Wall clock time and date at job start Mon Mar 30 2020 19:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.08992 * 109.47063 * 54.99931 * 3 2 1 5 5 C 1.53001 * 109.46637 * 294.99784 * 3 2 1 6 6 C 1.53002 * 109.46963 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47092 * 60.00194 * 6 5 3 8 8 C 1.53006 * 109.47445 * 300.00075 * 7 6 5 9 9 C 1.53000 * 109.47233 * 175.00303 * 3 2 1 10 10 H 1.09002 * 109.47398 * 59.99826 * 9 3 2 11 11 N 1.46901 * 109.46769 * 299.99531 * 9 3 2 12 12 C 1.46900 * 110.99890 * 155.00113 * 11 9 3 13 13 C 1.50698 * 109.47212 * 179.97438 * 12 11 9 14 14 O 1.21280 * 120.00371 * 0.02562 * 13 12 11 15 15 N 1.34785 * 119.99756 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99571 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.46996 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99807 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00255 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99719 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00369 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47088 * 59.99373 * 21 19 17 23 23 H 1.48496 * 109.47421 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47273 * 300.00036 * 21 19 17 25 25 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46883 * 300.00617 * 1 2 3 27 27 H 1.08999 * 109.46883 * 60.00048 * 1 2 3 28 28 H 1.09007 * 109.47199 * 239.99822 * 2 1 3 29 29 H 1.09008 * 109.47149 * 119.99924 * 2 1 3 30 30 H 1.09000 * 109.47437 * 60.00474 * 5 3 2 31 31 H 1.09002 * 109.47508 * 299.99876 * 5 3 2 32 32 H 1.09002 * 109.47067 * 300.00341 * 6 5 3 33 33 H 1.09000 * 109.47312 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47375 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47497 * 59.99850 * 7 6 5 36 36 H 1.09002 * 109.46589 * 300.00331 * 8 7 6 37 37 H 1.08996 * 109.47165 * 179.97438 * 8 7 6 38 38 H 1.00898 * 111.00476 * 278.95503 * 11 9 3 39 39 H 1.09002 * 109.47391 * 300.00224 * 12 11 9 40 40 H 1.09005 * 109.47266 * 59.99895 * 12 11 9 41 41 H 0.96998 * 119.99906 * 359.97438 * 15 13 12 42 42 H 1.09002 * 109.47018 * 299.99918 * 16 15 13 43 43 H 1.08995 * 109.47113 * 59.99906 * 16 15 13 44 44 H 0.97001 * 119.99704 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 6 1.6353 2.1264 -1.3074 6 6 2.1448 3.5691 -1.3072 7 6 3.6696 3.5715 -1.1812 8 6 4.0745 2.8874 0.1262 9 6 3.5649 1.4443 0.1256 10 1 3.9995 0.9052 -0.7162 11 7 3.9535 0.7875 1.3809 12 6 5.3135 0.2400 1.2895 13 6 5.6765 -0.4238 2.5928 14 8 4.8805 -0.4397 3.5077 15 7 6.8859 -0.9999 2.7418 16 6 7.2385 -1.6456 4.0086 17 6 8.6338 -2.2072 3.9149 18 1 9.2010 -2.0947 3.0027 19 6 9.1859 -2.8655 4.9932 20 7 8.4950 -3.0029 6.1038 21 14 10.9152 -3.5623 4.8768 22 1 11.8740 -2.4630 4.5981 23 1 11.2727 -4.2167 6.1609 24 1 10.9738 -4.5604 3.7788 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 0.5490 2.1252 -1.3970 31 1 2.0699 1.5874 -2.1492 32 1 1.7099 4.1079 -0.4654 33 1 1.8561 4.0566 -2.2384 34 1 4.0326 4.5993 -1.1806 35 1 4.1046 3.0326 -2.0230 36 1 3.6394 3.4263 0.9679 37 1 5.1607 2.8887 0.2157 38 1 3.8707 1.4215 2.1615 39 1 5.3569 -0.4928 0.4837 40 1 6.0172 1.0470 1.0849 41 1 7.5224 -0.9875 2.0100 42 1 7.1947 -0.9129 4.8145 43 1 6.5353 -2.4529 4.2130 44 1 8.8836 -3.4657 6.8626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042579607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:56 Heat of formation + Delta-G solvation = -95.954692 kcal Electronic energy + Delta-G solvation = -20666.710133 eV Core-core repulsion = 17616.252729 eV Total energy + Delta-G solvation = -3050.457404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74319 -39.90610 -36.24302 -35.63471 -34.72057 -34.33258 -30.93085 -29.95544 -29.16201 -26.60749 -24.65279 -24.32678 -22.49424 -21.52945 -21.43930 -20.74559 -18.94611 -17.63672 -17.17467 -16.75219 -16.31197 -16.18547 -15.65604 -15.36732 -15.28001 -14.82764 -14.55358 -14.28974 -14.12295 -14.01803 -13.76256 -13.62555 -13.34642 -13.00929 -12.92473 -12.66719 -12.39971 -12.26199 -12.23967 -12.03892 -11.89046 -11.58315 -11.51442 -11.29147 -11.08789 -10.91877 -10.79290 -10.63793 -9.81794 -9.22442 -8.29217 -6.46245 1.42805 1.47091 1.55331 1.80315 2.29837 2.51303 3.05420 3.31697 3.70944 3.87242 3.99243 4.08492 4.21464 4.28140 4.35888 4.44655 4.46818 4.52374 4.59963 4.61607 4.64857 4.87045 4.90207 4.96552 5.06787 5.11295 5.17556 5.22894 5.24219 5.25330 5.30284 5.37591 5.44035 5.48802 5.49123 5.60699 5.69565 5.70302 5.84958 6.09911 6.38020 6.65051 6.95237 7.23478 7.53096 8.82872 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033170 B = 0.003182 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.923096 B = 8798.426755 C = 9289.914446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.069 4.069 4 H 0.057 0.943 5 C -0.110 4.110 6 C -0.119 4.119 7 C -0.111 4.111 8 C -0.148 4.148 9 C 0.096 3.904 10 H 0.084 0.916 11 N -0.680 5.680 12 C 0.058 3.942 13 C 0.492 3.508 14 O -0.592 6.592 15 N -0.710 5.710 16 C 0.268 3.732 17 C -0.557 4.557 18 H 0.085 0.915 19 C 0.003 3.997 20 N -0.932 5.932 21 Si 0.986 3.014 22 H -0.261 1.261 23 H -0.286 1.286 24 H -0.262 1.262 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.342 0.658 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.408 0.592 42 H -0.014 1.014 43 H -0.016 1.016 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 12.424 -19.673 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.088 4.088 4 H 0.075 0.925 5 C -0.148 4.148 6 C -0.156 4.156 7 C -0.150 4.150 8 C -0.187 4.187 9 C -0.013 4.013 10 H 0.102 0.898 11 N -0.311 5.311 12 C -0.074 4.074 13 C 0.279 3.721 14 O -0.473 6.473 15 N -0.361 5.361 16 C 0.145 3.855 17 C -0.595 4.595 18 H 0.103 0.897 19 C -0.197 4.197 20 N -0.570 5.570 21 Si 0.809 3.191 22 H -0.186 1.186 23 H -0.211 1.211 24 H -0.186 1.186 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.161 0.839 39 H 0.136 0.864 40 H 0.099 0.901 41 H 0.244 0.756 42 H 0.004 0.996 43 H 0.002 0.998 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.086 11.722 -18.991 24.919 hybrid contribution 1.458 0.217 0.635 1.605 sum -9.627 11.939 -18.356 23.920 Atomic orbital electron populations 1.21804 0.95779 1.01354 1.01770 1.21421 0.95587 0.96466 1.01552 1.21065 0.93647 0.95956 0.98111 0.92475 1.21610 1.01166 0.95488 0.96504 1.21548 0.95367 0.96666 1.02059 1.21453 0.96284 1.00521 0.96697 1.22272 1.00689 0.96602 0.99154 1.21707 0.96020 0.92513 0.91087 0.89819 1.60231 1.23189 1.41599 1.06052 1.21761 0.91709 1.00137 0.93765 1.21487 0.81210 0.78755 0.90638 1.90639 1.50849 1.61187 1.44644 1.46189 1.16174 1.56296 1.17394 1.18497 0.94940 0.90543 0.81544 1.21607 0.99549 1.37408 1.00957 0.89747 1.26094 1.03318 0.95908 0.94376 1.70142 1.39858 1.42586 1.04456 0.85195 0.77540 0.78766 0.77640 1.18579 1.21124 1.18610 0.93246 0.93520 0.91512 0.92401 0.93073 0.91036 0.91508 0.92500 0.90896 0.91576 0.91366 0.92427 0.92106 0.83920 0.86444 0.90111 0.75632 0.99617 0.99763 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.67 71.98 0.70 -2.01 16 2 C -0.11 -2.35 5.32 30.59 0.16 -2.19 16 3 C -0.07 -1.27 1.90 -10.79 -0.02 -1.29 16 4 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 5 C -0.11 -1.51 4.96 30.60 0.15 -1.36 16 6 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 7 C -0.11 -1.46 5.92 30.60 0.18 -1.28 16 8 C -0.15 -2.47 5.17 30.61 0.16 -2.31 16 9 C 0.10 1.85 1.91 44.93 0.09 1.93 16 10 H 0.08 1.51 7.80 -2.39 -0.02 1.49 16 11 N -0.68 -17.92 5.02 -495.48 -2.49 -20.41 16 12 C 0.06 1.55 5.97 85.56 0.51 2.06 16 13 C 0.49 19.81 7.87 87.66 0.69 20.50 16 14 O -0.59 -29.95 16.20 -3.03 -0.05 -30.00 16 15 N -0.71 -30.18 5.55 -466.78 -2.59 -32.77 16 16 C 0.27 14.94 5.43 85.63 0.46 15.41 16 17 C -0.56 -30.59 9.28 25.60 0.24 -30.35 16 18 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 19 C 0.00 0.14 5.46 84.65 0.46 0.61 16 20 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 21 Si 0.99 42.46 29.54 68.60 2.03 44.48 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 23 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.97 6.56 -2.39 -0.02 0.96 16 28 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.05 1.40 7.45 -2.38 -0.02 1.38 16 30 H 0.07 0.91 6.57 -2.39 -0.02 0.89 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 37 H 0.06 1.02 7.46 -2.39 -0.02 1.00 16 38 H 0.34 9.91 8.17 -89.70 -0.73 9.18 16 39 H 0.12 2.65 8.06 -2.39 -0.02 2.63 16 40 H 0.08 1.74 7.44 -2.38 -0.02 1.73 16 41 H 0.41 14.13 8.32 -92.71 -0.77 13.36 16 42 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 43 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 44 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -70.50 347.11 0.61 -69.89 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -0.53 Total: 26.97 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 3.96 Total: -1.57 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -4.79 Total: -109.78 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.05 Total: -30.00 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -70.50 0.61 -69.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042579607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.066 kcal (2) G-P(sol) polarization free energy of solvation -70.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds