Wall clock time and date at job start Mon Mar 30 2020 19:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46985 * 2 1 4 4 H 1.09002 * 109.46792 * 183.72605 * 3 2 1 5 5 C 1.50697 * 109.46777 * 63.72987 * 3 2 1 6 6 H 1.08000 * 119.99862 * 239.99664 * 5 3 2 7 7 C 1.37877 * 120.00353 * 60.00003 * 5 3 2 8 8 N 1.31518 * 119.99823 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00151 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47228 * 59.99781 * 9 7 5 11 11 H 1.48504 * 109.47255 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47194 * 299.99889 * 9 7 5 13 13 N 1.46891 * 109.47275 * 303.72887 * 3 2 1 14 14 C 1.46899 * 111.00210 * 184.48709 * 13 3 2 15 15 C 1.53235 * 109.34445 * 187.25385 * 14 13 3 16 16 N 1.47079 * 108.52232 * 306.17217 * 15 14 13 17 17 C 1.34779 * 120.88060 * 230.91571 * 16 15 14 18 18 O 1.21286 * 120.00106 * 176.81255 * 17 16 15 19 19 C 1.50696 * 119.99863 * 356.80116 * 17 16 15 20 20 C 1.53008 * 109.46810 * 172.25671 * 19 17 16 21 21 C 1.52991 * 109.47547 * 292.25975 * 19 17 16 22 22 C 1.47081 * 118.23960 * 51.17600 * 16 15 14 23 23 C 1.46899 * 111.00101 * 308.78662 * 13 3 2 24 24 H 1.09004 * 109.46985 * 174.77064 * 1 2 3 25 25 H 1.09000 * 109.47032 * 294.77145 * 1 2 3 26 26 H 1.08995 * 109.47275 * 54.77349 * 1 2 3 27 27 H 1.09003 * 109.46714 * 240.00484 * 2 1 3 28 28 H 1.08995 * 109.47637 * 120.00421 * 2 1 3 29 29 H 0.96995 * 119.99856 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.49621 * 67.29315 * 14 13 3 31 31 H 1.09004 * 109.49026 * 307.21503 * 14 13 3 32 32 H 1.09002 * 109.63376 * 186.45769 * 15 14 13 33 33 H 1.09004 * 109.63109 * 65.87299 * 15 14 13 34 34 H 1.08997 * 109.47174 * 52.26507 * 19 17 16 35 35 H 1.08995 * 109.47017 * 60.00714 * 20 19 17 36 36 H 1.09005 * 109.46955 * 180.02562 * 20 19 17 37 37 H 1.08997 * 109.47154 * 300.00075 * 20 19 17 38 38 H 1.09005 * 109.47279 * 185.38248 * 21 19 17 39 39 H 1.09001 * 109.47210 * 305.38166 * 21 19 17 40 40 H 1.09004 * 109.47247 * 65.37973 * 21 19 17 41 41 H 1.09007 * 109.62206 * 68.53248 * 22 16 15 42 42 H 1.09004 * 109.63009 * 189.10933 * 22 16 15 43 43 H 1.08994 * 109.49748 * 292.70614 * 23 13 3 44 44 H 1.09001 * 109.49358 * 52.78973 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1280 1.4432 -0.0668 5 6 1.6145 2.1257 1.2741 6 1 0.9893 3.0053 1.2323 7 6 2.0234 1.6278 2.4931 8 7 2.7844 0.5564 2.5439 9 14 1.4965 2.4750 4.0723 10 1 0.0143 2.4746 4.1635 11 1 2.0639 1.7488 5.2368 12 1 1.9920 3.8750 4.0721 13 7 1.4782 2.1605 -1.1518 14 6 2.0292 3.5191 -1.2451 15 6 1.2898 4.2925 -2.3420 16 7 1.3492 3.5104 -3.5862 17 6 1.7609 4.0746 -4.7389 18 8 1.8590 3.4010 -5.7427 19 6 2.0990 5.5426 -4.7806 20 6 2.7168 5.8853 -6.1378 21 6 0.8253 6.3654 -4.5777 22 6 0.9420 2.0978 -3.5405 23 6 1.6952 1.4109 -2.3963 24 1 -0.3633 -1.0234 -0.0937 25 1 -0.3633 0.4306 0.9331 26 1 -0.3633 0.5927 -0.8394 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.0718 0.2059 3.4015 30 1 3.0900 3.4654 -1.4900 31 1 1.9013 4.0298 -0.2907 32 1 1.7685 5.2598 -2.4943 33 1 0.2496 4.4374 -2.0502 34 1 2.8111 5.7740 -3.9885 35 1 2.0047 5.6539 -6.9299 36 1 2.9618 6.9470 -6.1678 37 1 3.6243 5.2991 -6.2823 38 1 1.0527 7.4241 -4.7027 39 1 0.0779 6.0651 -5.3121 40 1 0.4375 6.1932 -3.5736 41 1 -0.1316 2.0319 -3.3638 42 1 1.1908 1.6142 -4.4851 43 1 2.7605 1.3865 -2.6253 44 1 1.3250 0.3927 -2.2769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:25 Heat of formation + Delta-G solvation = -52.059115 kcal Electronic energy + Delta-G solvation = -22020.757114 eV Core-core repulsion = 18972.203165 eV Total energy + Delta-G solvation = -3048.553949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.39892 -39.43711 -36.75253 -35.56112 -34.28640 -32.85159 -31.89103 -29.15682 -28.02314 -27.34466 -25.15458 -24.86007 -23.68095 -21.99988 -20.82610 -19.64162 -18.39475 -18.07046 -17.08738 -16.84510 -16.42188 -16.01614 -15.62578 -15.45264 -15.18571 -14.97315 -14.69930 -14.05433 -14.01873 -13.71296 -13.42470 -13.13740 -13.03937 -12.89098 -12.79689 -12.73256 -12.44760 -12.36004 -12.34389 -12.05261 -12.01153 -11.91193 -11.73345 -11.57940 -11.29323 -10.83496 -10.63789 -10.41238 -9.71666 -8.92975 -8.04888 -6.15468 1.46659 1.48170 1.54733 1.61242 2.00973 2.46165 3.21210 3.30325 3.47984 3.93337 4.03866 4.07139 4.09421 4.26105 4.29277 4.39910 4.46536 4.59726 4.65146 4.74599 4.77495 4.78240 4.85326 4.88869 4.91574 4.95144 5.01917 5.07196 5.11552 5.27261 5.31503 5.34805 5.42312 5.44653 5.53210 5.74971 5.77691 5.87647 6.33912 6.34767 6.48565 6.69997 6.96555 7.14830 7.52656 9.00360 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027429 B = 0.005022 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.582613 B = 5573.657056 C = 6174.446673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.113 4.113 3 C 0.224 3.776 4 H -0.048 1.048 5 C -0.499 4.499 6 H 0.063 0.937 7 C 0.013 3.987 8 N -0.923 5.923 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.270 1.270 13 N -0.525 5.525 14 C 0.047 3.953 15 C 0.120 3.880 16 N -0.610 5.610 17 C 0.510 3.490 18 O -0.590 6.590 19 C -0.113 4.113 20 C -0.128 4.128 21 C -0.141 4.141 22 C 0.124 3.876 23 C 0.042 3.958 24 H 0.037 0.963 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.063 0.937 29 H 0.258 0.742 30 H 0.008 0.992 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.004 0.996 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 10.841 -10.767 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.151 4.151 3 C 0.118 3.882 4 H -0.031 1.031 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.218 1.218 12 H -0.195 1.195 13 N -0.250 5.250 14 C -0.082 4.082 15 C -0.002 4.002 16 N -0.342 5.342 17 C 0.300 3.700 18 O -0.472 6.472 19 C -0.134 4.134 20 C -0.186 4.186 21 C -0.199 4.199 22 C 0.001 3.999 23 C -0.087 4.087 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.106 0.894 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.023 0.977 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.202 10.416 -11.078 15.776 hybrid contribution 1.145 -0.447 1.051 1.617 sum -3.057 9.968 -10.028 14.466 Atomic orbital electron populations 1.21343 0.95270 0.98826 1.01173 1.21520 0.96716 0.97552 0.99333 1.19030 0.89599 0.91581 0.88031 1.03082 1.21206 1.30365 1.11879 0.90310 0.91868 1.25638 0.95289 0.95640 1.01990 1.70016 1.36878 1.23625 1.25775 0.85668 0.78628 0.78659 0.79001 1.19664 1.21814 1.19515 1.62058 1.58467 1.02284 1.02144 1.22393 0.94971 0.91098 0.99752 1.22109 1.02228 0.94496 0.81384 1.48346 1.64737 1.11740 1.09412 1.21453 0.75309 0.91346 0.81867 1.90631 1.55438 1.65697 1.35385 1.21387 1.00995 0.89383 1.01616 1.21603 1.00109 1.02287 0.94611 1.21857 0.94593 1.00627 1.02791 1.21611 0.99387 0.81021 0.97861 1.22476 0.96707 0.99070 0.90463 0.94399 0.94697 0.92271 0.95653 0.91894 0.93243 0.97351 0.89367 0.86654 0.89426 0.87163 0.93115 0.89256 0.93786 0.88964 0.93073 0.90976 0.89959 0.90033 0.97730 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.46 9.24 71.98 0.67 -3.80 16 2 C -0.11 -5.25 4.93 30.60 0.15 -5.10 16 3 C 0.22 10.85 1.77 44.17 0.08 10.93 16 4 H -0.05 -2.72 8.13 -2.39 -0.02 -2.74 16 5 C -0.50 -25.53 6.86 25.60 0.18 -25.36 16 6 H 0.06 3.16 7.04 -2.91 -0.02 3.14 16 7 C 0.01 0.67 5.30 84.65 0.45 1.12 16 8 N -0.92 -51.89 11.30 21.45 0.24 -51.65 16 9 Si 0.95 41.90 29.54 68.60 2.03 43.93 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 13 N -0.52 -20.67 3.61 -874.44 -3.16 -23.83 16 14 C 0.05 1.62 5.45 86.38 0.47 2.09 16 15 C 0.12 3.02 5.19 86.35 0.45 3.47 16 16 N -0.61 -17.41 3.01 -817.92 -2.46 -19.87 16 17 C 0.51 14.64 7.00 87.66 0.61 15.25 16 18 O -0.59 -21.38 15.43 -3.05 -0.05 -21.43 16 19 C -0.11 -2.21 2.41 -11.54 -0.03 -2.24 16 20 C -0.13 -2.44 8.52 71.98 0.61 -1.82 16 21 C -0.14 -2.08 8.86 71.98 0.64 -1.45 16 22 C 0.12 3.82 6.61 86.35 0.57 4.39 16 23 C 0.04 1.50 4.81 86.38 0.42 1.92 16 24 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.03 1.55 7.51 -2.39 -0.02 1.53 16 26 H 0.06 2.25 6.72 -2.39 -0.02 2.24 16 27 H 0.02 1.09 6.39 -2.39 -0.02 1.08 16 28 H 0.06 3.36 5.98 -2.39 -0.01 3.35 16 29 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.09 3.21 6.58 -2.39 -0.02 3.19 16 32 H 0.12 2.14 5.06 -2.39 -0.01 2.13 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.11 1.84 7.10 -2.39 -0.02 1.82 16 35 H 0.05 1.08 8.01 -2.39 -0.02 1.06 16 36 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 1.00 6.04 -2.38 -0.01 0.98 16 41 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 42 H 0.08 2.60 7.05 -2.38 -0.02 2.59 16 43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.09 3.16 5.36 -2.39 -0.01 3.15 16 Total: -1.00 -63.36 329.74 2.83 -60.53 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.96 Total: 12.93 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 5.26 Total: -0.61 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -5.38 Total: -95.35 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.05 Total: -21.43 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -63.36 2.83 -60.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.469 kcal (2) G-P(sol) polarization free energy of solvation -63.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds