Wall clock time and date at job start Mon Mar 30 2020 19:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47073 * 2 1 4 4 N 1.46500 * 109.46938 * 180.02562 * 3 2 1 5 5 C 1.36939 * 120.00053 * 274.06547 * 4 3 2 6 6 H 1.08003 * 119.99931 * 35.89848 * 5 4 3 7 7 C 1.38816 * 120.00121 * 215.89607 * 5 4 3 8 8 N 1.31612 * 119.99686 * 24.25823 * 7 5 4 9 9 Si 1.86799 * 119.99657 * 204.25356 * 7 5 4 10 10 H 1.48498 * 109.46997 * 90.00626 * 9 7 5 11 11 H 1.48504 * 109.46633 * 209.99849 * 9 7 5 12 12 H 1.48494 * 109.47314 * 330.00127 * 9 7 5 13 13 C 1.46507 * 120.00152 * 94.07417 * 4 3 2 14 14 C 1.53000 * 109.46758 * 269.99677 * 13 4 3 15 15 N 1.46497 * 109.47283 * 180.02562 * 14 13 4 16 16 C 1.34778 * 120.00302 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99832 * 359.97438 * 16 15 14 18 18 C 1.50695 * 120.00086 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47301 * 180.77962 * 18 16 15 20 20 C 1.52998 * 115.55086 * 276.47397 * 19 18 16 21 21 C 1.52997 * 117.50130 * 130.76328 * 19 18 16 22 22 C 1.52995 * 117.49659 * 62.14084 * 19 18 16 23 23 H 1.08999 * 109.46951 * 60.00187 * 1 2 3 24 24 H 1.09008 * 109.46984 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47185 * 300.00183 * 1 2 3 26 26 H 1.09005 * 109.47487 * 240.00052 * 2 1 3 27 27 H 1.09006 * 109.47609 * 119.99902 * 2 1 3 28 28 H 1.08998 * 109.47265 * 59.99865 * 3 2 1 29 29 H 1.08999 * 109.47079 * 299.99734 * 3 2 1 30 30 H 0.97005 * 119.99654 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47112 * 149.99964 * 13 4 3 32 32 H 1.08995 * 109.46937 * 29.99419 * 13 4 3 33 33 H 1.08997 * 109.47269 * 59.99820 * 14 13 4 34 34 H 1.09005 * 109.46970 * 300.00071 * 14 13 4 35 35 H 0.97004 * 119.99884 * 359.97438 * 15 14 13 36 36 H 1.08995 * 109.47462 * 300.78033 * 18 16 15 37 37 H 1.09008 * 109.47013 * 60.78182 * 18 16 15 38 38 H 1.09004 * 109.47078 * 63.59803 * 20 19 18 39 39 H 1.09003 * 109.47485 * 183.59362 * 20 19 18 40 40 H 1.09000 * 109.47124 * 303.59634 * 20 19 18 41 41 H 1.08999 * 117.49675 * 0.02562 * 21 19 18 42 42 H 1.09001 * 117.50293 * 145.02016 * 21 19 18 43 43 H 1.09003 * 117.50341 * 214.97862 * 22 19 18 44 44 H 1.08998 * 117.50221 * 0.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3582 1.1820 6 1 3.8043 0.7510 1.9876 7 6 5.3807 2.0532 1.3455 8 7 5.6215 3.1254 0.6213 9 14 6.6408 1.4664 2.5934 10 1 7.5752 0.5132 1.9425 11 1 7.4030 2.6306 3.1120 12 1 5.9460 0.7890 3.7175 13 6 4.2370 1.5328 -1.2665 14 6 4.4918 0.1254 -1.8097 15 7 5.2243 0.2155 -3.0752 16 6 5.5606 -0.9072 -3.7407 17 8 5.2572 -1.9922 -3.2916 18 6 6.3136 -0.8144 -5.0427 19 6 6.5510 -2.2209 -5.5960 20 6 7.7673 -2.9563 -5.0298 21 6 6.1914 -2.4736 -7.0615 22 6 5.3200 -3.0585 -5.9481 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 6.4532 3.6113 0.7358 31 1 5.1895 2.0360 -1.1003 32 1 3.6476 2.0993 -1.9874 33 1 3.5393 -0.3779 -1.9759 34 1 5.0812 -0.4412 -1.0887 35 1 5.4666 1.0833 -3.4345 36 1 5.7307 -0.2357 -5.7592 37 1 7.2723 -0.3238 -4.8738 38 1 7.6268 -3.1221 -3.9616 39 1 7.8795 -3.9157 -5.5347 40 1 8.6623 -2.3548 -5.1894 41 1 5.7861 -1.6377 -7.6316 42 1 6.8215 -3.1637 -7.6226 43 1 5.3768 -4.1335 -5.7768 44 1 4.3411 -2.6074 -5.7861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317543262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:39:22 Heat of formation + Delta-G solvation = -30.615764 kcal Electronic energy + Delta-G solvation = -20983.331904 eV Core-core repulsion = 17935.707809 eV Total energy + Delta-G solvation = -3047.624095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.89443 -38.69884 -38.03024 -35.62256 -34.62033 -32.68748 -31.14478 -29.60547 -28.55191 -27.35953 -25.08181 -23.27302 -22.69376 -22.01421 -21.59755 -19.91033 -18.73108 -17.71193 -17.04668 -16.94829 -16.52979 -16.06887 -15.96018 -15.52035 -15.09757 -14.82616 -14.65510 -14.33191 -14.29028 -13.74335 -13.38918 -13.24657 -13.08785 -12.93964 -12.86570 -12.64197 -12.53962 -12.33235 -12.22731 -12.10462 -12.01080 -11.88841 -11.67814 -11.35270 -11.20750 -10.82300 -10.54009 -10.43737 -9.95536 -8.63600 -7.88702 -5.47357 1.41827 1.46381 1.52977 1.76028 2.22977 2.49377 2.98470 3.19207 3.71255 3.73360 3.88527 3.97134 4.11687 4.18718 4.26241 4.34292 4.38214 4.54996 4.62095 4.67101 4.69920 4.72722 4.83154 4.84556 4.96541 4.97508 5.00583 5.08632 5.14098 5.18069 5.22640 5.25589 5.30230 5.38030 5.41737 5.48268 5.61213 5.65601 5.73115 6.41976 6.70176 7.12530 7.38728 7.81555 8.33062 9.07635 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.004969 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.682112 B = 5633.340606 C = 6791.083198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.598 5.598 5 C -0.272 4.272 6 H 0.051 0.949 7 C -0.025 4.025 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.291 1.291 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.145 3.855 14 C 0.122 3.878 15 N -0.720 5.720 16 C 0.501 3.499 17 O -0.581 6.581 18 C -0.098 4.098 19 C -0.128 4.128 20 C -0.111 4.111 21 C -0.149 4.149 22 C -0.174 4.174 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.254 0.746 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.024 0.976 35 H 0.411 0.589 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -5.728 -14.822 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.402 4.402 6 H 0.069 0.931 7 C -0.224 4.224 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.218 1.218 11 H -0.214 1.214 12 H -0.197 1.197 13 C 0.018 3.982 14 C -0.004 4.004 15 N -0.372 5.372 16 C 0.289 3.711 17 O -0.461 6.461 18 C -0.137 4.137 19 C -0.128 4.128 20 C -0.168 4.168 21 C -0.185 4.185 22 C -0.211 4.211 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.247 0.753 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.104 0.896 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.081 -6.338 -14.457 15.786 hybrid contribution 0.763 0.051 1.021 1.276 sum 0.681 -6.287 -13.436 14.850 Atomic orbital electron populations 1.21652 0.94166 1.01778 1.02046 1.22022 0.96488 0.98792 1.00156 1.21042 0.83326 0.94490 0.99099 1.43873 1.00904 1.85234 1.01834 1.19160 1.05093 1.22217 0.93776 0.93129 1.25649 1.01982 0.94710 1.00028 1.70119 1.25038 1.15685 1.44262 0.85595 0.79789 0.77440 0.79636 1.21768 1.21364 1.19699 1.20917 0.99081 0.91991 0.86179 1.21822 0.94187 1.00597 0.83842 1.46053 1.57973 1.09658 1.23528 1.21444 0.79120 0.83439 0.87119 1.90659 1.56223 1.29121 1.70130 1.21284 1.02065 0.97444 0.92928 1.21152 0.97756 0.95229 0.98663 1.21274 0.95854 0.99951 0.99719 1.23254 1.02156 1.03532 0.89599 1.22801 0.94930 0.99231 1.04108 0.92029 0.92303 0.92535 0.93746 0.94412 0.94526 0.93281 0.93636 0.90943 0.93721 0.93744 0.95797 0.75312 0.86350 0.86598 0.94682 0.91615 0.90910 0.87240 0.87345 0.89628 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.17 16 2 C -0.13 -4.95 6.24 30.59 0.19 -4.75 16 3 C 0.15 6.05 5.72 86.38 0.49 6.55 16 4 N -0.60 -29.34 2.44 -701.98 -1.71 -31.05 16 5 C -0.27 -14.91 9.45 84.03 0.79 -14.11 16 6 H 0.05 2.83 7.94 -2.91 -0.02 2.81 16 7 C -0.03 -1.38 4.89 84.86 0.42 -0.97 16 8 N -0.91 -51.00 11.54 21.65 0.25 -50.75 16 9 Si 0.95 44.64 29.62 68.60 2.03 46.67 16 10 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 C 0.15 6.50 5.46 86.38 0.47 6.97 16 14 C 0.12 5.08 6.00 86.38 0.52 5.60 16 15 N -0.72 -23.64 5.56 -463.07 -2.57 -26.22 16 16 C 0.50 16.19 7.71 87.66 0.68 16.87 16 17 O -0.58 -23.91 15.20 -3.04 -0.05 -23.96 16 18 C -0.10 -2.10 5.68 29.85 0.17 -1.93 16 19 C -0.13 -2.80 1.65 -52.18 -0.09 -2.88 16 20 C -0.11 -2.44 9.70 71.98 0.70 -1.74 16 21 C -0.15 -2.44 9.87 30.59 0.30 -2.14 16 22 C -0.17 -4.06 8.84 30.59 0.27 -3.79 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.04 1.69 6.55 -2.38 -0.02 1.67 16 27 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.04 1.57 8.07 -2.39 -0.02 1.55 16 29 H 0.05 1.87 7.84 -2.39 -0.02 1.85 16 30 H 0.25 13.76 8.31 -92.70 -0.77 12.99 16 31 H 0.07 3.66 5.51 -2.39 -0.01 3.64 16 32 H 0.04 1.82 7.86 -2.39 -0.02 1.80 16 33 H 0.04 1.89 6.55 -2.39 -0.02 1.88 16 34 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.41 10.95 8.47 -92.71 -0.79 10.17 16 36 H 0.12 1.90 7.91 -2.39 -0.02 1.89 16 37 H 0.12 2.06 8.11 -2.38 -0.02 2.04 16 38 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 39 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.11 1.44 8.06 -2.39 -0.02 1.42 16 42 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -66.36 357.46 3.75 -62.62 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.17 Total: 22.21 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 5.63 Total: 0.49 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -4.04 Total: -108.02 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -66.36 3.75 -62.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317543262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.004 kcal (2) G-P(sol) polarization free energy of solvation -66.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds