Wall clock time and date at job start Mon Mar 30 2020 19:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46945 * 2 1 4 4 H 1.09003 * 109.46874 * 305.44838 * 3 2 1 5 5 C 1.50703 * 109.47273 * 185.44924 * 3 2 1 6 6 H 1.07998 * 119.99977 * 244.29089 * 5 3 2 7 7 C 1.37877 * 120.00100 * 64.28372 * 5 3 2 8 8 N 1.31512 * 120.00256 * 197.07740 * 7 5 3 9 9 Si 1.86806 * 119.99606 * 17.08132 * 7 5 3 10 10 H 1.48505 * 109.46895 * 89.67868 * 9 7 5 11 11 H 1.48497 * 109.46823 * 209.67222 * 9 7 5 12 12 H 1.48492 * 109.47257 * 329.67559 * 9 7 5 13 13 N 1.46502 * 109.47199 * 65.44771 * 3 2 1 14 14 C 1.34775 * 120.00073 * 259.60814 * 13 3 2 15 15 O 1.21282 * 119.99917 * 4.88689 * 14 13 3 16 16 C 1.50702 * 119.99861 * 184.88383 * 14 13 3 17 17 H 1.08999 * 109.47242 * 40.12604 * 16 14 13 18 18 N 1.46903 * 109.46649 * 160.12510 * 16 14 13 19 19 C 1.52996 * 109.47099 * 280.12279 * 16 14 13 20 20 C 1.53002 * 109.47554 * 293.69874 * 19 16 14 21 21 C 1.52993 * 109.47215 * 179.97438 * 20 19 16 22 22 C 1.52998 * 109.47220 * 60.00038 * 21 20 19 23 23 C 1.53001 * 109.47168 * 299.99744 * 22 21 20 24 24 C 1.52998 * 109.47156 * 173.69743 * 19 16 14 25 25 H 1.08991 * 109.47085 * 54.20762 * 1 2 3 26 26 H 1.09002 * 109.47030 * 294.20294 * 1 2 3 27 27 H 1.09001 * 109.46480 * 174.20633 * 1 2 3 28 28 H 1.09003 * 109.47298 * 119.99740 * 2 1 3 29 29 H 1.09000 * 109.47512 * 239.99966 * 2 1 3 30 30 H 0.96999 * 119.99849 * 180.02562 * 8 7 5 31 31 H 0.97005 * 119.99868 * 79.60826 * 13 3 2 32 32 H 1.00894 * 111.00188 * 296.04557 * 18 16 14 33 33 H 1.00903 * 111.00184 * 60.00717 * 18 16 14 34 34 H 1.09008 * 109.46971 * 53.70062 * 19 16 14 35 35 H 1.08996 * 109.47019 * 300.00449 * 20 19 16 36 36 H 1.09005 * 109.46660 * 60.00296 * 20 19 16 37 37 H 1.09002 * 109.47508 * 299.99802 * 21 20 19 38 38 H 1.09001 * 109.47430 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47251 * 179.97438 * 22 21 20 40 40 H 1.09008 * 109.46920 * 59.99911 * 22 21 20 41 41 H 1.08991 * 109.47348 * 300.00020 * 23 22 21 42 42 H 1.09005 * 109.46832 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47316 * 300.00290 * 24 19 16 44 44 H 1.09002 * 109.47073 * 59.99875 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9837 -0.8372 5 6 3.5409 1.4448 -0.1349 6 1 4.1548 1.8244 0.6685 7 6 4.1305 0.9620 -1.2840 8 7 5.4076 0.6479 -1.2858 9 14 3.1153 0.7541 -2.8382 10 1 3.1610 2.0091 -3.6308 11 1 3.6697 -0.3619 -3.6459 12 1 1.7084 0.4500 -2.4735 13 7 1.6616 2.0943 1.2563 14 6 0.5967 2.9195 1.2934 15 8 -0.1008 3.0539 0.3103 16 6 0.2726 3.6752 2.5563 17 1 1.1957 4.0311 3.0138 18 7 -0.5878 4.8214 2.2339 19 6 -0.4560 2.7490 3.5320 20 6 -1.8231 2.3748 2.9558 21 6 -2.5514 1.4481 3.9312 22 6 -2.7410 2.1642 5.2699 23 6 -1.3739 2.5383 5.8463 24 6 -0.6456 3.4656 4.8704 25 1 -0.3633 0.6010 -0.8335 26 1 -0.3633 0.4213 0.9374 27 1 -0.3632 -1.0225 -0.1037 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 5.8224 0.3086 -2.0943 31 1 2.1776 1.9318 2.0616 32 1 -0.1052 5.4805 1.6419 33 1 -1.4508 4.5173 1.8084 34 1 0.1339 1.8451 3.6843 35 1 -2.4129 3.2786 2.8035 36 1 -1.6880 1.8641 2.0023 37 1 -1.9614 0.5442 4.0831 38 1 -3.5251 1.1811 3.5205 39 1 -3.2603 1.5041 5.9648 40 1 -3.3311 3.0681 5.1181 41 1 -0.7839 1.6346 5.9981 42 1 -1.5091 3.0489 6.7998 43 1 0.3283 3.7322 5.2810 44 1 -1.2355 4.3695 4.7182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220898807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:13 Heat of formation + Delta-G solvation = -94.350735 kcal Electronic energy + Delta-G solvation = -22052.534136 eV Core-core repulsion = 19002.146285 eV Total energy + Delta-G solvation = -3050.387851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26234 -39.22441 -37.21719 -35.22099 -34.40919 -33.07637 -31.56649 -30.96159 -29.51456 -26.70666 -24.59227 -23.50607 -22.93010 -21.76082 -21.08540 -20.30381 -19.05975 -17.69998 -17.55837 -17.08153 -16.58093 -16.06637 -15.56838 -15.29559 -15.02012 -14.96709 -14.80744 -14.21749 -14.19813 -14.01440 -13.77262 -13.59013 -13.06926 -12.94872 -12.93704 -12.73536 -12.45078 -12.35574 -11.91840 -11.87046 -11.83498 -11.53432 -11.48057 -11.27594 -11.16271 -10.93952 -10.77970 -10.64924 -9.75470 -9.64147 -8.41027 -6.39646 1.27207 1.33825 1.43429 1.77989 2.27263 2.54096 2.94639 3.56356 3.77066 3.80067 3.92207 4.09590 4.28279 4.28908 4.35361 4.42918 4.48795 4.51443 4.57137 4.67629 4.73461 4.78041 4.81975 4.87627 5.05333 5.07868 5.17561 5.20757 5.26047 5.32385 5.36512 5.39461 5.43885 5.45376 5.50269 5.54931 5.70493 5.73705 6.02371 6.17421 6.42321 6.61172 6.90343 7.21402 7.48122 8.74476 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.005097 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.616478 B = 5492.235474 C = 5637.371543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.129 4.129 3 C 0.249 3.751 4 H 0.025 0.975 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.038 3.962 8 N -0.926 5.926 9 Si 0.914 3.086 10 H -0.281 1.281 11 H -0.278 1.278 12 H -0.239 1.239 13 N -0.699 5.699 14 C 0.474 3.526 15 O -0.591 6.591 16 C 0.085 3.915 17 H 0.111 0.889 18 N -0.808 5.808 19 C -0.066 4.066 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.099 4.099 25 H 0.032 0.968 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.269 0.731 31 H 0.403 0.597 32 H 0.343 0.657 33 H 0.346 0.654 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.075 2.984 13.312 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.168 4.168 3 C 0.143 3.857 4 H 0.043 0.957 5 C -0.579 4.579 6 H 0.069 0.931 7 C -0.163 4.163 8 N -0.564 5.564 9 Si 0.738 3.262 10 H -0.208 1.208 11 H -0.204 1.204 12 H -0.163 1.163 13 N -0.347 5.347 14 C 0.260 3.740 15 O -0.472 6.472 16 C -0.031 4.031 17 H 0.128 0.872 18 N -0.337 5.337 19 C -0.085 4.085 20 C -0.152 4.152 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.156 4.156 24 C -0.136 4.136 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.238 0.762 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.409 3.161 13.299 20.598 hybrid contribution 0.736 -0.555 -1.989 2.192 sum -14.673 2.606 11.310 18.709 Atomic orbital electron populations 1.21654 0.95737 1.00664 1.00839 1.22130 0.95204 0.98230 1.01201 1.18737 0.92843 0.89941 0.84150 0.95723 1.21307 0.90823 1.42447 1.03288 0.93150 1.25463 0.95630 0.93801 1.01405 1.70061 1.13435 1.43443 1.29467 0.86371 0.81446 0.77992 0.80376 1.20769 1.20374 1.16253 1.46078 1.29757 1.45996 1.12863 1.22587 0.79895 0.79600 0.91931 1.90618 1.50905 1.66883 1.38789 1.21686 0.98604 0.91514 0.91298 0.87166 1.59263 1.08191 1.13532 1.52722 1.21083 0.95887 0.96867 0.94671 1.21544 0.96103 0.99830 0.97712 1.21498 1.00004 0.98091 0.95744 1.21514 0.97425 1.00372 0.95951 1.21563 0.96067 0.99525 0.98461 1.21445 1.01025 0.98561 0.92613 0.94871 0.93093 0.92118 0.91974 0.93310 0.92178 0.76241 0.84504 0.83964 0.90991 0.91264 0.94442 0.92480 0.91947 0.91325 0.91874 0.92205 0.90907 0.91586 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 8.91 71.98 0.64 -4.23 16 2 C -0.13 -5.44 4.91 30.59 0.15 -5.29 16 3 C 0.25 11.51 1.75 44.25 0.08 11.59 16 4 H 0.02 1.28 5.86 -2.39 -0.01 1.27 16 5 C -0.54 -29.40 9.22 25.60 0.24 -29.16 16 6 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 7 C 0.04 2.12 5.30 84.65 0.45 2.56 16 8 N -0.93 -55.34 13.96 21.45 0.30 -55.04 16 9 Si 0.91 43.83 25.82 68.60 1.77 45.60 16 10 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.24 -10.95 5.58 99.48 0.55 -10.39 16 13 N -0.70 -26.45 4.68 -446.08 -2.09 -28.53 16 14 C 0.47 16.51 5.24 87.66 0.46 16.97 16 15 O -0.59 -24.49 14.83 -3.04 -0.05 -24.54 16 16 C 0.08 2.16 2.91 44.17 0.13 2.29 16 17 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 18 N -0.81 -19.17 8.34 -171.80 -1.43 -20.60 16 19 C -0.07 -1.43 1.99 -10.79 -0.02 -1.45 16 20 C -0.11 -2.61 4.53 30.59 0.14 -2.47 16 21 C -0.12 -2.19 5.92 30.59 0.18 -2.01 16 22 C -0.12 -1.80 5.92 30.59 0.18 -1.62 16 23 C -0.12 -1.83 5.93 30.61 0.18 -1.65 16 24 C -0.10 -1.76 5.10 30.61 0.16 -1.60 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.79 6.64 -2.39 -0.02 1.78 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.05 2.17 5.05 -2.39 -0.01 2.16 16 30 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.40 13.54 8.76 -92.70 -0.81 12.72 16 32 H 0.34 8.23 9.06 -89.70 -0.81 7.42 16 33 H 0.35 8.65 6.60 -89.69 -0.59 8.06 16 34 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.07 1.55 6.60 -2.39 -0.02 1.54 16 36 H 0.04 1.07 6.58 -2.38 -0.02 1.05 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.07 1.37 7.79 -2.39 -0.02 1.35 16 Total: -1.00 -63.33 332.04 0.10 -63.23 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -1.37 Total: 35.95 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 2.96 Total: -16.07 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -3.22 Total: -104.18 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.05 Total: -24.54 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.77 Total: 45.60 kcal Total: -63.33 0.10 -63.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.117 kcal (2) G-P(sol) polarization free energy of solvation -63.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds