Wall clock time and date at job start Mon Mar 30 2020 19:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46985 * 2 1 4 4 H 1.09002 * 109.46792 * 183.72605 * 3 2 1 5 5 C 1.50697 * 109.46777 * 63.72987 * 3 2 1 6 6 H 1.08000 * 119.99862 * 239.99664 * 5 3 2 7 7 C 1.37877 * 120.00353 * 60.00003 * 5 3 2 8 8 N 1.31518 * 119.99823 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00151 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47228 * 59.99781 * 9 7 5 11 11 H 1.48504 * 109.47255 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47194 * 299.99889 * 9 7 5 13 13 N 1.46891 * 109.47275 * 303.72887 * 3 2 1 14 14 C 1.46899 * 111.00210 * 184.48709 * 13 3 2 15 15 C 1.53235 * 109.34445 * 187.25385 * 14 13 3 16 16 N 1.47079 * 108.52232 * 306.17217 * 15 14 13 17 17 C 1.34779 * 120.88060 * 230.91571 * 16 15 14 18 18 O 1.21286 * 120.00106 * 176.81255 * 17 16 15 19 19 C 1.50696 * 119.99863 * 356.80116 * 17 16 15 20 20 C 1.53008 * 109.46810 * 172.25671 * 19 17 16 21 21 C 1.52991 * 109.47547 * 292.25975 * 19 17 16 22 22 C 1.47081 * 118.23960 * 51.17600 * 16 15 14 23 23 C 1.46899 * 111.00101 * 308.78662 * 13 3 2 24 24 H 1.09004 * 109.46985 * 174.77064 * 1 2 3 25 25 H 1.09000 * 109.47032 * 294.77145 * 1 2 3 26 26 H 1.08995 * 109.47275 * 54.77349 * 1 2 3 27 27 H 1.09003 * 109.46714 * 240.00484 * 2 1 3 28 28 H 1.08995 * 109.47637 * 120.00421 * 2 1 3 29 29 H 0.96995 * 119.99856 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.49621 * 67.29315 * 14 13 3 31 31 H 1.09004 * 109.49026 * 307.21503 * 14 13 3 32 32 H 1.09002 * 109.63376 * 186.45769 * 15 14 13 33 33 H 1.09004 * 109.63109 * 65.87299 * 15 14 13 34 34 H 1.08997 * 109.47174 * 52.26507 * 19 17 16 35 35 H 1.08995 * 109.47017 * 60.00714 * 20 19 17 36 36 H 1.09005 * 109.46955 * 180.02562 * 20 19 17 37 37 H 1.08997 * 109.47154 * 300.00075 * 20 19 17 38 38 H 1.09005 * 109.47279 * 185.38248 * 21 19 17 39 39 H 1.09001 * 109.47210 * 305.38166 * 21 19 17 40 40 H 1.09004 * 109.47247 * 65.37973 * 21 19 17 41 41 H 1.09007 * 109.62206 * 68.53248 * 22 16 15 42 42 H 1.09004 * 109.63009 * 189.10933 * 22 16 15 43 43 H 1.08994 * 109.49748 * 292.70614 * 23 13 3 44 44 H 1.09001 * 109.49358 * 52.78973 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1280 1.4432 -0.0668 5 6 1.6145 2.1257 1.2741 6 1 0.9893 3.0053 1.2323 7 6 2.0234 1.6278 2.4931 8 7 2.7844 0.5564 2.5439 9 14 1.4965 2.4750 4.0723 10 1 0.0143 2.4746 4.1635 11 1 2.0639 1.7488 5.2368 12 1 1.9920 3.8750 4.0721 13 7 1.4782 2.1605 -1.1518 14 6 2.0292 3.5191 -1.2451 15 6 1.2898 4.2925 -2.3420 16 7 1.3492 3.5104 -3.5862 17 6 1.7609 4.0746 -4.7389 18 8 1.8590 3.4010 -5.7427 19 6 2.0990 5.5426 -4.7806 20 6 2.7168 5.8853 -6.1378 21 6 0.8253 6.3654 -4.5777 22 6 0.9420 2.0978 -3.5405 23 6 1.6952 1.4109 -2.3963 24 1 -0.3633 -1.0234 -0.0937 25 1 -0.3633 0.4306 0.9331 26 1 -0.3633 0.5927 -0.8394 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.0718 0.2059 3.4015 30 1 3.0900 3.4654 -1.4900 31 1 1.9013 4.0298 -0.2907 32 1 1.7685 5.2598 -2.4943 33 1 0.2496 4.4374 -2.0502 34 1 2.8111 5.7740 -3.9885 35 1 2.0047 5.6539 -6.9299 36 1 2.9618 6.9470 -6.1678 37 1 3.6243 5.2991 -6.2823 38 1 1.0527 7.4241 -4.7027 39 1 0.0779 6.0651 -5.3121 40 1 0.4375 6.1932 -3.5736 41 1 -0.1316 2.0319 -3.3638 42 1 1.1908 1.6142 -4.4851 43 1 2.7605 1.3865 -2.6253 44 1 1.3250 0.3927 -2.2769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:25 Heat of formation + Delta-G solvation = -34.941789 kcal Electronic energy + Delta-G solvation = -22020.014851 eV Core-core repulsion = 18972.203165 eV Total energy + Delta-G solvation = -3047.811686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16463 -37.93114 -35.22115 -34.56635 -32.53694 -31.21840 -30.40821 -27.54214 -27.22495 -25.70147 -23.59481 -23.48099 -22.28874 -20.61331 -19.21552 -18.37614 -17.16485 -16.16182 -15.79574 -15.41539 -14.99216 -14.45279 -14.13112 -14.02698 -13.91784 -13.65944 -13.19941 -12.83549 -12.50513 -12.33178 -12.26306 -12.02947 -11.83987 -11.58679 -11.31337 -11.21964 -11.08841 -10.94470 -10.92883 -10.70053 -10.61460 -10.35394 -9.94982 -9.82386 -9.52568 -9.44172 -8.90456 -8.46220 -8.37268 -7.24346 -6.04215 -4.08757 2.77942 3.18406 3.28361 3.34018 3.35883 4.36141 4.50392 4.76810 4.80095 4.91166 5.17201 5.26775 5.39065 5.42228 5.49280 5.54655 5.60904 5.68526 5.73742 5.76683 5.82224 5.92815 6.05796 6.07846 6.16223 6.32455 6.39161 6.46071 6.48978 6.55042 6.71551 6.74903 7.05745 7.23296 7.32051 7.57964 7.60963 7.69714 7.78754 8.11036 8.28327 8.33585 8.51641 8.95854 9.55578 11.01895 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027429 B = 0.005022 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.582613 B = 5573.657056 C = 6174.446673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.116 4.116 3 C 0.218 3.782 4 H -0.003 1.003 5 C -0.497 4.497 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.527 5.527 14 C 0.049 3.951 15 C 0.108 3.892 16 N -0.606 5.606 17 C 0.516 3.484 18 O -0.553 6.553 19 C -0.116 4.116 20 C -0.130 4.130 21 C -0.146 4.146 22 C 0.117 3.883 23 C 0.036 3.964 24 H 0.016 0.984 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.014 0.986 28 H 0.094 0.906 29 H 0.261 0.739 30 H 0.023 0.977 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.023 0.977 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 8.638 -10.408 13.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.154 4.154 3 C 0.112 3.888 4 H 0.015 0.985 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.252 5.252 14 C -0.080 4.080 15 C -0.014 4.014 16 N -0.339 5.339 17 C 0.304 3.696 18 O -0.432 6.432 19 C -0.137 4.137 20 C -0.188 4.188 21 C -0.203 4.203 22 C -0.005 4.005 23 C -0.093 4.093 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.033 0.967 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.041 0.959 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.888 8.185 -10.712 13.787 hybrid contribution 0.686 0.261 0.991 1.233 sum -2.202 8.446 -9.721 13.065 Atomic orbital electron populations 1.21493 0.97214 0.97421 1.01883 1.21639 0.95132 0.98244 1.00383 1.19255 0.92193 0.90596 0.86714 0.98528 1.20978 1.30945 1.12014 0.89583 0.92050 1.24904 0.95152 0.95075 0.98978 1.69861 1.35638 1.22247 1.25403 0.86623 0.78926 0.79456 0.82752 1.20248 1.21448 1.20403 1.62087 1.59069 1.01459 1.02593 1.22328 0.95186 0.91979 0.98532 1.22090 1.01735 0.94168 0.83448 1.48241 1.64868 1.12049 1.08775 1.20656 0.76475 0.89763 0.82689 1.90647 1.53990 1.64420 1.34115 1.21285 0.99507 0.92226 1.00717 1.21597 1.01207 1.00667 0.95325 1.21852 0.96091 0.99600 1.02779 1.21761 0.99184 0.80329 0.99274 1.22500 0.97457 0.98825 0.90517 0.96497 0.92647 0.93473 0.96707 0.88744 0.92915 0.95899 0.88471 0.90060 0.90702 0.88785 0.91921 0.92245 0.92270 0.91534 0.92236 0.91503 0.91156 0.89667 0.95886 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.24 37.16 0.34 -2.23 16 2 C -0.12 -2.65 4.93 -26.73 -0.13 -2.79 16 3 C 0.22 5.16 1.77 -68.87 -0.12 5.04 16 4 H 0.00 -0.08 8.13 -51.93 -0.42 -0.50 16 5 C -0.50 -12.62 6.86 -34.44 -0.24 -12.85 16 6 H 0.06 1.55 7.04 -52.49 -0.37 1.18 16 7 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 8 N -0.89 -24.48 11.30 55.43 0.63 -23.85 16 9 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.53 -10.43 3.61 -227.74 -0.82 -11.26 16 14 C 0.05 0.86 5.45 -3.70 -0.02 0.84 16 15 C 0.11 1.50 5.19 -3.60 -0.02 1.49 16 16 N -0.61 -9.19 3.01 -172.46 -0.52 -9.71 16 17 C 0.52 7.82 7.00 -10.99 -0.08 7.74 16 18 O -0.55 -10.16 15.43 5.55 0.09 -10.07 16 19 C -0.12 -1.30 2.41 -91.77 -0.22 -1.53 16 20 C -0.13 -1.38 8.52 37.16 0.32 -1.06 16 21 C -0.15 -1.35 8.86 37.15 0.33 -1.02 16 22 C 0.12 1.87 6.61 -3.60 -0.02 1.84 16 23 C 0.04 0.65 4.81 -3.70 -0.02 0.63 16 24 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 26 H 0.05 0.93 6.72 -51.93 -0.35 0.59 16 27 H 0.01 0.31 6.39 -51.93 -0.33 -0.02 16 28 H 0.09 2.45 5.98 -51.93 -0.31 2.14 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 1.80 6.58 -51.93 -0.34 1.46 16 32 H 0.08 0.91 5.06 -51.93 -0.26 0.65 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.96 7.10 -51.93 -0.37 0.59 16 35 H 0.06 0.71 8.01 -51.93 -0.42 0.30 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.61 6.04 -51.93 -0.31 0.29 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.38 7.05 -51.93 -0.37 1.02 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 1.61 5.36 -51.93 -0.28 1.33 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -28.65 329.74 -8.12 -36.76 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.46 Total: 0.13 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 0.03 Total: -2.41 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.72 Total: -44.81 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.65 -8.12 -36.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.821 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds