 -2.39 -0.02 2.98 16 13 C -0.13 -4.47 6.71 32.07 0.22 -4.25 16 14 C 0.15 7.55 5.89 86.86 0.51 8.06 16 15 N -0.62 -33.49 3.39 -692.00 -2.35 -35.84 16 16 C -0.24 -14.18 10.27 84.03 0.86 -13.32 16 17 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 18 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 19 N -0.95 -56.28 10.09 21.65 0.22 -56.06 16 20 Si 0.98 46.17 29.55 68.60 2.03 48.20 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 C 0.13 5.94 6.98 86.73 0.61 6.55 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.74 6.45 -2.39 -0.02 0.73 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.35 6.33 -2.39 -0.02 1.33 16 33 H 0.05 1.28 7.66 -2.39 -0.02 1.26 16 34 H 0.02 0.65 7.42 -2.39 -0.02 0.63 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.42 8.66 8.52 -92.71 -0.79 7.87 16 38 H 0.08 2.70 8.01 -2.38 -0.02 2.68 16 39 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.08 4.60 5.87 -2.39 -0.01 4.58 16 41 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H 0.25 14.30 8.31 -92.71 -0.77 13.52 16 43 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 44 H 0.03 1.28 8.03 -2.39 -0.02 1.26 16 Total: -1.00 -71.56 346.67 2.97 -68.60 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.17 Total: 14.98 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 5.19 Total: 4.69 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -4.37 Total: -113.83 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -71.56 2.97 -68.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267731663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.415 kcal (2) G-P(sol) polarization free energy of solvation -71.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds