Wall clock time and date at job start Mon Mar 30 2020 19:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46846 * 2 1 4 4 O 1.21281 * 120.00149 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99896 * 179.97438 * 3 2 1 6 6 C 1.46503 * 119.99914 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.46913 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47269 * 300.00349 * 6 5 3 9 9 N 1.46505 * 109.47212 * 304.99931 * 8 6 5 10 10 C 1.36936 * 119.99992 * 179.97438 * 9 8 6 11 11 H 1.08006 * 119.99834 * 0.02562 * 10 9 8 12 12 C 1.38801 * 120.00093 * 180.02562 * 10 9 8 13 13 N 1.31619 * 120.00176 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00265 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46725 * 59.99976 * 14 12 10 16 16 H 1.48498 * 109.47172 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46920 * 300.00189 * 14 12 10 18 18 C 1.52997 * 109.46834 * 60.00731 * 6 5 3 19 19 C 1.53000 * 109.46704 * 179.97438 * 18 6 5 20 20 C 1.53005 * 109.47029 * 179.97438 * 19 18 6 21 21 C 1.53001 * 109.46939 * 59.99699 * 20 19 18 22 22 C 1.52991 * 109.47684 * 300.00395 * 21 20 19 23 23 C 1.52997 * 109.47504 * 59.99762 * 18 6 5 24 24 H 1.09004 * 109.46741 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46917 * 299.99256 * 1 2 3 26 26 H 1.09000 * 109.47403 * 59.99798 * 1 2 3 27 27 H 1.09001 * 109.46917 * 240.00744 * 2 1 3 28 28 H 1.09000 * 109.47403 * 120.00202 * 2 1 3 29 29 H 0.97005 * 120.00302 * 0.02562 * 5 3 2 30 30 H 1.09002 * 109.47153 * 184.99923 * 8 6 5 31 31 H 1.09001 * 109.46832 * 65.00114 * 8 6 5 32 32 H 0.96996 * 119.99606 * 0.02562 * 9 8 6 33 33 H 0.97001 * 120.00803 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.47016 * 299.99503 * 18 6 5 35 35 H 1.08993 * 109.47376 * 299.99617 * 19 18 6 36 36 H 1.08992 * 109.47261 * 60.00195 * 19 18 6 37 37 H 1.09002 * 109.47110 * 299.99981 * 20 19 18 38 38 H 1.08994 * 109.47689 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.47255 * 179.97438 * 21 20 19 40 40 H 1.09006 * 109.46733 * 60.00638 * 21 20 19 41 41 H 1.09006 * 109.47233 * 299.99936 * 22 21 20 42 42 H 1.09004 * 109.47763 * 179.97438 * 22 21 20 43 43 H 1.09004 * 109.47346 * 300.00076 * 23 18 6 44 44 H 1.09002 * 109.47196 * 59.99850 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8456 3.0484 0.0011 7 1 4.9357 3.0484 0.0010 8 6 3.3360 3.7701 -1.2480 9 7 3.7239 3.0139 -2.4414 10 6 3.3748 3.4699 -3.6844 11 1 2.8137 4.3873 -3.7852 12 6 3.7418 2.7532 -4.8150 13 7 4.4251 1.6350 -4.6923 14 14 3.2661 3.3756 -6.5108 15 1 3.8597 4.7192 -6.7294 16 1 3.7740 2.4368 -7.5432 17 1 1.7871 3.4661 -6.6080 18 6 3.3353 3.7692 1.2505 19 6 3.8458 5.2115 1.2513 20 6 3.3349 5.9325 2.5004 21 6 3.8436 5.2106 3.7498 22 6 3.3333 3.7683 3.7489 23 6 3.8450 3.0475 2.4996 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.9878 0.9299 0.0005 30 1 3.7706 4.7687 -1.2935 31 1 2.2497 3.8482 -1.2046 32 1 4.2275 2.1898 -2.3508 33 1 4.6814 1.1338 -5.4823 34 1 2.2453 3.7691 1.2501 35 1 4.9357 5.2112 1.2519 36 1 3.4830 5.7258 0.3615 37 1 2.2449 5.9329 2.4995 38 1 3.6982 6.9601 2.5009 39 1 3.4801 5.7245 4.6397 40 1 4.9337 5.2103 3.7508 41 1 2.2432 3.7686 3.7480 42 1 3.6960 3.2539 4.6388 43 1 3.4817 2.0198 2.4992 44 1 4.9350 3.0475 2.4999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482401708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:46 Heat of formation + Delta-G solvation = -59.223260 kcal Electronic energy + Delta-G solvation = -21907.613788 eV Core-core repulsion = 18858.749179 eV Total energy + Delta-G solvation = -3048.864609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -39.94428 -38.05542 -35.40374 -33.51840 -32.57955 -31.26856 -30.54941 -30.38937 -26.93645 -24.51466 -23.39947 -22.54422 -21.62560 -20.87185 -19.77361 -18.95460 -17.04062 -16.99405 -15.72096 -15.27340 -14.95180 -14.49316 -14.17868 -14.01089 -13.78313 -13.57021 -13.16776 -13.11701 -12.66806 -12.27976 -12.23441 -11.93887 -11.75769 -11.62360 -11.49825 -11.20704 -11.02113 -10.89365 -10.82066 -10.75433 -10.67792 -10.36328 -10.13502 -9.98888 -9.79358 -9.63150 -9.11478 -8.69717 -8.40594 -6.79370 -5.69864 -2.95751 3.20963 3.48731 3.52346 3.54098 3.70355 4.63794 4.77059 4.86760 4.87058 5.08613 5.25960 5.32138 5.35083 5.42698 5.51276 5.61233 5.62620 5.64311 5.65965 5.73897 5.77976 5.87270 5.99388 5.99858 6.08034 6.11185 6.19995 6.20459 6.24304 6.33055 6.36877 6.44258 6.47202 6.56983 6.65994 6.75271 7.00203 7.23224 7.77436 8.05046 8.50187 8.80728 9.61143 10.20534 10.56061 11.53486 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.005836 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.668255 B = 4796.928704 C = 5872.186206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C 0.521 3.479 4 O -0.536 6.536 5 N -0.718 5.718 6 C 0.149 3.851 7 H 0.079 0.921 8 C 0.135 3.865 9 N -0.728 5.728 10 C -0.229 4.229 11 H 0.067 0.933 12 C -0.017 4.017 13 N -0.938 5.938 14 Si 0.905 3.095 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.287 1.287 18 C -0.100 4.100 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.108 4.108 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.396 0.604 30 H 0.023 0.977 31 H 0.044 0.956 32 H 0.381 0.619 33 H 0.253 0.747 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 -0.233 17.447 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.186 4.186 3 C 0.307 3.693 4 O -0.413 6.413 5 N -0.368 5.368 6 C 0.044 3.956 7 H 0.097 0.903 8 C 0.007 3.993 9 N -0.371 5.371 10 C -0.360 4.360 11 H 0.085 0.915 12 C -0.212 4.212 13 N -0.588 5.588 14 Si 0.737 3.263 15 H -0.214 1.214 16 H -0.218 1.218 17 H -0.214 1.214 18 C -0.119 4.119 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.145 4.145 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.229 0.771 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.214 0.786 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.757 0.542 17.306 17.403 hybrid contribution 0.382 -0.396 -1.098 1.228 sum -1.375 0.146 16.208 16.267 Atomic orbital electron populations 1.21480 0.93492 1.00922 1.03186 1.21623 0.98377 0.94823 1.03819 1.20469 0.82274 0.91294 0.75218 1.90611 1.55409 1.46178 1.49074 1.45805 1.06981 1.08443 1.75541 1.21245 0.97828 0.81347 0.95180 0.90263 1.21150 0.98965 0.93702 0.85495 1.42213 1.66704 1.27671 1.00553 1.19196 1.27951 1.05086 0.83797 0.91474 1.24669 1.01395 0.97510 0.97620 1.69636 1.44097 1.16725 1.28317 0.86285 0.78016 0.77644 0.84399 1.21386 1.21772 1.21393 1.21526 1.02915 0.94243 0.93262 1.21584 1.00376 0.95260 0.97925 1.21515 1.00820 0.98503 0.94670 1.21525 1.00517 0.95803 0.97675 1.21517 1.00738 0.95633 0.97615 1.21513 1.00047 0.98854 0.94128 0.92708 0.92427 0.91818 0.88869 0.89827 0.77086 0.95956 0.93790 0.78619 0.93708 0.88811 0.92263 0.91181 0.92094 0.92355 0.92639 0.92252 0.92195 0.92644 0.92380 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.20 37.16 0.34 -1.42 16 2 C -0.15 -1.95 6.42 -27.88 -0.18 -2.13 16 3 C 0.52 8.78 7.25 -10.99 -0.08 8.70 16 4 O -0.54 -10.85 12.25 5.56 0.07 -10.79 16 5 N -0.72 -11.09 3.94 -53.81 -0.21 -11.30 16 6 C 0.15 2.46 2.34 -67.93 -0.16 2.30 16 7 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 8 C 0.13 2.89 4.97 -4.04 -0.02 2.87 16 9 N -0.73 -18.83 5.43 -59.91 -0.33 -19.16 16 10 C -0.23 -6.65 9.99 -15.06 -0.15 -6.80 16 11 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 12 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 13 N -0.94 -28.55 13.06 55.49 0.72 -27.82 16 14 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 C -0.10 -1.43 1.56 -90.62 -0.14 -1.57 16 19 C -0.11 -1.51 4.85 -26.73 -0.13 -1.64 16 20 C -0.12 -1.35 5.92 -26.73 -0.16 -1.50 16 21 C -0.12 -1.21 5.92 -26.74 -0.16 -1.37 16 22 C -0.12 -1.27 5.93 -26.71 -0.16 -1.43 16 23 C -0.11 -1.29 5.05 -26.71 -0.13 -1.43 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 26 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.40 5.16 8.83 -40.82 -0.36 4.80 16 30 H 0.02 0.49 6.71 -51.93 -0.35 0.14 16 31 H 0.04 1.06 6.32 -51.93 -0.33 0.73 16 32 H 0.38 10.09 7.33 -40.82 -0.30 9.79 16 33 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.09 1.60 6.17 -51.93 -0.32 1.28 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.03 6.54 -51.93 -0.34 0.69 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.70 7.60 -51.93 -0.39 0.31 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -32.61 340.01 -8.72 -41.33 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -7.85 Total: 10.55 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.22 Total: -6.00 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.19 Total: -58.28 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.61 -8.72 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482401708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.891 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds