Wall clock time and date at job start Mon Mar 30 2020 19:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47150 * 2 1 4 4 H 1.09005 * 109.47360 * 305.00145 * 3 2 1 5 5 C 1.53005 * 109.46976 * 65.00299 * 3 2 1 6 6 C 1.50697 * 109.47364 * 185.00144 * 3 2 1 7 7 O 1.21280 * 120.00065 * 0.02562 * 6 3 2 8 8 N 1.34779 * 120.00446 * 180.02562 * 6 3 2 9 9 C 1.46494 * 120.00258 * 180.02562 * 8 6 3 10 10 C 1.53005 * 109.47367 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47350 * 180.02562 * 10 9 8 12 12 N 1.46502 * 109.46966 * 180.02562 * 11 10 9 13 13 C 1.36937 * 119.99574 * 269.99799 * 12 11 10 14 14 H 1.08004 * 120.00097 * 144.92948 * 13 12 11 15 15 C 1.38808 * 120.00075 * 324.92252 * 13 12 11 16 16 N 1.31619 * 120.00301 * 337.94386 * 15 13 12 17 17 Si 1.86804 * 119.99818 * 157.94058 * 15 13 12 18 18 H 1.48499 * 109.47200 * 90.00148 * 17 15 13 19 19 H 1.48501 * 109.46922 * 210.00520 * 17 15 13 20 20 H 1.48497 * 109.47056 * 330.00084 * 17 15 13 21 21 C 1.46495 * 120.00181 * 90.00195 * 12 11 10 22 22 C 1.53001 * 117.50060 * 183.24122 * 21 12 11 23 23 C 1.52993 * 117.50414 * 114.57811 * 21 12 11 24 24 H 1.08996 * 109.47561 * 59.99553 * 1 2 3 25 25 H 1.09005 * 109.47409 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46986 * 299.99371 * 1 2 3 27 27 H 1.09006 * 109.46986 * 240.00629 * 2 1 3 28 28 H 1.08996 * 109.47561 * 120.00447 * 2 1 3 29 29 H 1.09001 * 109.47223 * 299.99926 * 5 3 2 30 30 H 1.08999 * 109.46639 * 60.00121 * 5 3 2 31 31 H 1.09005 * 109.46862 * 179.97438 * 5 3 2 32 32 H 0.97004 * 119.99485 * 359.97438 * 8 6 3 33 33 H 1.08999 * 109.47486 * 300.00467 * 9 8 6 34 34 H 1.09005 * 109.47219 * 60.00561 * 9 8 6 35 35 H 1.09002 * 109.46994 * 300.00378 * 10 9 8 36 36 H 1.09005 * 109.46495 * 59.99681 * 10 9 8 37 37 H 1.09002 * 109.47196 * 300.00028 * 11 10 9 38 38 H 1.08993 * 109.47174 * 60.00338 * 11 10 9 39 39 H 0.97002 * 119.99950 * 176.06392 * 16 15 13 40 40 H 1.09004 * 115.54767 * 328.90246 * 21 12 11 41 41 H 1.09006 * 117.49495 * 359.97438 * 22 21 12 42 42 H 1.09000 * 117.50346 * 145.01527 * 22 21 12 43 43 H 1.09003 * 117.49798 * 214.97745 * 23 21 12 44 44 H 1.08999 * 117.49583 * 359.97071 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5418 1.4443 -0.1239 7 8 4.1449 0.3952 -0.2047 8 7 4.2149 2.6118 -0.1448 9 6 5.6749 2.6136 -0.2658 10 6 6.1849 4.0561 -0.2657 11 6 7.7096 4.0580 -0.3927 12 7 8.1980 5.4392 -0.3919 13 6 8.3278 6.1201 -1.5729 14 1 8.1270 7.1806 -1.6097 15 6 8.7176 5.4472 -2.7227 16 7 9.3682 4.3069 -2.6294 17 14 8.3186 6.1601 -4.4027 18 1 9.4287 7.0433 -4.8420 19 1 8.1475 5.0561 -5.3809 20 1 7.0624 6.9477 -4.3205 21 6 8.5475 6.0919 0.8722 22 6 8.9789 7.5587 0.8143 23 6 10.0145 6.4663 1.0920 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5489 2.1252 1.3971 30 1 2.0699 1.5874 2.1491 31 1 1.9990 3.1540 1.3076 32 1 3.7325 3.4509 -0.0805 33 1 6.1099 2.0739 0.5754 34 1 5.9628 2.1270 -1.1977 35 1 5.7499 4.5954 -1.1072 36 1 5.8969 4.5432 0.6660 37 1 8.1450 3.5186 0.4486 38 1 7.9972 3.5711 -1.3244 39 1 9.5904 3.8082 -3.4313 40 1 7.9745 5.7698 1.7417 41 1 9.0030 8.0379 -0.1645 42 1 8.6901 8.2015 1.6458 43 1 10.4066 6.3908 2.1063 44 1 10.7198 6.2265 0.2963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265153915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:39:00 Heat of formation + Delta-G solvation = -16.072555 kcal Electronic energy + Delta-G solvation = -20647.331866 eV Core-core repulsion = 17600.338412 eV Total energy + Delta-G solvation = -3046.993454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.79191 -37.16073 -35.73438 -35.07376 -33.56490 -31.62948 -30.13266 -29.04192 -25.79258 -25.03138 -23.52741 -21.61651 -21.38629 -20.97088 -19.82308 -19.40998 -16.96467 -16.45564 -15.74677 -15.68028 -15.33902 -14.86530 -14.55651 -14.09084 -13.92481 -13.66069 -13.44859 -12.78208 -12.63410 -12.33560 -12.18039 -11.97447 -11.83655 -11.70391 -11.45671 -11.01895 -10.97432 -10.83688 -10.80435 -10.73708 -10.66515 -10.21637 -10.06979 -9.69833 -9.57643 -9.51865 -9.26327 -8.79516 -8.48428 -6.59281 -5.81044 -3.41643 2.80065 3.31806 3.38624 3.41166 3.42945 4.42416 4.58352 4.70092 4.77373 4.92000 5.14719 5.17006 5.21267 5.30498 5.31432 5.39379 5.61822 5.66999 5.69885 5.76403 5.79823 5.90103 5.90837 6.02683 6.08582 6.12081 6.20529 6.26678 6.40038 6.42616 6.48666 6.65164 6.69200 6.80530 7.02615 7.10535 7.21700 7.66064 7.70881 7.77840 8.40205 8.45064 9.12731 9.76100 10.31741 11.14766 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.003994 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.089875 B = 7009.524150 C = 7781.027446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.113 4.113 4 H 0.095 0.905 5 C -0.145 4.145 6 C 0.510 3.490 7 O -0.545 6.545 8 N -0.726 5.726 9 C 0.120 3.880 10 C -0.144 4.144 11 C 0.149 3.851 12 N -0.552 5.552 13 C -0.259 4.259 14 H 0.066 0.934 15 C 0.011 3.989 16 N -0.882 5.882 17 Si 0.895 3.105 18 H -0.285 1.285 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.121 3.879 22 C -0.197 4.197 23 C -0.222 4.222 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.398 0.602 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.028 0.972 38 H 0.102 0.898 39 H 0.255 0.745 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 -3.022 6.789 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.134 4.134 4 H 0.113 0.887 5 C -0.202 4.202 6 C 0.296 3.704 7 O -0.423 6.423 8 N -0.377 5.377 9 C -0.003 4.003 10 C -0.185 4.185 11 C 0.022 3.978 12 N -0.269 5.269 13 C -0.388 4.388 14 H 0.083 0.917 15 C -0.189 4.189 16 N -0.524 5.524 17 Si 0.723 3.277 18 H -0.212 1.212 19 H -0.214 1.214 20 H -0.203 1.203 21 C 0.012 3.988 22 C -0.235 4.235 23 C -0.263 4.263 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.232 0.768 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.120 0.880 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.196 -3.886 6.570 16.118 hybrid contribution -0.266 0.871 -0.892 1.274 sum -14.462 -3.015 5.678 15.827 Atomic orbital electron populations 1.21847 0.95661 1.01758 1.01788 1.21330 0.95115 0.94382 1.03501 1.21363 0.92363 0.99253 1.00421 0.88687 1.21824 1.02089 1.00344 0.95976 1.20664 0.89807 0.83838 0.76072 1.90688 1.70408 1.31514 1.49671 1.46200 1.08757 1.08366 1.74335 1.21442 0.78097 0.98997 1.01793 1.22431 1.01712 0.93007 1.01321 1.20859 0.87890 0.86150 1.02873 1.43413 1.71671 1.11330 1.00437 1.19047 1.40105 0.94071 0.85625 0.91689 1.25122 0.96945 0.98047 0.98809 1.70037 1.37620 1.16563 1.28229 0.86444 0.78512 0.78384 0.84310 1.21227 1.21416 1.20330 1.21218 0.93297 0.93786 0.90539 1.23031 1.05946 0.92594 1.01918 1.23363 0.96368 1.06339 1.00263 0.92748 0.92582 0.92502 0.91145 0.91378 0.91345 0.92100 0.92104 0.76812 0.92057 0.91563 0.91603 0.93245 0.95396 0.88004 0.93470 0.89650 0.88527 0.90820 0.91264 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 37.16 0.36 -0.81 16 2 C -0.11 -1.08 4.75 -26.73 -0.13 -1.20 16 3 C -0.11 -1.15 2.72 -91.77 -0.25 -1.40 16 4 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 5 C -0.14 -1.19 8.84 37.16 0.33 -0.86 16 6 C 0.51 7.38 7.15 -10.99 -0.08 7.31 16 7 O -0.55 -10.15 15.92 5.56 0.09 -10.06 16 8 N -0.73 -10.08 5.45 -60.30 -0.33 -10.41 16 9 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16 10 C -0.14 -2.62 5.65 -26.73 -0.15 -2.77 16 11 C 0.15 3.32 5.34 -4.04 -0.02 3.30 16 12 N -0.55 -13.25 2.78 -165.67 -0.46 -13.71 16 13 C -0.26 -6.79 8.63 -15.06 -0.13 -6.92 16 14 H 0.07 1.71 6.55 -52.48 -0.34 1.36 16 15 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 16 N -0.88 -24.78 11.33 55.49 0.63 -24.15 16 17 Si 0.89 21.06 29.61 -169.99 -5.03 16.03 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.12 2.54 6.56 -67.94 -0.45 2.10 16 22 C -0.20 -3.84 9.80 -26.69 -0.26 -4.10 16 23 C -0.22 -4.53 10.36 -26.70 -0.28 -4.81 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 27 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.45 6.57 -51.93 -0.34 0.11 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 32 H 0.40 4.51 7.89 -40.82 -0.32 4.18 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 38 H 0.10 2.60 5.36 -51.93 -0.28 2.33 16 39 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 40 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.10 2.05 6.37 -51.93 -0.33 1.72 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -29.98 353.57 -8.75 -38.74 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.81 Total: 6.20 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.16 Total: -7.96 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.16 Total: -48.27 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.98 -8.75 -38.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265153915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.665 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds