Wall clock time and date at job start Mon Mar 30 2020 19:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47100 * 2 1 4 4 C 1.50704 * 109.47016 * 179.97438 * 3 2 1 5 5 O 1.21286 * 120.00023 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99838 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99521 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.46955 * 179.97438 * 7 6 4 9 9 C 1.52999 * 109.49489 * 59.93712 * 8 7 6 10 10 C 1.53041 * 109.50079 * 179.97438 * 8 7 6 11 11 C 1.53034 * 109.54113 * 181.35123 * 10 8 7 12 12 C 1.53188 * 109.31563 * 298.63887 * 11 10 8 13 13 N 1.46930 * 108.77638 * 54.63270 * 12 11 10 14 14 C 1.36933 * 120.63005 * 126.11603 * 13 12 11 15 15 H 1.08001 * 120.00321 * 331.87101 * 14 13 12 16 16 C 1.38815 * 119.99826 * 151.86766 * 14 13 12 17 17 N 1.31621 * 119.99984 * 343.17890 * 16 14 13 18 18 Si 1.86800 * 120.00122 * 163.17569 * 16 14 13 19 19 H 1.48504 * 109.46788 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47041 * 119.99977 * 18 16 14 21 21 H 1.48497 * 109.47258 * 240.00106 * 18 16 14 22 22 C 1.46924 * 118.73707 * 306.39604 * 13 12 11 23 23 H 1.09000 * 109.47208 * 60.00243 * 1 2 3 24 24 H 1.09000 * 109.47574 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47576 * 300.00410 * 1 2 3 26 26 H 1.08996 * 109.47063 * 239.99851 * 2 1 3 27 27 H 1.08998 * 109.46705 * 119.99884 * 2 1 3 28 28 H 1.09003 * 109.47600 * 59.99775 * 3 2 1 29 29 H 1.08998 * 109.47246 * 299.99552 * 3 2 1 30 30 H 0.96998 * 120.00407 * 0.02562 * 6 4 3 31 31 H 1.09005 * 109.47466 * 60.00524 * 7 6 4 32 32 H 1.09000 * 109.47540 * 299.99680 * 7 6 4 33 33 H 1.09002 * 109.47451 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.47561 * 300.06207 * 9 8 7 35 35 H 1.09001 * 109.47535 * 60.06638 * 9 8 7 36 36 H 1.09007 * 109.45781 * 61.33176 * 10 8 7 37 37 H 1.08998 * 109.45026 * 301.36882 * 10 8 7 38 38 H 1.09004 * 109.50047 * 178.68356 * 11 10 8 39 39 H 1.09007 * 109.49677 * 58.58847 * 11 10 8 40 40 H 1.09005 * 109.58673 * 294.84815 * 12 11 10 41 41 H 1.08998 * 109.59045 * 174.42087 * 12 11 10 42 42 H 0.97002 * 120.00123 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.58661 * 173.39307 * 22 13 12 44 44 H 1.09004 * 109.58394 * 293.81592 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 5.6859 2.6095 0.0003 8 6 6.1959 4.0520 -0.0009 9 6 5.6849 4.7753 1.2468 10 6 7.7263 4.0527 -0.0002 11 6 8.2375 5.4948 0.0327 12 6 7.7542 6.2324 -1.2200 13 7 6.2923 6.1121 -1.3052 14 6 5.5064 7.2271 -1.4242 15 1 5.8420 8.1702 -1.0188 16 6 4.2782 7.1452 -2.0660 17 7 4.0072 6.1152 -2.8392 18 14 3.0102 8.4968 -1.8321 19 1 3.5561 9.5355 -0.9220 20 1 2.6914 9.1093 -3.1468 21 1 1.7754 7.9204 -1.2421 22 6 5.6895 4.7732 -1.2539 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.7359 3.4497 -0.0001 31 1 6.0493 2.0954 -0.8896 32 1 6.0492 2.0961 0.8905 33 1 6.0481 5.8030 1.2454 34 1 4.5949 4.7746 1.2464 35 1 6.0482 4.2635 2.1379 36 1 8.0901 3.5590 -0.9014 37 1 8.0891 3.5188 0.8780 38 1 9.3273 5.4941 0.0567 39 1 7.8539 5.9967 0.9210 40 1 8.2096 5.7872 -2.1047 41 1 8.0311 7.2846 -1.1542 42 1 3.1491 6.0581 -3.2880 43 1 4.6040 4.8627 -1.2104 44 1 5.9765 4.2091 -2.1413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278641635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:45 Heat of formation + Delta-G solvation = -61.142303 kcal Electronic energy + Delta-G solvation = -21835.857465 eV Core-core repulsion = 18786.909640 eV Total energy + Delta-G solvation = -3048.947825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.03255 -39.80000 -36.36104 -35.23623 -34.87160 -32.96043 -31.63029 -29.22797 -27.91966 -27.23042 -26.47248 -23.93395 -22.85923 -21.95427 -21.17687 -19.56248 -18.51396 -18.00351 -17.03836 -16.87662 -16.62149 -15.82636 -15.59852 -15.36628 -15.01791 -14.91081 -14.73632 -14.34355 -13.93738 -13.81384 -13.76344 -13.17014 -13.00036 -12.84049 -12.70137 -12.65755 -12.58397 -12.26591 -12.10729 -12.02818 -11.84046 -11.71883 -11.62904 -11.40550 -11.23226 -10.96563 -10.78265 -10.50925 -10.00327 -8.60810 -7.82723 -5.28079 1.47178 1.51335 1.60137 1.68389 2.33631 2.53971 3.29943 3.61973 3.83669 3.96421 4.01465 4.04660 4.06802 4.12253 4.36672 4.50611 4.56376 4.59012 4.68808 4.75667 4.75821 4.76060 4.81750 4.93324 5.00315 5.05069 5.12029 5.17773 5.20932 5.27935 5.30828 5.34383 5.41547 5.45372 5.48986 5.56780 5.64545 5.73735 5.79203 6.43470 6.58499 7.19657 7.26873 7.90211 8.43318 9.22892 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.006494 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.665866 B = 4310.601786 C = 5797.233127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.138 4.138 4 C 0.505 3.495 5 O -0.590 6.590 6 N -0.718 5.718 7 C 0.142 3.858 8 C -0.091 4.091 9 C -0.118 4.118 10 C -0.095 4.095 11 C -0.123 4.123 12 C 0.136 3.864 13 N -0.605 5.605 14 C -0.256 4.256 15 H 0.063 0.937 16 C -0.043 4.043 17 N -0.931 5.931 18 Si 0.958 3.042 19 H -0.270 1.270 20 H -0.299 1.299 21 H -0.285 1.285 22 C 0.197 3.803 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.407 0.593 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.006 0.994 41 H 0.051 0.949 42 H 0.249 0.751 43 H 0.067 0.933 44 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.759 -6.509 8.893 11.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.178 4.178 4 C 0.293 3.707 5 O -0.472 6.472 6 N -0.370 5.370 7 C 0.017 3.983 8 C -0.093 4.093 9 C -0.175 4.175 10 C -0.133 4.133 11 C -0.162 4.162 12 C 0.010 3.990 13 N -0.328 5.328 14 C -0.386 4.386 15 H 0.081 0.919 16 C -0.239 4.239 17 N -0.578 5.578 18 Si 0.787 3.213 19 H -0.195 1.195 20 H -0.226 1.226 21 H -0.211 1.211 22 C 0.071 3.929 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.133 0.867 29 H 0.119 0.881 30 H 0.244 0.756 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.085 0.915 44 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -1.444 -7.229 8.800 11.480 hybrid contribution -0.757 1.090 -0.670 1.486 sum -2.201 -6.139 8.130 10.423 Atomic orbital electron populations 1.21762 0.93618 1.02530 1.02560 1.21228 0.96745 0.94184 1.02160 1.21783 0.89338 1.00707 1.05932 1.21363 0.91736 0.82899 0.74656 1.90633 1.71735 1.32564 1.52221 1.46180 1.07698 1.09066 1.74021 1.21238 0.79840 0.96414 1.00782 1.21347 0.96904 0.93037 0.98054 1.21631 0.99861 1.00511 0.95509 1.21378 0.93134 0.97221 1.01602 1.21923 1.00183 0.95522 0.98566 1.21104 0.84248 0.98302 0.95303 1.44235 1.00916 1.02599 1.85009 1.19474 0.99775 0.90249 1.29099 0.91906 1.25662 1.01687 0.99707 0.96833 1.70196 1.23007 1.32838 1.31738 0.85351 0.79601 0.79447 0.76905 1.19471 1.22621 1.21108 1.20549 0.97947 0.83599 0.90758 0.92301 0.91753 0.91599 0.93034 0.92189 0.86740 0.88070 0.75628 0.93786 0.91156 0.92575 0.93923 0.91954 0.93233 0.90408 0.90257 0.91649 0.97595 0.92999 0.94164 0.91479 1.00290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.91 71.98 0.71 -1.77 16 2 C -0.11 -2.38 5.22 30.59 0.16 -2.22 16 3 C -0.14 -3.27 5.70 29.85 0.17 -3.09 16 4 C 0.51 16.13 7.83 87.66 0.69 16.82 16 5 O -0.59 -22.81 15.98 -3.05 -0.05 -22.86 16 6 N -0.72 -23.05 5.00 -463.04 -2.31 -25.36 16 7 C 0.14 4.70 4.57 86.38 0.39 5.09 16 8 C -0.09 -3.14 0.53 -52.10 -0.03 -3.17 16 9 C -0.12 -3.76 7.81 71.98 0.56 -3.20 16 10 C -0.10 -2.92 4.71 30.62 0.14 -2.78 16 11 C -0.12 -3.83 5.74 30.67 0.18 -3.66 16 12 C 0.14 5.46 6.52 86.36 0.56 6.02 16 13 N -0.60 -28.83 2.43 -699.09 -1.70 -30.53 16 14 C -0.26 -13.38 9.58 84.03 0.81 -12.58 16 15 H 0.06 3.25 7.88 -2.91 -0.02 3.23 16 16 C -0.04 -2.30 4.92 84.86 0.42 -1.88 16 17 N -0.93 -52.36 11.20 21.65 0.24 -52.12 16 18 Si 0.96 42.74 29.59 68.60 2.03 44.77 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 C 0.20 8.90 3.73 86.36 0.32 9.22 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 27 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 28 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.41 12.91 6.22 -92.71 -0.58 12.33 16 31 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 1.98 5.97 -2.39 -0.01 1.97 16 34 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 2.03 6.33 -2.38 -0.02 2.02 16 40 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 41 H 0.05 2.04 7.93 -2.39 -0.02 2.03 16 42 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 43 H 0.07 3.30 4.97 -2.39 -0.01 3.28 16 44 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 Total: -1.00 -63.43 338.82 3.68 -59.75 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.38 Total: 23.54 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.09 Total: 2.81 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -3.77 Total: -108.01 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -63.43 3.68 -59.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278641635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.393 kcal (2) G-P(sol) polarization free energy of solvation -63.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds