Wall clock time and date at job start Mon Mar 30 2020 19:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.08992 * 109.47063 * 54.99931 * 3 2 1 5 5 C 1.53001 * 109.46637 * 294.99784 * 3 2 1 6 6 C 1.53002 * 109.46963 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47092 * 60.00194 * 6 5 3 8 8 C 1.53006 * 109.47445 * 300.00075 * 7 6 5 9 9 C 1.53000 * 109.47233 * 175.00303 * 3 2 1 10 10 H 1.09002 * 109.47398 * 59.99826 * 9 3 2 11 11 N 1.46901 * 109.46769 * 299.99531 * 9 3 2 12 12 C 1.46900 * 110.99890 * 155.00113 * 11 9 3 13 13 C 1.50698 * 109.47212 * 179.97438 * 12 11 9 14 14 O 1.21280 * 120.00371 * 0.02562 * 13 12 11 15 15 N 1.34785 * 119.99756 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99571 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.46996 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99807 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00255 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99719 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00369 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47088 * 59.99373 * 21 19 17 23 23 H 1.48496 * 109.47421 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47273 * 300.00036 * 21 19 17 25 25 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46883 * 300.00617 * 1 2 3 27 27 H 1.08999 * 109.46883 * 60.00048 * 1 2 3 28 28 H 1.09007 * 109.47199 * 239.99822 * 2 1 3 29 29 H 1.09008 * 109.47149 * 119.99924 * 2 1 3 30 30 H 1.09000 * 109.47437 * 60.00474 * 5 3 2 31 31 H 1.09002 * 109.47508 * 299.99876 * 5 3 2 32 32 H 1.09002 * 109.47067 * 300.00341 * 6 5 3 33 33 H 1.09000 * 109.47312 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47375 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47497 * 59.99850 * 7 6 5 36 36 H 1.09002 * 109.46589 * 300.00331 * 8 7 6 37 37 H 1.08996 * 109.47165 * 179.97438 * 8 7 6 38 38 H 1.00898 * 111.00476 * 278.95503 * 11 9 3 39 39 H 1.09002 * 109.47391 * 300.00224 * 12 11 9 40 40 H 1.09005 * 109.47266 * 59.99895 * 12 11 9 41 41 H 0.96998 * 119.99906 * 359.97438 * 15 13 12 42 42 H 1.09002 * 109.47018 * 299.99918 * 16 15 13 43 43 H 1.08995 * 109.47113 * 59.99906 * 16 15 13 44 44 H 0.97001 * 119.99704 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 6 1.6353 2.1264 -1.3074 6 6 2.1448 3.5691 -1.3072 7 6 3.6696 3.5715 -1.1812 8 6 4.0745 2.8874 0.1262 9 6 3.5649 1.4443 0.1256 10 1 3.9995 0.9052 -0.7162 11 7 3.9535 0.7875 1.3809 12 6 5.3135 0.2400 1.2895 13 6 5.6765 -0.4238 2.5928 14 8 4.8805 -0.4397 3.5077 15 7 6.8859 -0.9999 2.7418 16 6 7.2385 -1.6456 4.0086 17 6 8.6338 -2.2072 3.9149 18 1 9.2010 -2.0947 3.0027 19 6 9.1859 -2.8655 4.9932 20 7 8.4950 -3.0029 6.1038 21 14 10.9152 -3.5623 4.8768 22 1 11.8740 -2.4630 4.5981 23 1 11.2727 -4.2167 6.1609 24 1 10.9738 -4.5604 3.7788 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 0.5490 2.1252 -1.3970 31 1 2.0699 1.5874 -2.1492 32 1 1.7099 4.1079 -0.4654 33 1 1.8561 4.0566 -2.2384 34 1 4.0326 4.5993 -1.1806 35 1 4.1046 3.0326 -2.0230 36 1 3.6394 3.4263 0.9679 37 1 5.1607 2.8887 0.2157 38 1 3.8707 1.4215 2.1615 39 1 5.3569 -0.4928 0.4837 40 1 6.0172 1.0470 1.0849 41 1 7.5224 -0.9875 2.0100 42 1 7.1947 -0.9129 4.8145 43 1 6.5353 -2.4529 4.2130 44 1 8.8836 -3.4657 6.8626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042579607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:57 Heat of formation + Delta-G solvation = -74.753897 kcal Electronic energy + Delta-G solvation = -20665.790797 eV Core-core repulsion = 17616.252729 eV Total energy + Delta-G solvation = -3049.538068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.63451 -38.52755 -34.83040 -34.04762 -33.96772 -32.29913 -29.91738 -29.06329 -27.44331 -25.23025 -23.91987 -22.44014 -21.61754 -20.73785 -20.21267 -19.50415 -17.21387 -16.04682 -15.65324 -15.22170 -15.15740 -14.87001 -14.66693 -14.22060 -14.07632 -13.82122 -13.43722 -13.21857 -12.97791 -12.78759 -12.39036 -12.25113 -11.89742 -11.66387 -11.56099 -11.47490 -11.28600 -11.15953 -10.99272 -10.88794 -10.85364 -10.51678 -10.32809 -10.30103 -10.10520 -9.39973 -8.99370 -8.71758 -8.23126 -7.83907 -6.15487 -4.22546 3.25628 3.30391 3.31909 3.42621 3.83669 4.31068 4.46162 4.50329 4.59686 4.81394 4.94967 4.99317 5.19522 5.20323 5.24365 5.27263 5.33913 5.36476 5.43406 5.51171 5.56163 5.62797 5.67183 5.67935 5.85341 5.87266 5.90758 5.91828 6.01232 6.08309 6.15476 6.21790 6.40555 6.56506 7.02907 7.34078 7.45651 7.48792 7.54234 7.68979 7.98823 8.66050 8.80351 9.14911 9.44242 10.94701 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033170 B = 0.003182 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.923096 B = 8798.426755 C = 9289.914446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.072 4.072 4 H 0.069 0.931 5 C -0.115 4.115 6 C -0.120 4.120 7 C -0.114 4.114 8 C -0.152 4.152 9 C 0.093 3.907 10 H 0.076 0.924 11 N -0.664 5.664 12 C 0.041 3.959 13 C 0.496 3.504 14 O -0.544 6.544 15 N -0.715 5.715 16 C 0.251 3.749 17 C -0.544 4.544 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.886 5.886 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.350 0.650 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.389 0.611 42 H 0.025 0.975 43 H 0.026 0.974 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.341 11.683 -16.768 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.091 4.091 4 H 0.087 0.913 5 C -0.153 4.153 6 C -0.158 4.158 7 C -0.152 4.152 8 C -0.191 4.191 9 C -0.017 4.017 10 H 0.094 0.906 11 N -0.295 5.295 12 C -0.092 4.092 13 C 0.280 3.720 14 O -0.422 6.422 15 N -0.365 5.365 16 C 0.130 3.870 17 C -0.582 4.582 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.170 0.830 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.221 0.779 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.191 10.957 -16.018 22.919 hybrid contribution 1.897 0.427 -0.287 1.966 sum -10.294 11.384 -16.306 22.393 Atomic orbital electron populations 1.21828 0.96734 1.01202 1.01212 1.21481 0.94691 0.96082 1.02982 1.21094 0.94115 0.96568 0.97313 0.91281 1.21653 1.00677 0.95276 0.97730 1.21553 0.95653 0.97101 1.01484 1.21461 0.96031 1.00221 0.97533 1.22326 1.00857 0.97494 0.98418 1.21652 0.95629 0.91898 0.92560 0.90582 1.60215 1.23548 1.40865 1.04880 1.21861 0.90614 0.99302 0.97435 1.20392 0.82575 0.79963 0.89069 1.90662 1.49582 1.59643 1.42293 1.46452 1.14921 1.56381 1.18709 1.19071 0.95368 0.92580 0.79940 1.21199 0.99490 1.37579 0.99965 0.91986 1.24956 0.98306 0.95750 0.95019 1.69971 1.37393 1.41558 1.03378 0.86474 0.83742 0.79219 0.77458 1.20096 1.21064 1.20056 0.93144 0.92982 0.93212 0.92881 0.89844 0.91689 0.92124 0.92084 0.92291 0.92278 0.92051 0.91689 0.92085 0.83035 0.88765 0.93023 0.77851 0.95658 0.95565 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.67 37.16 0.36 -1.08 16 2 C -0.11 -1.23 5.32 -26.73 -0.14 -1.37 16 3 C -0.07 -0.70 1.90 -90.62 -0.17 -0.88 16 4 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.12 -0.93 4.96 -26.73 -0.13 -1.07 16 6 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 7 C -0.11 -0.90 5.92 -26.73 -0.16 -1.06 16 8 C -0.15 -1.41 5.17 -26.70 -0.14 -1.55 16 9 C 0.09 0.97 1.91 -67.69 -0.13 0.84 16 10 H 0.08 0.79 7.80 -51.93 -0.40 0.39 16 11 N -0.66 -8.92 5.02 -107.96 -0.54 -9.46 16 12 C 0.04 0.57 5.97 -4.98 -0.03 0.54 16 13 C 0.50 9.87 7.87 -10.98 -0.09 9.79 16 14 O -0.54 -13.16 16.20 5.56 0.09 -13.07 16 15 N -0.72 -15.09 5.55 -61.47 -0.34 -15.43 16 16 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16 17 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 18 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 21 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.12 7.45 -51.92 -0.39 0.73 16 30 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 37 H 0.06 0.59 7.46 -51.93 -0.39 0.20 16 38 H 0.35 5.00 8.17 -39.29 -0.32 4.68 16 39 H 0.09 1.19 8.06 -51.93 -0.42 0.78 16 40 H 0.05 0.63 7.44 -51.93 -0.39 0.25 16 41 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -31.16 347.11 -9.01 -40.17 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.93 Total: 5.94 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.23 Total: -3.72 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.15 Total: -50.46 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.16 -9.01 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042579607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.584 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds