Wall clock time and date at job start Mon Mar 30 2020 19:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47073 * 2 1 4 4 N 1.46500 * 109.46938 * 180.02562 * 3 2 1 5 5 C 1.36939 * 120.00053 * 274.06547 * 4 3 2 6 6 H 1.08003 * 119.99931 * 35.89848 * 5 4 3 7 7 C 1.38816 * 120.00121 * 215.89607 * 5 4 3 8 8 N 1.31612 * 119.99686 * 24.25823 * 7 5 4 9 9 Si 1.86799 * 119.99657 * 204.25356 * 7 5 4 10 10 H 1.48498 * 109.46997 * 90.00626 * 9 7 5 11 11 H 1.48504 * 109.46633 * 209.99849 * 9 7 5 12 12 H 1.48494 * 109.47314 * 330.00127 * 9 7 5 13 13 C 1.46507 * 120.00152 * 94.07417 * 4 3 2 14 14 C 1.53000 * 109.46758 * 269.99677 * 13 4 3 15 15 N 1.46497 * 109.47283 * 180.02562 * 14 13 4 16 16 C 1.34778 * 120.00302 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99832 * 359.97438 * 16 15 14 18 18 C 1.50695 * 120.00086 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47301 * 180.77962 * 18 16 15 20 20 C 1.52998 * 115.55086 * 276.47397 * 19 18 16 21 21 C 1.52997 * 117.50130 * 130.76328 * 19 18 16 22 22 C 1.52995 * 117.49659 * 62.14084 * 19 18 16 23 23 H 1.08999 * 109.46951 * 60.00187 * 1 2 3 24 24 H 1.09008 * 109.46984 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47185 * 300.00183 * 1 2 3 26 26 H 1.09005 * 109.47487 * 240.00052 * 2 1 3 27 27 H 1.09006 * 109.47609 * 119.99902 * 2 1 3 28 28 H 1.08998 * 109.47265 * 59.99865 * 3 2 1 29 29 H 1.08999 * 109.47079 * 299.99734 * 3 2 1 30 30 H 0.97005 * 119.99654 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47112 * 149.99964 * 13 4 3 32 32 H 1.08995 * 109.46937 * 29.99419 * 13 4 3 33 33 H 1.08997 * 109.47269 * 59.99820 * 14 13 4 34 34 H 1.09005 * 109.46970 * 300.00071 * 14 13 4 35 35 H 0.97004 * 119.99884 * 359.97438 * 15 14 13 36 36 H 1.08995 * 109.47462 * 300.78033 * 18 16 15 37 37 H 1.09008 * 109.47013 * 60.78182 * 18 16 15 38 38 H 1.09004 * 109.47078 * 63.59803 * 20 19 18 39 39 H 1.09003 * 109.47485 * 183.59362 * 20 19 18 40 40 H 1.09000 * 109.47124 * 303.59634 * 20 19 18 41 41 H 1.08999 * 117.49675 * 0.02562 * 21 19 18 42 42 H 1.09001 * 117.50293 * 145.02016 * 21 19 18 43 43 H 1.09003 * 117.50341 * 214.97862 * 22 19 18 44 44 H 1.08998 * 117.50221 * 0.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3582 1.1820 6 1 3.8043 0.7510 1.9876 7 6 5.3807 2.0532 1.3455 8 7 5.6215 3.1254 0.6213 9 14 6.6408 1.4664 2.5934 10 1 7.5752 0.5132 1.9425 11 1 7.4030 2.6306 3.1120 12 1 5.9460 0.7890 3.7175 13 6 4.2370 1.5328 -1.2665 14 6 4.4918 0.1254 -1.8097 15 7 5.2243 0.2155 -3.0752 16 6 5.5606 -0.9072 -3.7407 17 8 5.2572 -1.9922 -3.2916 18 6 6.3136 -0.8144 -5.0427 19 6 6.5510 -2.2209 -5.5960 20 6 7.7673 -2.9563 -5.0298 21 6 6.1914 -2.4736 -7.0615 22 6 5.3200 -3.0585 -5.9481 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 6.4532 3.6113 0.7358 31 1 5.1895 2.0360 -1.1003 32 1 3.6476 2.0993 -1.9874 33 1 3.5393 -0.3779 -1.9759 34 1 5.0812 -0.4412 -1.0887 35 1 5.4666 1.0833 -3.4345 36 1 5.7307 -0.2357 -5.7592 37 1 7.2723 -0.3238 -4.8738 38 1 7.6268 -3.1221 -3.9616 39 1 7.8795 -3.9157 -5.5347 40 1 8.6623 -2.3548 -5.1894 41 1 5.7861 -1.6377 -7.6316 42 1 6.8215 -3.1637 -7.6226 43 1 5.3768 -4.1335 -5.7768 44 1 4.3411 -2.6074 -5.7861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317543262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:39:23 Heat of formation + Delta-G solvation = -13.318787 kcal Electronic energy + Delta-G solvation = -20982.581851 eV Core-core repulsion = 17935.707809 eV Total energy + Delta-G solvation = -3046.874042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.63290 -37.52350 -36.38140 -34.10403 -32.87694 -30.91817 -29.90263 -28.46277 -27.24968 -25.56923 -23.40271 -22.41176 -21.08938 -20.47991 -20.05553 -18.87451 -16.95144 -16.24900 -15.75709 -15.41106 -14.94226 -14.71142 -14.39999 -14.00435 -13.85988 -13.46346 -13.02848 -12.89412 -12.77116 -12.61809 -12.28396 -11.88981 -11.57972 -11.50556 -11.47876 -11.23458 -11.13287 -10.94693 -10.75284 -10.41259 -10.35861 -10.25813 -10.06747 -9.87211 -9.79771 -9.70980 -9.24649 -8.53848 -8.39431 -6.65823 -5.85430 -3.40138 3.06727 3.35031 3.43076 3.45079 3.48511 3.99492 4.46698 4.62006 4.77298 4.90911 4.99982 5.24171 5.30888 5.47735 5.50172 5.56695 5.60745 5.66655 5.76354 5.83336 5.88832 5.98495 6.02195 6.05227 6.13392 6.16164 6.25474 6.28157 6.30097 6.42683 6.54746 6.62443 6.66719 6.94702 6.97303 7.04337 7.18270 7.53242 7.79957 8.01435 8.45441 8.69693 9.13197 9.76297 10.33432 11.14955 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.004969 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.682112 B = 5633.340606 C = 6791.083198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.262 4.262 6 H 0.063 0.937 7 C 0.014 3.986 8 N -0.885 5.885 9 Si 0.894 3.106 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.138 3.862 14 C 0.099 3.901 15 N -0.725 5.725 16 C 0.505 3.495 17 O -0.540 6.540 18 C -0.107 4.107 19 C -0.109 4.109 20 C -0.112 4.112 21 C -0.182 4.182 22 C -0.151 4.151 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.033 0.967 30 H 0.255 0.745 31 H 0.097 0.903 32 H 0.028 0.972 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.396 0.604 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.051 -5.865 -12.910 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.022 3.978 4 N -0.300 5.300 5 C -0.391 4.391 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.527 5.527 9 Si 0.723 3.277 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.010 3.990 14 C -0.027 4.027 15 N -0.376 5.376 16 C 0.290 3.710 17 O -0.417 6.417 18 C -0.147 4.147 19 C -0.109 4.109 20 C -0.169 4.169 21 C -0.219 4.219 22 C -0.189 4.189 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.229 0.771 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.158 -6.489 -12.522 14.104 hybrid contribution 0.832 0.120 0.445 0.951 sum 0.675 -6.369 -12.077 13.670 Atomic orbital electron populations 1.21721 0.97338 1.00397 1.00983 1.22197 0.93803 1.00947 1.01588 1.20929 0.85045 0.92968 0.98906 1.43633 0.99455 1.84970 1.01932 1.19039 1.04393 1.22671 0.93003 0.91976 1.25102 1.00769 0.94544 0.98220 1.70044 1.24770 1.14978 1.42950 0.86427 0.81870 0.78064 0.81308 1.21254 1.21734 1.20134 1.21046 1.00182 0.91331 0.86434 1.22393 0.94820 1.02488 0.82960 1.46175 1.58246 1.08386 1.24790 1.20552 0.79848 0.84525 0.86036 1.90673 1.54644 1.27572 1.68812 1.21237 1.01505 0.96559 0.95393 1.21017 0.98014 0.95384 0.96529 1.21289 0.95091 0.98882 1.01668 1.23181 1.04241 1.03571 0.90950 1.22830 0.95239 0.99467 1.01315 0.93480 0.93813 0.93207 0.92928 0.92367 0.93525 0.94840 0.93545 0.88533 0.95383 0.93146 0.91956 0.77122 0.89203 0.88681 0.91529 0.92731 0.92555 0.89042 0.88984 0.89019 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.15 -2.69 6.24 -26.73 -0.17 -2.85 16 3 C 0.15 3.08 5.72 -4.04 -0.02 3.06 16 4 N -0.58 -14.04 2.44 -173.23 -0.42 -14.46 16 5 C -0.26 -7.02 9.45 -15.06 -0.14 -7.16 16 6 H 0.06 1.69 7.94 -52.48 -0.42 1.27 16 7 C 0.01 0.38 4.89 -17.43 -0.09 0.30 16 8 N -0.89 -24.64 11.54 55.49 0.64 -24.00 16 9 Si 0.89 21.43 29.62 -169.99 -5.03 16.40 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.14 3.05 5.46 -4.04 -0.02 3.03 16 14 C 0.10 2.01 6.00 -4.04 -0.02 1.99 16 15 N -0.72 -12.07 5.56 -60.30 -0.33 -12.41 16 16 C 0.51 8.30 7.71 -10.99 -0.08 8.22 16 17 O -0.54 -10.88 15.20 5.55 0.08 -10.80 16 18 C -0.11 -1.28 5.68 -27.89 -0.16 -1.44 16 19 C -0.11 -1.30 1.65 -154.51 -0.26 -1.56 16 20 C -0.11 -1.30 9.70 37.16 0.36 -0.94 16 21 C -0.18 -1.80 9.87 -26.73 -0.26 -2.06 16 22 C -0.15 -1.85 8.84 -26.74 -0.24 -2.09 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 1.00 6.55 -51.93 -0.34 0.66 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 1.00 8.07 -51.93 -0.42 0.58 16 29 H 0.03 0.65 7.84 -51.93 -0.41 0.25 16 30 H 0.25 6.84 8.31 -40.82 -0.34 6.51 16 31 H 0.10 2.40 5.51 -51.93 -0.29 2.12 16 32 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 33 H 0.05 1.06 6.55 -51.93 -0.34 0.72 16 34 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.40 5.54 8.47 -40.82 -0.35 5.19 16 36 H 0.09 0.89 7.91 -51.93 -0.41 0.48 16 37 H 0.09 1.00 8.11 -51.92 -0.42 0.57 16 38 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 39 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.80 8.06 -51.93 -0.42 0.39 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -30.08 357.46 -8.41 -38.49 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.99 Total: 4.74 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -0.73 Total: -3.34 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.12 Total: -50.88 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.08 -8.41 -38.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317543262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.171 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds