Wall clock time and date at job start Mon Mar 30 2020 19:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 110.91631 * 2 1 4 4 C 1.54900 * 111.00779 * 236.09668 * 2 1 3 5 5 N 1.47428 * 104.83449 * 204.91826 * 4 2 1 6 6 C 1.34772 * 125.64908 * 204.09618 * 5 4 2 7 7 O 1.21287 * 120.00106 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00387 * 180.02562 * 6 5 4 9 9 C 1.52994 * 109.47429 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47142 * 60.00215 * 9 8 6 11 11 C 1.53002 * 109.47096 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.47416 * 300.00487 * 9 8 6 13 13 C 1.47017 * 108.70522 * 24.12515 * 5 4 2 14 14 C 1.54332 * 107.27026 * 358.94225 * 13 5 4 15 15 H 1.09001 * 110.71417 * 96.34429 * 14 13 5 16 16 N 1.46499 * 110.72184 * 219.44253 * 14 13 5 17 17 C 1.36935 * 119.99938 * 273.54809 * 16 14 13 18 18 H 1.07999 * 120.00083 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99632 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99535 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 0.27829 * 19 17 16 22 22 H 1.48501 * 109.46922 * 269.71949 * 21 19 17 23 23 H 1.48496 * 109.47354 * 29.72145 * 21 19 17 24 24 H 1.48501 * 109.47428 * 149.72253 * 21 19 17 25 25 H 1.08998 * 109.47394 * 296.10152 * 1 2 3 26 26 H 1.08996 * 109.46838 * 56.10000 * 1 2 3 27 27 H 1.09000 * 109.46980 * 176.09928 * 1 2 3 28 28 H 1.09005 * 110.37160 * 86.07690 * 4 2 1 29 29 H 1.09004 * 110.45997 * 323.79921 * 4 2 1 30 30 H 1.08997 * 109.47292 * 300.00315 * 8 6 5 31 31 H 1.09004 * 109.46573 * 59.99683 * 8 6 5 32 32 H 1.09004 * 109.47174 * 59.99672 * 10 9 8 33 33 H 1.09004 * 109.47542 * 179.97438 * 10 9 8 34 34 H 1.08998 * 109.47099 * 300.00148 * 10 9 8 35 35 H 1.08995 * 109.47289 * 60.00602 * 11 9 8 36 36 H 1.09004 * 109.47272 * 180.02562 * 11 9 8 37 37 H 1.08994 * 109.47035 * 300.00133 * 11 9 8 38 38 H 1.08998 * 109.47610 * 59.99651 * 12 9 8 39 39 H 1.09002 * 109.47237 * 180.02562 * 12 9 8 40 40 H 1.09003 * 109.46871 * 299.99536 * 12 9 8 41 41 H 1.09002 * 109.88548 * 239.53190 * 13 5 4 42 42 H 1.08995 * 110.01292 * 118.42889 * 13 5 4 43 43 H 0.97004 * 119.99469 * 93.54877 * 16 14 13 44 44 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 3.4272 -1.2430 -0.7732 6 6 4.4477 -1.5615 -1.5938 7 8 4.3010 -1.4997 -2.7962 8 6 5.7712 -1.9944 -1.0175 9 6 6.7487 -2.2958 -2.1552 10 6 6.9486 -1.0378 -3.0026 11 6 8.0922 -2.7360 -1.5700 12 6 6.1829 -3.4158 -3.0306 13 6 3.4675 -1.2741 0.6961 14 6 2.0861 -0.8078 1.2024 15 1 1.4479 -1.6632 1.4240 16 7 2.2286 0.0497 2.3816 17 6 2.3033 -0.5091 3.6295 18 1 2.2576 -1.5820 3.7443 19 6 2.4388 0.3034 4.7468 20 7 2.5101 -0.2337 5.9463 21 14 2.5114 2.1594 4.5486 22 1 3.9245 2.5846 4.3829 23 1 1.7301 2.5604 3.3512 24 1 1.9373 2.8089 5.7544 25 1 -0.3634 0.4521 0.9228 26 1 -0.3633 0.5732 -0.8530 27 1 -0.3633 -1.0253 -0.0699 28 1 2.1560 -0.1720 -2.0837 29 1 1.4525 -1.6704 -1.4042 30 1 6.1741 -1.1967 -0.3935 31 1 5.6288 -2.8910 -0.4141 32 1 7.3517 -0.2398 -2.3789 33 1 7.6454 -1.2523 -3.8129 34 1 5.9914 -0.7246 -3.4194 35 1 7.9495 -3.6324 -0.9666 36 1 8.7888 -2.9503 -2.3805 37 1 8.4955 -1.9384 -0.9462 38 1 5.2256 -3.1027 -3.4475 39 1 6.8795 -3.6308 -3.8409 40 1 6.0405 -4.3121 -2.4269 41 1 4.2426 -0.5996 1.0601 42 1 3.6662 -2.2882 1.0425 43 1 2.2699 1.0133 2.2783 44 1 2.6044 0.3341 6.7271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054389727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:55 Heat of formation + Delta-G solvation = -36.513409 kcal Electronic energy + Delta-G solvation = -21515.966322 eV Core-core repulsion = 18468.086485 eV Total energy + Delta-G solvation = -3047.879836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.21498 -38.27855 -36.17668 -34.20722 -32.63271 -31.10035 -28.78006 -27.90199 -27.18331 -27.14997 -25.72178 -23.79459 -21.45885 -20.23452 -19.65216 -18.38974 -17.60346 -16.83722 -16.12814 -15.35432 -15.01416 -14.43349 -14.40628 -14.22298 -13.68072 -13.47400 -13.24720 -13.02430 -12.77463 -12.56358 -12.32649 -12.07318 -11.98372 -11.78974 -11.66757 -11.49884 -11.17883 -11.16665 -11.05077 -10.87646 -10.70185 -10.65359 -10.62083 -10.37820 -10.06384 -9.69658 -9.35142 -9.04781 -8.35448 -7.44135 -5.88512 -3.26569 2.81175 3.19833 3.29811 3.32692 3.38938 4.48572 4.57346 4.69063 4.83605 4.90467 5.00178 5.03579 5.22986 5.41749 5.47500 5.48957 5.50265 5.59430 5.65767 5.67005 5.68786 5.74877 5.77127 5.84061 5.85816 5.92257 6.06297 6.08600 6.11459 6.12102 6.21097 6.27614 6.34526 6.43493 6.47673 6.50248 6.60953 6.72958 7.76961 7.86093 8.30215 8.38264 9.06722 9.79054 9.97269 11.29130 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.004961 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.677877 B = 5642.403929 C = 6415.153513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.080 0.920 4 C 0.114 3.886 5 N -0.615 5.615 6 C 0.528 3.472 7 O -0.546 6.546 8 C -0.129 4.129 9 C -0.051 4.051 10 C -0.153 4.153 11 C -0.142 4.142 12 C -0.152 4.152 13 C 0.073 3.927 14 C 0.182 3.818 15 H 0.074 0.926 16 N -0.736 5.736 17 C -0.253 4.253 18 H 0.092 0.908 19 C 0.011 3.989 20 N -0.929 5.929 21 Si 0.882 3.118 22 H -0.284 1.284 23 H -0.276 1.276 24 H -0.290 1.290 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.364 0.636 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -2.660 -15.551 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.099 0.901 4 C -0.009 4.009 5 N -0.349 5.349 6 C 0.318 3.682 7 O -0.426 6.426 8 C -0.169 4.169 9 C -0.051 4.051 10 C -0.210 4.210 11 C -0.200 4.200 12 C -0.209 4.209 13 C -0.052 4.052 14 C 0.070 3.930 15 H 0.092 0.908 16 N -0.378 5.378 17 C -0.383 4.383 18 H 0.110 0.890 19 C -0.186 4.186 20 N -0.576 5.576 21 Si 0.712 3.288 22 H -0.210 1.210 23 H -0.202 1.202 24 H -0.216 1.216 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.197 0.803 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.503 -2.804 -15.974 16.832 hybrid contribution 0.241 1.314 0.290 1.367 sum 4.744 -1.490 -15.684 16.453 Atomic orbital electron populations 1.21623 0.93715 1.01891 1.02025 1.22653 0.96497 0.99615 0.94926 0.90118 1.22220 0.83119 0.98060 0.97477 1.48620 1.12090 1.66106 1.08049 1.20346 0.84952 0.76756 0.86122 1.90533 1.83075 1.54346 1.14610 1.21754 0.92675 1.03204 0.99227 1.20261 0.93859 0.96612 0.94395 1.22102 1.03414 0.96232 0.99220 1.21899 0.96221 1.01171 1.00670 1.22100 1.02926 0.96832 0.99083 1.23226 1.02736 1.01650 0.77625 1.21218 0.91961 0.93776 0.85999 0.90783 1.42712 1.88725 1.04047 1.02327 1.19060 1.43508 0.93989 0.81708 0.88991 1.24668 1.01438 0.97360 0.95096 1.69700 1.56183 1.34332 0.97337 0.86594 0.77923 0.87186 0.77074 1.21008 1.20219 1.21607 0.91484 0.93057 0.92504 0.90967 0.91595 0.88998 0.89037 0.93624 0.93335 0.89771 0.92647 0.92575 0.92649 0.89765 0.93338 0.93625 0.90910 0.91806 0.80259 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.31 37.16 0.35 -1.39 16 2 C -0.12 -1.69 3.25 -88.48 -0.29 -1.98 16 3 H 0.08 1.21 8.00 -51.92 -0.42 0.79 16 4 C 0.11 1.59 6.37 -2.53 -0.02 1.57 16 5 N -0.62 -9.20 3.33 -170.52 -0.57 -9.77 16 6 C 0.53 7.88 7.26 -10.99 -0.08 7.80 16 7 O -0.55 -9.10 11.60 5.55 0.06 -9.04 16 8 C -0.13 -1.61 3.96 -27.89 -0.11 -1.72 16 9 C -0.05 -0.59 0.77 -154.51 -0.12 -0.71 16 10 C -0.15 -1.84 8.18 37.16 0.30 -1.54 16 11 C -0.14 -1.40 8.47 37.16 0.31 -1.08 16 12 C -0.15 -1.81 8.17 37.16 0.30 -1.50 16 13 C 0.07 1.17 6.24 -3.06 -0.02 1.16 16 14 C 0.18 3.16 3.06 -66.09 -0.20 2.95 16 15 H 0.07 1.32 8.02 -51.93 -0.42 0.91 16 16 N -0.74 -15.88 4.98 -51.65 -0.26 -16.14 16 17 C -0.25 -6.62 10.46 -15.06 -0.16 -6.77 16 18 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 19 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 20 N -0.93 -27.90 13.97 55.49 0.78 -27.13 16 21 Si 0.88 21.02 27.74 -169.99 -4.71 16.31 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 29 H 0.07 0.87 7.99 -51.93 -0.41 0.45 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.20 5.51 -51.93 -0.29 0.92 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.18 5.51 -51.93 -0.29 0.90 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.36 7.82 5.57 -40.82 -0.23 7.59 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -29.29 342.17 -7.33 -36.62 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.96 Total: 6.99 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 0.18 Total: -3.01 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.05 Total: -53.03 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.06 Total: -9.04 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.29 -7.33 -36.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054389727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.107 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds