Wall clock time and date at job start Mon Mar 30 2020 19:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47100 * 2 1 4 4 C 1.50704 * 109.47016 * 179.97438 * 3 2 1 5 5 O 1.21286 * 120.00023 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99838 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99521 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.46955 * 179.97438 * 7 6 4 9 9 C 1.52999 * 109.49489 * 59.93712 * 8 7 6 10 10 C 1.53041 * 109.50079 * 179.97438 * 8 7 6 11 11 C 1.53034 * 109.54113 * 181.35123 * 10 8 7 12 12 C 1.53188 * 109.31563 * 298.63887 * 11 10 8 13 13 N 1.46930 * 108.77638 * 54.63270 * 12 11 10 14 14 C 1.36933 * 120.63005 * 126.11603 * 13 12 11 15 15 H 1.08001 * 120.00321 * 331.87101 * 14 13 12 16 16 C 1.38815 * 119.99826 * 151.86766 * 14 13 12 17 17 N 1.31621 * 119.99984 * 343.17890 * 16 14 13 18 18 Si 1.86800 * 120.00122 * 163.17569 * 16 14 13 19 19 H 1.48504 * 109.46788 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47041 * 119.99977 * 18 16 14 21 21 H 1.48497 * 109.47258 * 240.00106 * 18 16 14 22 22 C 1.46924 * 118.73707 * 306.39604 * 13 12 11 23 23 H 1.09000 * 109.47208 * 60.00243 * 1 2 3 24 24 H 1.09000 * 109.47574 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47576 * 300.00410 * 1 2 3 26 26 H 1.08996 * 109.47063 * 239.99851 * 2 1 3 27 27 H 1.08998 * 109.46705 * 119.99884 * 2 1 3 28 28 H 1.09003 * 109.47600 * 59.99775 * 3 2 1 29 29 H 1.08998 * 109.47246 * 299.99552 * 3 2 1 30 30 H 0.96998 * 120.00407 * 0.02562 * 6 4 3 31 31 H 1.09005 * 109.47466 * 60.00524 * 7 6 4 32 32 H 1.09000 * 109.47540 * 299.99680 * 7 6 4 33 33 H 1.09002 * 109.47451 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.47561 * 300.06207 * 9 8 7 35 35 H 1.09001 * 109.47535 * 60.06638 * 9 8 7 36 36 H 1.09007 * 109.45781 * 61.33176 * 10 8 7 37 37 H 1.08998 * 109.45026 * 301.36882 * 10 8 7 38 38 H 1.09004 * 109.50047 * 178.68356 * 11 10 8 39 39 H 1.09007 * 109.49677 * 58.58847 * 11 10 8 40 40 H 1.09005 * 109.58673 * 294.84815 * 12 11 10 41 41 H 1.08998 * 109.59045 * 174.42087 * 12 11 10 42 42 H 0.97002 * 120.00123 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.58661 * 173.39307 * 22 13 12 44 44 H 1.09004 * 109.58394 * 293.81592 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 5.6859 2.6095 0.0003 8 6 6.1959 4.0520 -0.0009 9 6 5.6849 4.7753 1.2468 10 6 7.7263 4.0527 -0.0002 11 6 8.2375 5.4948 0.0327 12 6 7.7542 6.2324 -1.2200 13 7 6.2923 6.1121 -1.3052 14 6 5.5064 7.2271 -1.4242 15 1 5.8420 8.1702 -1.0188 16 6 4.2782 7.1452 -2.0660 17 7 4.0072 6.1152 -2.8392 18 14 3.0102 8.4968 -1.8321 19 1 3.5561 9.5355 -0.9220 20 1 2.6914 9.1093 -3.1468 21 1 1.7754 7.9204 -1.2421 22 6 5.6895 4.7732 -1.2539 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.7359 3.4497 -0.0001 31 1 6.0493 2.0954 -0.8896 32 1 6.0492 2.0961 0.8905 33 1 6.0481 5.8030 1.2454 34 1 4.5949 4.7746 1.2464 35 1 6.0482 4.2635 2.1379 36 1 8.0901 3.5590 -0.9014 37 1 8.0891 3.5188 0.8780 38 1 9.3273 5.4941 0.0567 39 1 7.8539 5.9967 0.9210 40 1 8.2096 5.7872 -2.1047 41 1 8.0311 7.2846 -1.1542 42 1 3.1491 6.0581 -3.2880 43 1 4.6040 4.8627 -1.2104 44 1 5.9765 4.2091 -2.1413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278641635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:45 Heat of formation + Delta-G solvation = -44.573600 kcal Electronic energy + Delta-G solvation = -21835.138992 eV Core-core repulsion = 18786.909640 eV Total energy + Delta-G solvation = -3048.229352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.65851 -38.31846 -34.86090 -34.18935 -33.18881 -31.37982 -29.91472 -28.16838 -26.46699 -25.43360 -25.06675 -22.32511 -21.69937 -20.49281 -19.90555 -17.98528 -16.89059 -16.52160 -15.76600 -15.57720 -14.95417 -14.33029 -14.06889 -13.92231 -13.70583 -13.45794 -13.20442 -12.95447 -12.76603 -12.38666 -12.22628 -11.92677 -11.72351 -11.53647 -11.31986 -11.16137 -10.98981 -10.87430 -10.71414 -10.66953 -10.40404 -10.18865 -10.10336 -9.84538 -9.68593 -9.42523 -9.37750 -8.64158 -8.51697 -6.68819 -5.83708 -3.26077 2.97029 3.31048 3.40677 3.42262 3.58702 4.44355 4.91741 4.98625 5.03723 5.15108 5.28027 5.44132 5.48434 5.50885 5.53696 5.58204 5.68617 5.75709 5.78331 5.96281 6.01732 6.05471 6.10891 6.17069 6.17368 6.27634 6.32351 6.40861 6.43814 6.54248 6.62931 6.78939 6.84353 6.89971 6.96415 7.03799 7.27956 7.56219 7.75031 7.89605 8.39796 8.56777 9.16636 9.79959 10.37771 11.24238 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.006494 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.665866 B = 4310.601786 C = 5797.233127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.143 4.143 4 C 0.510 3.490 5 O -0.556 6.556 6 N -0.719 5.719 7 C 0.136 3.864 8 C -0.103 4.103 9 C -0.125 4.125 10 C -0.095 4.095 11 C -0.135 4.135 12 C 0.143 3.857 13 N -0.589 5.589 14 C -0.248 4.248 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.898 3.102 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.186 3.814 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.406 0.594 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.035 0.965 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.017 0.983 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.088 0.912 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 -6.678 7.015 9.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.183 4.183 4 C 0.296 3.704 5 O -0.435 6.435 6 N -0.370 5.370 7 C 0.012 3.988 8 C -0.105 4.105 9 C -0.183 4.183 10 C -0.133 4.133 11 C -0.174 4.174 12 C 0.017 3.983 13 N -0.311 5.311 14 C -0.378 4.378 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.728 3.272 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.059 3.941 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.242 0.758 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -1.204 -7.411 6.904 10.199 hybrid contribution -0.909 1.128 -0.026 1.449 sum -2.113 -6.283 6.878 9.552 Atomic orbital electron populations 1.21801 0.95751 1.01635 1.01834 1.21246 0.94974 0.94970 1.03308 1.21722 0.92300 0.99816 1.04499 1.20688 0.90213 0.83678 0.75813 1.90653 1.70705 1.31502 1.50625 1.46133 1.07878 1.08798 1.74232 1.21344 0.79266 0.97160 1.01040 1.21540 0.95740 0.93217 1.00034 1.21717 0.99981 1.01393 0.95171 1.21346 0.94450 0.97057 1.00479 1.22050 0.98446 0.96101 1.00842 1.20933 0.86006 0.97669 0.93705 1.43988 0.99556 1.02717 1.84871 1.19215 0.99281 0.89529 1.29771 0.91722 1.25022 1.00086 0.97695 0.96779 1.70050 1.22860 1.31110 1.30621 0.86294 0.81751 0.81688 0.77513 1.20287 1.21765 1.21577 1.20787 0.99166 0.84079 0.90019 0.92607 0.92651 0.92790 0.91331 0.91502 0.89196 0.88736 0.75819 0.92035 0.92487 0.91010 0.93679 0.94586 0.92596 0.93433 0.93226 0.91973 0.96549 0.92943 0.93731 0.89385 0.96476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.11 -1.26 5.22 -26.74 -0.14 -1.40 16 3 C -0.14 -1.79 5.70 -27.88 -0.16 -1.94 16 4 C 0.51 8.25 7.83 -10.98 -0.09 8.16 16 5 O -0.56 -10.73 15.98 5.55 0.09 -10.65 16 6 N -0.72 -11.67 5.00 -60.29 -0.30 -11.98 16 7 C 0.14 2.30 4.57 -4.04 -0.02 2.28 16 8 C -0.10 -1.82 0.53 -154.39 -0.08 -1.90 16 9 C -0.13 -2.12 7.81 37.16 0.29 -1.83 16 10 C -0.10 -1.56 4.71 -26.69 -0.13 -1.69 16 11 C -0.14 -2.26 5.74 -26.62 -0.15 -2.41 16 12 C 0.14 2.90 6.52 -3.71 -0.02 2.88 16 13 N -0.59 -13.92 2.43 -172.32 -0.42 -14.34 16 14 C -0.25 -6.46 9.58 -15.06 -0.14 -6.61 16 15 H 0.07 1.68 7.88 -52.49 -0.41 1.26 16 16 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 17 N -0.90 -24.82 11.20 55.49 0.62 -24.20 16 18 Si 0.90 20.74 29.59 -169.99 -5.03 15.71 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 C 0.19 4.11 3.73 -3.71 -0.01 4.09 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 27 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.41 6.49 6.22 -40.82 -0.25 6.24 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.34 5.97 -51.93 -0.31 1.03 16 34 H 0.04 0.75 6.86 -51.93 -0.36 0.40 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.05 6.33 -51.92 -0.33 0.72 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 42 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 43 H 0.09 2.11 4.97 -51.93 -0.26 1.85 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -29.18 338.82 -8.11 -37.29 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.81 Total: 4.51 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.37 Total: -1.46 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.10 Total: -50.52 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.18 -8.11 -37.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278641635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.283 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds