Wall clock time and date at job start Mon Mar 30 2020 19:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09006 * 109.46983 * 306.13394 * 3 2 1 5 5 C 1.50701 * 109.47211 * 186.13353 * 3 2 1 6 6 H 1.07997 * 120.00303 * 245.61928 * 5 3 2 7 7 C 1.37878 * 119.99838 * 65.62065 * 5 3 2 8 8 N 1.31516 * 119.99882 * 196.27352 * 7 5 3 9 9 Si 1.86800 * 120.00085 * 16.27468 * 7 5 3 10 10 H 1.48496 * 109.46922 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47054 * 299.99870 * 9 7 5 12 12 H 1.48506 * 109.46866 * 60.00127 * 9 7 5 13 13 N 1.46904 * 109.46997 * 66.13321 * 3 2 1 14 14 C 1.47481 * 110.99981 * 275.97240 * 13 3 2 15 15 C 1.53513 * 87.92985 * 221.29707 * 14 13 3 16 16 N 1.46905 * 114.34212 * 139.68130 * 15 14 13 17 17 C 1.46894 * 111.00010 * 210.02873 * 16 15 14 18 18 C 1.46898 * 110.99818 * 86.07567 * 16 15 14 19 19 H 1.09005 * 110.45760 * 59.29684 * 18 16 15 20 20 C 1.54503 * 110.51548 * 181.90332 * 18 16 15 21 21 C 1.54478 * 104.06649 * 118.64365 * 20 18 16 22 22 O 1.44428 * 104.79997 * 23.98325 * 21 20 18 23 23 C 1.44644 * 105.36669 * 319.56264 * 22 21 20 24 24 C 1.47487 * 110.99734 * 179.97438 * 13 3 2 25 25 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 27 27 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 28 28 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 29 29 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 30 30 H 0.96998 * 119.99785 * 354.77782 * 8 7 5 31 31 H 1.09003 * 113.47392 * 336.06101 * 14 13 3 32 32 H 1.08991 * 113.47588 * 106.53059 * 14 13 3 33 33 H 1.08998 * 114.17408 * 272.37462 * 15 14 13 34 34 H 1.09001 * 109.47431 * 60.00741 * 17 16 15 35 35 H 1.09008 * 109.47059 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.47665 * 300.00106 * 17 16 15 37 37 H 1.09001 * 110.51718 * 237.29148 * 20 18 16 38 38 H 1.09004 * 110.51000 * 0.02562 * 20 18 16 39 39 H 1.08997 * 110.37119 * 142.81016 * 21 20 18 40 40 H 1.09000 * 110.37352 * 265.15397 * 21 20 18 41 41 H 1.08993 * 110.34425 * 281.59383 * 23 22 21 42 42 H 1.09002 * 110.50270 * 159.18433 * 23 22 21 43 43 H 1.08994 * 113.47779 * 253.46887 * 24 13 3 44 44 H 1.08998 * 113.47676 * 23.93966 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5897 1.9871 -0.8300 5 6 3.5393 1.4453 -0.1518 6 1 4.1631 1.8017 0.6545 7 6 4.1147 0.9927 -1.3202 8 7 5.3945 0.6911 -1.3491 9 14 3.0765 0.8079 -2.8621 10 1 3.9255 0.3088 -3.9735 11 1 1.9775 -0.1574 -2.6061 12 1 2.5015 2.1260 -3.2325 13 7 1.6748 2.0910 1.2666 14 6 0.2995 2.6208 1.2119 15 6 0.8106 3.8688 1.9453 16 7 0.2471 5.1333 1.4536 17 6 1.1997 6.2376 1.6290 18 6 -1.0315 5.4313 2.1127 19 1 -0.8959 5.5042 3.1918 20 6 -1.6372 6.7380 1.5536 21 6 -2.9825 6.2946 0.9372 22 8 -3.3248 5.0774 1.6351 23 6 -2.0814 4.3509 1.7710 24 6 2.1518 3.4861 1.3028 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.9498 0.8582 -0.5715 31 1 -0.0475 2.8241 0.1988 32 1 -0.4141 2.0372 1.7934 33 1 0.7965 3.7851 3.0319 34 1 2.1121 6.0222 1.0730 35 1 0.7570 7.1618 1.2573 36 1 1.4366 6.3486 2.6871 37 1 -1.8034 7.4562 2.3566 38 1 -0.9882 7.1628 0.7878 39 1 -3.7453 7.0550 1.1041 40 1 -2.8657 6.1006 -0.1291 41 1 -1.8265 3.8573 0.8332 42 1 -2.1517 3.6214 2.5779 43 1 3.0073 3.6356 1.9614 44 1 2.2992 3.9204 0.3140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174508.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:00 Heat of formation + Delta-G solvation = -19.569902 kcal Electronic energy + Delta-G solvation = -22082.463221 eV Core-core repulsion = 19035.318110 eV Total energy + Delta-G solvation = -3047.145111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61379 -40.13369 -37.28104 -35.49079 -33.92437 -31.76566 -30.38970 -29.85878 -27.45672 -26.56171 -25.36911 -24.06742 -23.52837 -21.63035 -20.95565 -20.55377 -19.65388 -17.70450 -17.52869 -17.09130 -16.67356 -16.08002 -15.77835 -15.51327 -15.17542 -15.00829 -14.50273 -14.44042 -14.11516 -13.75123 -13.69640 -13.54052 -13.48780 -13.10254 -12.84917 -12.55312 -12.38650 -12.28940 -12.08260 -12.03524 -11.84194 -11.72646 -11.47326 -11.32430 -11.19781 -10.74967 -10.71019 -10.43588 -9.64334 -9.38669 -8.75761 -6.36304 1.42342 1.48453 1.67484 2.45356 2.63243 3.04824 3.16867 3.33517 3.43218 3.59885 3.86488 4.05631 4.08832 4.21731 4.31921 4.37703 4.39874 4.43040 4.49392 4.55111 4.61295 4.67563 4.69551 4.77997 4.79948 4.85384 4.86202 4.89009 4.90471 4.98794 5.04190 5.08433 5.15769 5.21662 5.33064 5.41370 5.71250 5.74046 5.96880 6.01830 6.06689 6.16134 6.34348 6.68831 7.41028 8.63599 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024207 B = 0.005392 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.399100 B = 5192.019695 C = 5539.117989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.170 3.830 4 H 0.000 1.000 5 C -0.590 4.590 6 H 0.018 0.982 7 C -0.018 4.018 8 N -0.940 5.940 9 Si 1.077 2.923 10 H -0.289 1.289 11 H -0.240 1.240 12 H -0.268 1.268 13 N -0.480 5.480 14 C 0.019 3.981 15 C 0.060 3.940 16 N -0.528 5.528 17 C 0.023 3.977 18 C 0.051 3.949 19 H 0.058 0.942 20 C -0.145 4.145 21 C 0.044 3.956 22 O -0.397 6.397 23 C 0.051 3.949 24 C 0.034 3.966 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.251 0.749 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.031 0.969 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.055 0.945 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.264 11.941 5.415 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.061 3.939 4 H 0.017 0.983 5 C -0.628 4.628 6 H 0.036 0.964 7 C -0.216 4.216 8 N -0.576 5.576 9 Si 0.899 3.101 10 H -0.215 1.215 11 H -0.164 1.164 12 H -0.193 1.193 13 N -0.203 5.203 14 C -0.110 4.110 15 C -0.049 4.049 16 N -0.254 5.254 17 C -0.125 4.125 18 C -0.058 4.058 19 H 0.076 0.924 20 C -0.182 4.182 21 C -0.033 4.033 22 O -0.316 6.316 23 C -0.026 4.026 24 C -0.096 4.096 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.306 10.798 3.931 20.774 hybrid contribution 1.304 0.960 1.802 2.422 sum -16.002 11.758 5.732 20.668 Atomic orbital electron populations 1.21976 0.94878 1.01923 1.01985 1.21819 0.95940 0.97566 1.00459 1.19948 0.94100 0.92558 0.87333 0.98296 1.22122 0.92340 1.46853 1.01451 0.96354 1.27061 0.97921 0.92319 1.04326 1.70983 1.08049 1.44532 1.34063 0.83671 0.75163 0.78778 0.72491 1.21505 1.16447 1.19283 1.68767 1.05303 1.12847 1.33363 1.23981 0.93243 0.93714 1.00073 1.23260 0.94819 0.89472 0.97355 1.62272 1.03828 1.02450 1.56848 1.22413 0.95914 0.94151 0.99980 1.23055 0.89722 0.96100 0.96908 0.92423 1.23056 0.96842 0.96439 1.01910 1.23536 0.96824 0.86722 0.96199 1.89119 1.30037 1.34057 1.78370 1.23583 0.82546 0.94426 1.02021 1.23406 0.96377 0.90422 0.99388 0.92099 0.91332 0.93121 0.93308 0.93889 0.94027 0.91498 0.88924 0.90053 0.92284 0.89146 0.95016 0.89117 0.88970 0.87362 0.92181 0.91638 0.88720 0.92663 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 9.18 71.98 0.66 -4.31 16 2 C -0.12 -5.16 5.27 30.59 0.16 -5.00 16 3 C 0.17 7.95 0.94 44.17 0.04 7.99 16 4 H 0.00 -0.02 6.19 -2.38 -0.01 -0.04 16 5 C -0.59 -33.78 8.28 25.60 0.21 -33.56 16 6 H 0.02 1.17 7.81 -2.91 -0.02 1.14 16 7 C -0.02 -1.06 5.31 84.65 0.45 -0.61 16 8 N -0.94 -59.67 13.70 21.45 0.29 -59.38 16 9 Si 1.08 50.37 26.26 68.60 1.80 52.17 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.24 -9.99 5.68 99.48 0.57 -9.42 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 N -0.48 -19.67 6.11 -906.20 -5.54 -25.20 16 14 C 0.02 0.59 3.34 83.62 0.28 0.87 16 15 C 0.06 1.72 3.32 45.38 0.15 1.87 16 16 N -0.53 -12.78 4.58 -864.75 -3.96 -16.74 16 17 C 0.02 0.49 9.05 127.69 1.16 1.65 16 18 C 0.05 1.03 2.82 45.93 0.13 1.15 16 19 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 20 C -0.14 -2.30 6.18 31.61 0.20 -2.10 16 21 C 0.04 0.74 7.64 72.48 0.55 1.30 16 22 O -0.40 -9.12 11.65 -148.98 -1.74 -10.85 16 23 C 0.05 1.12 5.96 72.49 0.43 1.55 16 24 C 0.03 1.28 5.28 83.64 0.44 1.72 16 25 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.07 2.09 5.11 -2.39 -0.01 2.07 16 27 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.05 2.21 4.75 -2.39 -0.01 2.20 16 29 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 31 H 0.07 2.19 7.10 -2.39 -0.02 2.17 16 32 H 0.09 2.56 6.82 -2.39 -0.02 2.54 16 33 H 0.08 2.23 8.13 -2.39 -0.02 2.21 16 34 H 0.06 1.47 7.08 -2.39 -0.02 1.45 16 35 H 0.09 1.53 6.13 -2.38 -0.01 1.52 16 36 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.42 6.34 -2.39 -0.02 1.41 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.57 6.53 -2.39 -0.02 1.56 16 42 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 2.33 7.64 -2.39 -0.02 2.31 16 Total: -1.00 -66.81 324.57 -3.49 -70.31 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.78 Total: 17.17 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 4.86 Total: -27.49 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -9.20 Total: -101.32 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -1.74 Total: -10.85 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 1.80 Total: 52.17 kcal Total: -66.81 -3.49 -70.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174508.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.737 kcal (2) G-P(sol) polarization free energy of solvation -66.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds