Wall clock time and date at job start Mon Mar 30 2020 19:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47150 * 2 1 4 4 H 1.09005 * 109.47360 * 305.00145 * 3 2 1 5 5 C 1.53005 * 109.46976 * 65.00299 * 3 2 1 6 6 C 1.50697 * 109.47364 * 185.00144 * 3 2 1 7 7 O 1.21280 * 120.00065 * 0.02562 * 6 3 2 8 8 N 1.34779 * 120.00446 * 180.02562 * 6 3 2 9 9 C 1.46494 * 120.00258 * 180.02562 * 8 6 3 10 10 C 1.53005 * 109.47367 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47350 * 180.02562 * 10 9 8 12 12 N 1.46502 * 109.46966 * 180.02562 * 11 10 9 13 13 C 1.36937 * 119.99574 * 269.99799 * 12 11 10 14 14 H 1.08004 * 120.00097 * 144.92948 * 13 12 11 15 15 C 1.38808 * 120.00075 * 324.92252 * 13 12 11 16 16 N 1.31619 * 120.00301 * 337.94386 * 15 13 12 17 17 Si 1.86804 * 119.99818 * 157.94058 * 15 13 12 18 18 H 1.48499 * 109.47200 * 90.00148 * 17 15 13 19 19 H 1.48501 * 109.46922 * 210.00520 * 17 15 13 20 20 H 1.48497 * 109.47056 * 330.00084 * 17 15 13 21 21 C 1.46495 * 120.00181 * 90.00195 * 12 11 10 22 22 C 1.53001 * 117.50060 * 183.24122 * 21 12 11 23 23 C 1.52993 * 117.50414 * 114.57811 * 21 12 11 24 24 H 1.08996 * 109.47561 * 59.99553 * 1 2 3 25 25 H 1.09005 * 109.47409 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46986 * 299.99371 * 1 2 3 27 27 H 1.09006 * 109.46986 * 240.00629 * 2 1 3 28 28 H 1.08996 * 109.47561 * 120.00447 * 2 1 3 29 29 H 1.09001 * 109.47223 * 299.99926 * 5 3 2 30 30 H 1.08999 * 109.46639 * 60.00121 * 5 3 2 31 31 H 1.09005 * 109.46862 * 179.97438 * 5 3 2 32 32 H 0.97004 * 119.99485 * 359.97438 * 8 6 3 33 33 H 1.08999 * 109.47486 * 300.00467 * 9 8 6 34 34 H 1.09005 * 109.47219 * 60.00561 * 9 8 6 35 35 H 1.09002 * 109.46994 * 300.00378 * 10 9 8 36 36 H 1.09005 * 109.46495 * 59.99681 * 10 9 8 37 37 H 1.09002 * 109.47196 * 300.00028 * 11 10 9 38 38 H 1.08993 * 109.47174 * 60.00338 * 11 10 9 39 39 H 0.97002 * 119.99950 * 176.06392 * 16 15 13 40 40 H 1.09004 * 115.54767 * 328.90246 * 21 12 11 41 41 H 1.09006 * 117.49495 * 359.97438 * 22 21 12 42 42 H 1.09000 * 117.50346 * 145.01527 * 22 21 12 43 43 H 1.09003 * 117.49798 * 214.97745 * 23 21 12 44 44 H 1.08999 * 117.49583 * 359.97071 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5418 1.4443 -0.1239 7 8 4.1449 0.3952 -0.2047 8 7 4.2149 2.6118 -0.1448 9 6 5.6749 2.6136 -0.2658 10 6 6.1849 4.0561 -0.2657 11 6 7.7096 4.0580 -0.3927 12 7 8.1980 5.4392 -0.3919 13 6 8.3278 6.1201 -1.5729 14 1 8.1270 7.1806 -1.6097 15 6 8.7176 5.4472 -2.7227 16 7 9.3682 4.3069 -2.6294 17 14 8.3186 6.1601 -4.4027 18 1 9.4287 7.0433 -4.8420 19 1 8.1475 5.0561 -5.3809 20 1 7.0624 6.9477 -4.3205 21 6 8.5475 6.0919 0.8722 22 6 8.9789 7.5587 0.8143 23 6 10.0145 6.4663 1.0920 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5489 2.1252 1.3971 30 1 2.0699 1.5874 2.1491 31 1 1.9990 3.1540 1.3076 32 1 3.7325 3.4509 -0.0805 33 1 6.1099 2.0739 0.5754 34 1 5.9628 2.1270 -1.1977 35 1 5.7499 4.5954 -1.1072 36 1 5.8969 4.5432 0.6660 37 1 8.1450 3.5186 0.4486 38 1 7.9972 3.5711 -1.3244 39 1 9.5904 3.8082 -3.4313 40 1 7.9745 5.7698 1.7417 41 1 9.0030 8.0379 -0.1645 42 1 8.6901 8.2015 1.6458 43 1 10.4066 6.3908 2.1063 44 1 10.7198 6.2265 0.2963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265153915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:59 Heat of formation + Delta-G solvation = -33.558021 kcal Electronic energy + Delta-G solvation = -20648.090093 eV Core-core repulsion = 17600.338412 eV Total energy + Delta-G solvation = -3047.751681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.95988 -38.87377 -36.86274 -36.25149 -35.26555 -33.33620 -31.42581 -30.23255 -27.26816 -26.18170 -25.06833 -23.08428 -22.62710 -22.42289 -21.49844 -20.58078 -18.27874 -18.04359 -17.33827 -16.94084 -16.70379 -16.37483 -16.01364 -15.54879 -15.19285 -14.77838 -14.41375 -14.39547 -13.91732 -13.71818 -13.52802 -13.21510 -12.95377 -12.77690 -12.59218 -12.55547 -12.51669 -12.44018 -12.27460 -12.03725 -11.83554 -11.69075 -11.58109 -11.43976 -11.29728 -10.91813 -10.71744 -10.46555 -10.08372 -8.53619 -7.79744 -5.44884 1.43501 1.47125 1.55521 1.65312 2.22889 2.49892 3.15199 3.41401 3.50848 3.71504 3.87851 4.00360 4.17482 4.26425 4.32202 4.42654 4.46858 4.53957 4.55420 4.60142 4.62838 4.75317 4.76543 4.93309 4.95159 4.99259 5.05721 5.07873 5.12376 5.13098 5.22495 5.36489 5.38101 5.46331 5.47705 5.52565 5.55096 5.68772 5.85551 6.44969 6.59100 7.15131 7.27497 7.86263 8.35589 9.11109 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.003994 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.089875 B = 7009.524150 C = 7781.027446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.104 4.104 4 H 0.117 0.883 5 C -0.141 4.141 6 C 0.505 3.495 7 O -0.593 6.593 8 N -0.715 5.715 9 C 0.133 3.867 10 C -0.120 4.120 11 C 0.148 3.852 12 N -0.569 5.569 13 C -0.257 4.257 14 H 0.063 0.937 15 C -0.038 4.038 16 N -0.916 5.916 17 Si 0.951 3.049 18 H -0.287 1.287 19 H -0.294 1.294 20 H -0.267 1.267 21 C 0.102 3.898 22 C -0.179 4.179 23 C -0.223 4.223 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.414 0.586 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.067 0.933 39 H 0.249 0.751 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.177 -1.470 8.188 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.125 4.125 4 H 0.135 0.865 5 C -0.199 4.199 6 C 0.293 3.707 7 O -0.474 6.474 8 N -0.367 5.367 9 C 0.008 3.992 10 C -0.160 4.160 11 C 0.021 3.979 12 N -0.287 5.287 13 C -0.388 4.388 14 H 0.081 0.919 15 C -0.235 4.235 16 N -0.560 5.560 17 Si 0.779 3.221 18 H -0.214 1.214 19 H -0.220 1.220 20 H -0.192 1.192 21 C -0.006 4.006 22 C -0.217 4.217 23 C -0.264 4.264 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.251 0.749 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.132 0.868 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.641 -2.287 7.990 18.601 hybrid contribution 0.535 0.389 -1.259 1.422 sum -16.107 -1.898 6.732 17.560 Atomic orbital electron populations 1.21807 0.93173 1.02467 1.02942 1.21327 0.97184 0.94094 1.01822 1.21415 0.88684 0.99834 1.02600 0.86541 1.21843 1.03625 1.00374 0.94016 1.21531 0.91661 0.82925 0.74593 1.90669 1.71759 1.33200 1.51757 1.46039 1.07476 1.09314 1.73888 1.21089 0.80046 0.97743 1.00350 1.22067 0.98451 0.93662 1.01813 1.20758 0.90603 0.85434 1.01074 1.43625 1.72368 1.11667 1.00998 1.19242 1.38696 0.94090 0.86744 0.91920 1.25767 0.97473 0.98569 1.01698 1.70175 1.39378 1.17959 1.28454 0.85551 0.78456 0.77447 0.80650 1.21383 1.22034 1.19196 1.21559 0.93975 0.94909 0.90199 1.23040 1.04394 0.92101 1.02205 1.23280 0.95390 1.07065 1.00648 0.91839 0.92234 0.90992 0.93339 0.92737 0.88937 0.93050 0.91033 0.74920 0.92452 0.94154 0.92737 0.91063 0.95347 0.91511 0.94128 0.86801 0.90752 0.86918 0.88102 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.67 71.98 0.70 -1.17 16 2 C -0.11 -2.07 4.75 30.59 0.15 -1.92 16 3 C -0.10 -1.93 2.72 -11.54 -0.03 -1.96 16 4 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 5 C -0.14 -1.89 8.84 71.98 0.64 -1.25 16 6 C 0.50 14.31 7.15 87.66 0.63 14.94 16 7 O -0.59 -22.60 15.92 -3.03 -0.05 -22.64 16 8 N -0.72 -19.07 5.45 -463.06 -2.52 -21.59 16 9 C 0.13 4.44 5.67 86.38 0.49 4.93 16 10 C -0.12 -4.26 5.65 30.59 0.17 -4.08 16 11 C 0.15 6.67 5.34 86.38 0.46 7.13 16 12 N -0.57 -27.23 2.78 -678.06 -1.88 -29.12 16 13 C -0.26 -13.57 8.63 84.03 0.72 -12.85 16 14 H 0.06 3.29 6.55 -2.91 -0.02 3.27 16 15 C -0.04 -2.06 4.96 84.86 0.42 -1.64 16 16 N -0.92 -53.20 11.33 21.65 0.25 -52.96 16 17 Si 0.95 43.95 29.61 68.60 2.03 45.98 16 18 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 21 C 0.10 4.10 6.56 44.99 0.30 4.39 16 22 C -0.18 -6.58 9.80 30.62 0.30 -6.28 16 23 C -0.22 -8.78 10.36 30.62 0.32 -8.47 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.07 0.71 6.57 -2.38 -0.02 0.70 16 27 H 0.05 1.14 7.96 -2.38 -0.02 1.12 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 0.83 6.57 -2.39 -0.02 0.82 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.82 7.56 -2.38 -0.02 0.80 16 32 H 0.41 8.38 7.89 -92.71 -0.73 7.65 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 38 H 0.07 3.56 5.36 -2.39 -0.01 3.54 16 39 H 0.25 14.16 8.32 -92.71 -0.77 13.39 16 40 H 0.11 3.92 8.14 -2.38 -0.02 3.90 16 41 H 0.07 3.08 6.37 -2.38 -0.02 3.06 16 42 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.10 3.30 8.14 -2.39 -0.02 3.29 16 44 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -67.24 353.57 3.31 -63.93 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.23 Total: 24.63 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.26 Total: -8.24 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -4.16 Total: -103.66 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.24 3.31 -63.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265153915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.374 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds