Wall clock time and date at job start Mon Mar 30 2020 19:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09006 * 109.46983 * 306.13394 * 3 2 1 5 5 C 1.50701 * 109.47211 * 186.13353 * 3 2 1 6 6 H 1.07997 * 120.00303 * 245.61928 * 5 3 2 7 7 C 1.37878 * 119.99838 * 65.62065 * 5 3 2 8 8 N 1.31516 * 119.99882 * 196.27352 * 7 5 3 9 9 Si 1.86800 * 120.00085 * 16.27468 * 7 5 3 10 10 H 1.48496 * 109.46922 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47054 * 299.99870 * 9 7 5 12 12 H 1.48506 * 109.46866 * 60.00127 * 9 7 5 13 13 N 1.46904 * 109.46997 * 66.13321 * 3 2 1 14 14 C 1.47481 * 110.99981 * 275.97240 * 13 3 2 15 15 C 1.53513 * 87.92985 * 221.29707 * 14 13 3 16 16 N 1.46905 * 114.34212 * 139.68130 * 15 14 13 17 17 C 1.46894 * 111.00010 * 210.02873 * 16 15 14 18 18 C 1.46898 * 110.99818 * 86.07567 * 16 15 14 19 19 H 1.09005 * 110.45760 * 59.29684 * 18 16 15 20 20 C 1.54503 * 110.51548 * 181.90332 * 18 16 15 21 21 C 1.54478 * 104.06649 * 118.64365 * 20 18 16 22 22 O 1.44428 * 104.79997 * 23.98325 * 21 20 18 23 23 C 1.44644 * 105.36669 * 319.56264 * 22 21 20 24 24 C 1.47487 * 110.99734 * 179.97438 * 13 3 2 25 25 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 27 27 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 28 28 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 29 29 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 30 30 H 0.96998 * 119.99785 * 354.77782 * 8 7 5 31 31 H 1.09003 * 113.47392 * 336.06101 * 14 13 3 32 32 H 1.08991 * 113.47588 * 106.53059 * 14 13 3 33 33 H 1.08998 * 114.17408 * 272.37462 * 15 14 13 34 34 H 1.09001 * 109.47431 * 60.00741 * 17 16 15 35 35 H 1.09008 * 109.47059 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.47665 * 300.00106 * 17 16 15 37 37 H 1.09001 * 110.51718 * 237.29148 * 20 18 16 38 38 H 1.09004 * 110.51000 * 0.02562 * 20 18 16 39 39 H 1.08997 * 110.37119 * 142.81016 * 21 20 18 40 40 H 1.09000 * 110.37352 * 265.15397 * 21 20 18 41 41 H 1.08993 * 110.34425 * 281.59383 * 23 22 21 42 42 H 1.09002 * 110.50270 * 159.18433 * 23 22 21 43 43 H 1.08994 * 113.47779 * 253.46887 * 24 13 3 44 44 H 1.08998 * 113.47676 * 23.93966 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5897 1.9871 -0.8300 5 6 3.5393 1.4453 -0.1518 6 1 4.1631 1.8017 0.6545 7 6 4.1147 0.9927 -1.3202 8 7 5.3945 0.6911 -1.3491 9 14 3.0765 0.8079 -2.8621 10 1 3.9255 0.3088 -3.9735 11 1 1.9775 -0.1574 -2.6061 12 1 2.5015 2.1260 -3.2325 13 7 1.6748 2.0910 1.2666 14 6 0.2995 2.6208 1.2119 15 6 0.8106 3.8688 1.9453 16 7 0.2471 5.1333 1.4536 17 6 1.1997 6.2376 1.6290 18 6 -1.0315 5.4313 2.1127 19 1 -0.8959 5.5042 3.1918 20 6 -1.6372 6.7380 1.5536 21 6 -2.9825 6.2946 0.9372 22 8 -3.3248 5.0774 1.6351 23 6 -2.0814 4.3509 1.7710 24 6 2.1518 3.4861 1.3028 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.9498 0.8582 -0.5715 31 1 -0.0475 2.8241 0.1988 32 1 -0.4141 2.0372 1.7934 33 1 0.7965 3.7851 3.0319 34 1 2.1121 6.0222 1.0730 35 1 0.7570 7.1618 1.2573 36 1 1.4366 6.3486 2.6871 37 1 -1.8034 7.4562 2.3566 38 1 -0.9882 7.1628 0.7878 39 1 -3.7453 7.0550 1.1041 40 1 -2.8657 6.1006 -0.1291 41 1 -1.8265 3.8573 0.8332 42 1 -2.1517 3.6214 2.5779 43 1 3.0073 3.6356 1.9614 44 1 2.2992 3.9204 0.3140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174508.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:00 Heat of formation + Delta-G solvation = 4.232943 kcal Electronic energy + Delta-G solvation = -22081.431052 eV Core-core repulsion = 19035.318110 eV Total energy + Delta-G solvation = -3046.112942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.33206 -39.03525 -36.04833 -33.78837 -31.95317 -30.83971 -29.31688 -28.39874 -26.00595 -25.14940 -24.03480 -22.78749 -22.18072 -20.46838 -19.40260 -19.20596 -17.57806 -16.62227 -16.53724 -15.60708 -15.55269 -14.99635 -14.52684 -14.12988 -13.69889 -13.57024 -13.05298 -13.00106 -12.69339 -12.54495 -12.48915 -12.10571 -11.98482 -11.65282 -11.50085 -11.38088 -11.15210 -11.09798 -10.92821 -10.64948 -10.37515 -10.06244 -9.90084 -9.83813 -9.78837 -9.40217 -8.76527 -8.36412 -8.30580 -7.94336 -6.46581 -4.06889 3.37241 3.40774 3.58228 3.65049 4.05898 4.37463 4.46876 4.68734 4.71372 4.87790 4.91359 5.16490 5.18417 5.24443 5.32897 5.42035 5.53786 5.56071 5.57583 5.71897 5.75312 5.77714 5.82820 5.94212 5.97434 6.03217 6.05978 6.10729 6.21910 6.36995 6.39662 6.52267 6.58438 6.68882 6.76112 6.98971 7.04511 7.15476 7.19927 7.48973 7.93047 8.18995 8.40308 8.95160 9.61308 10.94051 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024207 B = 0.005392 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.399100 B = 5192.019695 C = 5539.117989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.120 4.120 3 C 0.164 3.836 4 H 0.001 0.999 5 C -0.592 4.592 6 H 0.060 0.940 7 C 0.032 3.968 8 N -0.907 5.907 9 Si 1.041 2.959 10 H -0.285 1.285 11 H -0.271 1.271 12 H -0.285 1.285 13 N -0.458 5.458 14 C 0.010 3.990 15 C 0.032 3.968 16 N -0.521 5.521 17 C 0.023 3.977 18 C 0.052 3.948 19 H 0.052 0.948 20 C -0.151 4.151 21 C 0.049 3.951 22 O -0.380 6.380 23 C 0.052 3.948 24 C 0.038 3.962 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.267 0.733 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.038 10.938 5.349 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.158 4.158 3 C 0.056 3.944 4 H 0.018 0.982 5 C -0.630 4.630 6 H 0.078 0.922 7 C -0.173 4.173 8 N -0.541 5.541 9 Si 0.870 3.130 10 H -0.211 1.211 11 H -0.198 1.198 12 H -0.211 1.211 13 N -0.181 5.181 14 C -0.119 4.119 15 C -0.077 4.077 16 N -0.247 5.247 17 C -0.125 4.125 18 C -0.058 4.058 19 H 0.070 0.930 20 C -0.189 4.189 21 C -0.028 4.028 22 O -0.298 6.298 23 C -0.025 4.025 24 C -0.092 4.092 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.060 9.779 3.835 17.550 hybrid contribution 0.262 1.190 1.722 2.110 sum -13.798 10.969 5.557 18.482 Atomic orbital electron populations 1.22070 0.98597 1.00089 1.00906 1.21924 0.92631 0.99338 1.01895 1.20121 0.97253 0.91121 0.85920 0.98165 1.21933 0.89850 1.48299 1.02952 0.92157 1.25672 0.97750 0.92840 1.01071 1.70851 1.06864 1.41684 1.34683 0.84100 0.75581 0.77175 0.76166 1.21120 1.19781 1.21113 1.68836 1.02396 1.11806 1.35103 1.24012 0.95178 0.93061 0.99661 1.23577 0.98110 0.88589 0.97379 1.62317 1.02931 1.02957 1.56452 1.22385 0.96655 0.93849 0.99620 1.23000 0.90959 0.95151 0.96648 0.92990 1.23065 0.97311 0.97200 1.01360 1.23353 0.95920 0.87122 0.96442 1.89133 1.29670 1.33013 1.77996 1.23597 0.82369 0.94113 1.02404 1.23481 0.94558 0.90923 1.00223 0.94248 0.92530 0.94075 0.91920 0.92304 0.92238 0.91218 0.90933 0.90978 0.90598 0.91408 0.95749 0.90881 0.89288 0.89434 0.92013 0.90519 0.89239 0.91231 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.18 37.15 0.34 -2.55 16 2 C -0.12 -2.66 5.27 -26.73 -0.14 -2.80 16 3 C 0.16 3.87 0.94 -68.86 -0.06 3.80 16 4 H 0.00 0.02 6.19 -51.93 -0.32 -0.30 16 5 C -0.59 -16.40 8.28 -34.44 -0.29 -16.68 16 6 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.03 0.91 5.31 -17.82 -0.09 0.82 16 8 N -0.91 -27.69 13.70 55.43 0.76 -26.93 16 9 Si 1.04 25.14 26.26 -169.99 -4.46 20.68 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.09 5.68 56.52 0.32 -5.76 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.46 -9.47 6.11 -237.78 -1.45 -10.92 16 14 C 0.01 0.17 3.34 -7.47 -0.02 0.15 16 15 C 0.03 0.48 3.32 -67.47 -0.22 0.26 16 16 N -0.52 -6.86 4.58 -224.68 -1.03 -7.89 16 17 C 0.02 0.27 9.05 60.06 0.54 0.81 16 18 C 0.05 0.60 2.82 -66.15 -0.19 0.41 16 19 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 20 C -0.15 -1.46 6.18 -25.17 -0.16 -1.62 16 21 C 0.05 0.49 7.64 37.93 0.29 0.78 16 22 O -0.38 -4.87 11.65 -35.23 -0.41 -5.28 16 23 C 0.05 0.64 5.96 37.93 0.23 0.86 16 24 C 0.04 0.71 5.28 -7.45 -0.04 0.67 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.96 5.11 -51.93 -0.27 0.69 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.47 4.75 -51.93 -0.25 1.22 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.27 8.17 8.73 -40.82 -0.36 7.81 16 31 H 0.07 1.22 7.10 -51.93 -0.37 0.85 16 32 H 0.07 1.12 6.82 -51.93 -0.35 0.76 16 33 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 34 H 0.08 0.96 7.08 -51.93 -0.37 0.59 16 35 H 0.07 0.67 6.13 -51.92 -0.32 0.35 16 36 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.84 6.34 -51.93 -0.33 0.51 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.02 6.53 -51.93 -0.34 0.68 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.08 1.54 7.64 -51.93 -0.40 1.14 16 LS Contribution 324.57 15.07 4.89 4.89 Total: -1.00 -29.91 324.57 -9.12 -39.03 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.60 Total: 1.51 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 0.18 Total: -15.09 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -1.72 Total: -45.74 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.41 Total: -5.28 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -4.46 Total: 20.68 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.91 -9.12 -39.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174508.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.265 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds