Wall clock time and date at job start Mon Mar 30 2020 19:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46846 * 2 1 4 4 O 1.21281 * 120.00149 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99896 * 179.97438 * 3 2 1 6 6 C 1.46503 * 119.99914 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.46913 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47269 * 300.00349 * 6 5 3 9 9 N 1.46505 * 109.47212 * 304.99931 * 8 6 5 10 10 C 1.36936 * 119.99992 * 179.97438 * 9 8 6 11 11 H 1.08006 * 119.99834 * 0.02562 * 10 9 8 12 12 C 1.38801 * 120.00093 * 180.02562 * 10 9 8 13 13 N 1.31619 * 120.00176 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00265 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46725 * 59.99976 * 14 12 10 16 16 H 1.48498 * 109.47172 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46920 * 300.00189 * 14 12 10 18 18 C 1.52997 * 109.46834 * 60.00731 * 6 5 3 19 19 C 1.53000 * 109.46704 * 179.97438 * 18 6 5 20 20 C 1.53005 * 109.47029 * 179.97438 * 19 18 6 21 21 C 1.53001 * 109.46939 * 59.99699 * 20 19 18 22 22 C 1.52991 * 109.47684 * 300.00395 * 21 20 19 23 23 C 1.52997 * 109.47504 * 59.99762 * 18 6 5 24 24 H 1.09004 * 109.46741 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46917 * 299.99256 * 1 2 3 26 26 H 1.09000 * 109.47403 * 59.99798 * 1 2 3 27 27 H 1.09001 * 109.46917 * 240.00744 * 2 1 3 28 28 H 1.09000 * 109.47403 * 120.00202 * 2 1 3 29 29 H 0.97005 * 120.00302 * 0.02562 * 5 3 2 30 30 H 1.09002 * 109.47153 * 184.99923 * 8 6 5 31 31 H 1.09001 * 109.46832 * 65.00114 * 8 6 5 32 32 H 0.96996 * 119.99606 * 0.02562 * 9 8 6 33 33 H 0.97001 * 120.00803 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.47016 * 299.99503 * 18 6 5 35 35 H 1.08993 * 109.47376 * 299.99617 * 19 18 6 36 36 H 1.08992 * 109.47261 * 60.00195 * 19 18 6 37 37 H 1.09002 * 109.47110 * 299.99981 * 20 19 18 38 38 H 1.08994 * 109.47689 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.47255 * 179.97438 * 21 20 19 40 40 H 1.09006 * 109.46733 * 60.00638 * 21 20 19 41 41 H 1.09006 * 109.47233 * 299.99936 * 22 21 20 42 42 H 1.09004 * 109.47763 * 179.97438 * 22 21 20 43 43 H 1.09004 * 109.47346 * 300.00076 * 23 18 6 44 44 H 1.09002 * 109.47196 * 59.99850 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8456 3.0484 0.0011 7 1 4.9357 3.0484 0.0010 8 6 3.3360 3.7701 -1.2480 9 7 3.7239 3.0139 -2.4414 10 6 3.3748 3.4699 -3.6844 11 1 2.8137 4.3873 -3.7852 12 6 3.7418 2.7532 -4.8150 13 7 4.4251 1.6350 -4.6923 14 14 3.2661 3.3756 -6.5108 15 1 3.8597 4.7192 -6.7294 16 1 3.7740 2.4368 -7.5432 17 1 1.7871 3.4661 -6.6080 18 6 3.3353 3.7692 1.2505 19 6 3.8458 5.2115 1.2513 20 6 3.3349 5.9325 2.5004 21 6 3.8436 5.2106 3.7498 22 6 3.3333 3.7683 3.7489 23 6 3.8450 3.0475 2.4996 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.9878 0.9299 0.0005 30 1 3.7706 4.7687 -1.2935 31 1 2.2497 3.8482 -1.2046 32 1 4.2275 2.1898 -2.3508 33 1 4.6814 1.1338 -5.4823 34 1 2.2453 3.7691 1.2501 35 1 4.9357 5.2112 1.2519 36 1 3.4830 5.7258 0.3615 37 1 2.2449 5.9329 2.4995 38 1 3.6982 6.9601 2.5009 39 1 3.4801 5.7245 4.6397 40 1 4.9337 5.2103 3.7508 41 1 2.2432 3.7686 3.7480 42 1 3.6960 3.2539 4.6388 43 1 3.4817 2.0198 2.4992 44 1 4.9350 3.0475 2.4999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482401708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:45 Heat of formation + Delta-G solvation = -80.015366 kcal Electronic energy + Delta-G solvation = -21908.515402 eV Core-core repulsion = 18858.749179 eV Total energy + Delta-G solvation = -3049.766223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24944 -39.18024 -36.98823 -35.30604 -33.83358 -32.83931 -31.96918 -31.49051 -28.52469 -26.06107 -24.95783 -23.70660 -22.95502 -22.14321 -20.83425 -20.28904 -19.16690 -18.25339 -17.07666 -16.60296 -16.41321 -16.02065 -15.55954 -15.23467 -15.09785 -14.81097 -14.77709 -14.50891 -14.12847 -13.67183 -13.34159 -13.23676 -12.97703 -12.94215 -12.76419 -12.68312 -12.60232 -12.48214 -12.15587 -12.00202 -11.97307 -11.84449 -11.79262 -11.37571 -11.12757 -10.92344 -10.82621 -10.36287 -9.77154 -8.94642 -7.95976 -5.22331 1.43771 1.46663 1.52801 1.88844 2.44524 2.55580 3.37006 3.61213 3.85855 3.89174 3.99355 4.11260 4.22977 4.29336 4.32368 4.37134 4.49507 4.55091 4.62267 4.68271 4.70037 4.76161 4.81819 4.85103 4.95628 4.99382 5.09397 5.11594 5.19221 5.24419 5.28717 5.32578 5.35268 5.38878 5.42503 5.45882 5.51723 5.64472 5.80808 6.27094 6.79566 7.33905 7.52243 8.09219 8.37334 9.26838 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.005836 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.668255 B = 4796.928704 C = 5872.186206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.140 4.140 3 C 0.509 3.491 4 O -0.577 6.577 5 N -0.711 5.711 6 C 0.156 3.844 7 H 0.093 0.907 8 C 0.140 3.860 9 N -0.733 5.733 10 C -0.246 4.246 11 H 0.061 0.939 12 C -0.068 4.068 13 N -0.963 5.963 14 Si 0.968 3.032 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.285 1.285 18 C -0.089 4.089 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.102 4.102 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.093 0.907 28 H 0.123 0.877 29 H 0.410 0.590 30 H 0.022 0.978 31 H 0.014 0.986 32 H 0.376 0.624 33 H 0.252 0.748 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -0.748 18.799 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.180 4.180 3 C 0.297 3.703 4 O -0.457 6.457 5 N -0.361 5.361 6 C 0.050 3.950 7 H 0.111 0.889 8 C 0.012 3.988 9 N -0.376 5.376 10 C -0.378 4.378 11 H 0.079 0.921 12 C -0.261 4.261 13 N -0.614 5.614 14 Si 0.797 3.203 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.212 1.212 18 C -0.109 4.109 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.139 4.139 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.141 0.859 29 H 0.245 0.755 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.209 0.791 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.867 0.024 18.682 18.702 hybrid contribution 0.080 -0.205 -1.516 1.532 sum -0.787 -0.180 17.165 17.184 Atomic orbital electron populations 1.21469 0.93596 1.02301 1.01465 1.21670 0.98232 0.92482 1.05632 1.21218 0.82281 0.92508 0.74302 1.90603 1.56431 1.47749 1.50886 1.45765 1.07094 1.08464 1.74787 1.21143 0.98323 0.81769 0.93731 0.88910 1.21162 0.97168 0.94028 0.86414 1.42301 1.66496 1.27789 1.00977 1.19494 1.27845 1.05060 0.85430 0.92084 1.25419 1.01725 0.97889 1.01036 1.69766 1.44964 1.17613 1.29048 0.85295 0.77608 0.77385 0.79980 1.20463 1.21458 1.21155 1.21379 1.01011 0.95039 0.93473 1.21578 1.00936 0.94586 0.98085 1.21499 1.00126 0.99209 0.94466 1.21516 1.01076 0.95253 0.97298 1.21511 1.00039 0.96144 0.97628 1.21465 1.00727 0.98540 0.93182 0.89684 0.92703 0.95006 0.88854 0.85886 0.75453 0.96070 0.96756 0.79122 0.93933 0.91802 0.91154 0.93533 0.93268 0.91131 0.91127 0.91233 0.93408 0.90657 0.92429 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.20 71.98 0.66 -2.72 16 2 C -0.14 -3.56 6.42 29.85 0.19 -3.37 16 3 C 0.51 17.22 7.25 87.66 0.64 17.85 16 4 O -0.58 -24.30 12.25 -3.03 -0.04 -24.34 16 5 N -0.71 -21.65 3.94 -442.53 -1.74 -23.39 16 6 C 0.16 5.14 2.34 44.99 0.11 5.24 16 7 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 8 C 0.14 6.18 4.97 86.38 0.43 6.61 16 9 N -0.73 -38.69 5.43 -343.45 -1.87 -40.56 16 10 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 11 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 12 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 13 N -0.96 -58.80 13.06 21.65 0.28 -58.52 16 14 Si 0.97 47.65 29.55 68.60 2.03 49.68 16 15 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 16 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 17 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 18 C -0.09 -2.55 1.56 -10.80 -0.02 -2.57 16 19 C -0.11 -3.00 4.85 30.60 0.15 -2.85 16 20 C -0.12 -2.52 5.92 30.60 0.18 -2.34 16 21 C -0.11 -2.05 5.92 30.59 0.18 -1.87 16 22 C -0.12 -2.24 5.93 30.61 0.18 -2.06 16 23 C -0.10 -2.24 5.05 30.61 0.15 -2.09 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 26 H 0.03 1.00 8.10 -2.39 -0.02 0.98 16 27 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.41 10.12 8.83 -92.70 -0.82 9.30 16 30 H 0.02 0.95 6.71 -2.39 -0.02 0.94 16 31 H 0.01 0.73 6.32 -2.39 -0.02 0.72 16 32 H 0.38 20.20 7.33 -92.71 -0.68 19.52 16 33 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.06 2.26 6.17 -2.39 -0.01 2.24 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.42 6.54 -2.39 -0.02 1.40 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 1.28 7.60 -2.39 -0.02 1.26 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -71.40 340.01 2.30 -69.10 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: -0.52 Total: 35.43 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 4.16 Total: -7.41 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -3.33 Total: -122.46 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.04 Total: -24.34 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -71.40 2.30 -69.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482401708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.917 kcal (2) G-P(sol) polarization free energy of solvation -71.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds