Wall clock time and date at job start Mon Mar 30 2020 19:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.05701 * 2 1 4 4 C 1.53869 * 110.03125 * 238.58006 * 2 1 3 5 5 C 1.54266 * 106.60297 * 240.71772 * 4 2 1 6 6 C 1.54896 * 104.19362 * 336.39367 * 5 4 2 7 7 C 1.54267 * 110.03001 * 121.41737 * 2 1 3 8 8 H 1.08997 * 110.60063 * 24.15560 * 7 2 1 9 9 C 1.53001 * 110.48585 * 261.57047 * 7 2 1 10 10 C 1.50701 * 109.47470 * 178.76818 * 9 7 2 11 11 O 1.21287 * 119.99561 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00344 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00118 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47351 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.47351 * 180.02562 * 14 13 12 16 16 C 1.46499 * 120.00034 * 269.99863 * 15 14 13 17 17 C 1.36935 * 119.99983 * 90.00340 * 15 14 13 18 18 H 1.08000 * 119.99925 * 336.22267 * 17 15 14 19 19 C 1.38806 * 120.00169 * 156.23200 * 17 15 14 20 20 N 1.31618 * 120.00147 * 330.46261 * 19 17 15 21 21 Si 1.86800 * 120.00206 * 150.46605 * 19 17 15 22 22 H 1.48498 * 109.47389 * 179.97438 * 21 19 17 23 23 H 1.48508 * 109.47013 * 59.99905 * 21 19 17 24 24 H 1.48500 * 109.47199 * 300.00076 * 21 19 17 25 25 H 1.09000 * 109.46623 * 298.58792 * 1 2 3 26 26 H 1.09004 * 109.46585 * 58.58220 * 1 2 3 27 27 H 1.08995 * 109.47172 * 178.58237 * 1 2 3 28 28 H 1.09002 * 110.03110 * 121.43313 * 4 2 1 29 29 H 1.09006 * 110.07554 * 0.02860 * 4 2 1 30 30 H 1.08998 * 110.49057 * 217.71743 * 5 4 2 31 31 H 1.09000 * 110.59759 * 95.12388 * 5 4 2 32 32 H 1.09000 * 110.75314 * 279.62919 * 6 5 4 33 33 H 1.08998 * 110.75699 * 156.25422 * 6 5 4 34 34 H 1.09002 * 109.47125 * 58.77100 * 9 7 2 35 35 H 1.09004 * 109.47336 * 298.77248 * 9 7 2 36 36 H 0.97000 * 119.99934 * 0.02562 * 12 10 9 37 37 H 1.09002 * 109.47029 * 60.00368 * 13 12 10 38 38 H 1.09004 * 109.47106 * 300.00715 * 13 12 10 39 39 H 1.09002 * 109.47161 * 59.99950 * 14 13 12 40 40 H 1.09004 * 109.47192 * 300.00163 * 14 13 12 41 41 H 1.09007 * 109.47342 * 272.98995 * 16 15 14 42 42 H 1.08999 * 109.47086 * 32.98849 * 16 15 14 43 43 H 1.09000 * 109.47106 * 152.98590 * 16 15 14 44 44 H 0.97009 * 119.99813 * 354.59187 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0571 -0.7536 -1.2336 5 6 2.8874 -1.9407 -0.7035 6 6 3.3136 -1.5008 0.7192 7 6 2.0585 -0.7555 1.2369 8 1 1.3152 -1.4658 1.5988 9 6 2.4393 0.2297 2.3438 10 6 2.9232 -0.5327 3.5503 11 8 2.9603 -1.7448 3.5269 12 7 3.3157 0.1323 4.6549 13 6 3.7867 -0.6089 5.8275 14 6 4.1673 0.3762 6.9345 15 7 4.6389 -0.3649 8.1069 16 6 3.6887 -0.7809 9.1414 17 6 5.9679 -0.6688 8.2358 18 1 6.5968 -0.7232 7.3595 19 6 6.5066 -0.9070 9.4927 20 7 5.9928 -0.3176 10.5514 21 14 7.9610 -2.0640 9.6816 22 1 8.3449 -2.1468 11.1137 23 1 9.1083 -1.5501 8.8909 24 1 7.5864 -3.4143 9.1901 25 1 -0.3632 0.4918 0.9024 26 1 -0.3632 0.5357 -0.8771 27 1 -0.3633 -1.0273 -0.0254 28 1 2.6868 -0.0954 -1.8324 29 1 1.2234 -1.1192 -1.8332 30 1 3.7637 -2.1038 -1.3308 31 1 2.2790 -2.8440 -0.6573 32 1 4.1710 -0.8291 0.6752 33 1 3.5324 -2.3680 1.3424 34 1 1.5677 0.8251 2.6159 35 1 3.2320 0.8877 1.9878 36 1 3.2863 1.1017 4.6735 37 1 4.6581 -1.2043 5.5551 38 1 2.9941 -1.2669 6.1839 39 1 3.2957 0.9713 7.2068 40 1 4.9598 1.0345 6.5783 41 1 3.5670 0.0229 9.8675 42 1 2.7258 -1.0041 8.6818 43 1 4.0661 -1.6711 9.6446 44 1 5.2898 0.3425 10.4457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663188802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:37:12 Heat of formation + Delta-G solvation = -48.151472 kcal Electronic energy + Delta-G solvation = -20578.191820 eV Core-core repulsion = 17529.807319 eV Total energy + Delta-G solvation = -3048.384501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.90288 -38.27875 -36.24387 -34.26467 -31.92599 -31.35657 -31.15240 -28.29427 -26.38300 -25.80346 -24.61854 -22.91569 -20.85005 -20.67336 -19.94102 -19.63199 -17.38636 -16.71983 -16.01411 -15.49074 -15.20970 -14.97130 -14.34401 -14.06957 -13.84073 -13.65969 -13.40351 -13.30749 -13.00536 -12.90278 -12.49937 -12.28427 -11.93105 -11.24044 -11.14051 -11.09159 -10.97122 -10.88744 -10.79830 -10.72279 -10.62948 -10.62832 -10.55774 -10.46941 -10.01276 -9.56778 -9.48641 -8.70819 -8.35544 -6.99838 -6.10787 -3.23913 2.87109 3.41763 3.51194 3.55619 3.72780 4.37511 4.44899 4.51916 4.61772 4.95203 5.03993 5.12129 5.14955 5.26133 5.27030 5.35599 5.40972 5.47877 5.53759 5.55411 5.65689 5.72348 5.74789 5.81449 5.83511 5.89060 5.97823 6.00867 6.16803 6.19986 6.27130 6.39821 6.44460 6.58796 6.61477 6.78972 6.94361 7.07550 7.76608 7.96578 8.48205 8.54625 9.07464 9.82298 10.19678 11.17324 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035140 B = 0.003170 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.631248 B = 8829.474475 C = 9350.547176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.071 4.071 8 H 0.082 0.918 9 C -0.134 4.134 10 C 0.506 3.494 11 O -0.541 6.541 12 N -0.728 5.728 13 C 0.097 3.903 14 C 0.144 3.856 15 N -0.600 5.600 16 C 0.134 3.866 17 C -0.364 4.364 18 H 0.059 0.941 19 C -0.018 4.018 20 N -0.909 5.909 21 Si 1.060 2.940 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.396 0.604 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.037 0.963 40 H 0.053 0.947 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.053 0.947 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.949 3.296 -20.947 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.163 4.163 6 C -0.156 4.156 7 C -0.089 4.089 8 H 0.100 0.900 9 C -0.174 4.174 10 C 0.292 3.708 11 O -0.419 6.419 12 N -0.379 5.379 13 C -0.029 4.029 14 C 0.016 3.984 15 N -0.324 5.324 16 C -0.012 4.012 17 C -0.493 4.493 18 H 0.076 0.924 19 C -0.221 4.221 20 N -0.548 5.548 21 Si 0.890 3.110 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.220 1.220 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.229 0.771 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.072 0.928 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.896 1.682 -19.789 21.762 hybrid contribution -0.998 1.283 -1.110 1.968 sum -9.894 2.964 -20.899 23.312 Atomic orbital electron populations 1.21890 0.95103 1.01804 1.01409 1.21823 0.95586 0.99358 0.94545 0.91026 1.22212 0.99324 0.97152 0.97057 1.22356 0.99327 0.97893 0.96759 1.22569 0.96708 1.00829 0.95465 1.21808 0.98234 0.96126 0.92782 0.89955 1.21765 1.02453 0.99148 0.94078 1.20664 0.77559 0.88450 0.84133 1.90681 1.54252 1.14137 1.82785 1.46126 1.66438 1.10326 1.15024 1.22278 0.99124 0.96514 0.84940 1.20831 0.97468 0.92208 0.87872 1.43812 1.04771 1.63494 1.20279 1.21000 0.90597 0.98449 0.91119 1.19911 0.85452 1.49304 0.94625 0.92358 1.25792 1.03085 1.01249 0.92000 1.70801 1.27450 1.24737 1.31813 0.83606 0.75270 0.76431 0.75728 1.21100 1.21920 1.21958 0.92728 0.92897 0.92594 0.92095 0.91941 0.91995 0.91794 0.92058 0.90178 0.89259 0.89127 0.77137 0.91581 0.92487 0.94419 0.92863 0.96984 0.96617 0.92849 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.84 37.16 0.33 -0.75 16 2 C -0.09 -0.77 3.07 -89.50 -0.27 -1.05 16 3 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 4 C -0.12 -0.96 6.45 -25.62 -0.17 -1.13 16 5 C -0.13 -1.17 6.83 -25.07 -0.17 -1.34 16 6 C -0.12 -1.33 5.63 -24.74 -0.14 -1.47 16 7 C -0.07 -0.73 2.01 -88.96 -0.18 -0.91 16 8 H 0.08 0.99 7.73 -51.93 -0.40 0.59 16 9 C -0.13 -1.35 5.06 -27.88 -0.14 -1.50 16 10 C 0.51 7.41 7.61 -10.99 -0.08 7.33 16 11 O -0.54 -10.13 14.50 5.55 0.08 -10.05 16 12 N -0.73 -10.51 5.56 -60.30 -0.33 -10.84 16 13 C 0.10 1.82 6.00 -4.05 -0.02 1.80 16 14 C 0.14 2.90 5.80 -4.05 -0.02 2.87 16 15 N -0.60 -15.10 2.80 -181.12 -0.51 -15.61 16 16 C 0.13 3.21 8.99 59.85 0.54 3.75 16 17 C -0.36 -10.24 9.46 -15.06 -0.14 -10.39 16 18 H 0.06 1.65 7.98 -52.49 -0.42 1.23 16 19 C -0.02 -0.52 4.61 -17.43 -0.08 -0.60 16 20 N -0.91 -27.32 12.74 55.49 0.71 -26.61 16 21 Si 1.06 25.51 30.01 -169.99 -5.10 20.41 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.67 8.02 -51.93 -0.42 0.26 16 33 H 0.08 1.11 7.06 -51.93 -0.37 0.75 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.40 4.44 8.47 -40.82 -0.35 4.09 16 37 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 40 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 41 H 0.01 0.30 6.87 -51.92 -0.36 -0.06 16 42 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 43 H 0.05 1.39 7.27 -51.93 -0.38 1.01 16 44 H 0.27 8.12 6.37 -40.82 -0.26 7.86 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -32.34 348.15 -8.49 -40.84 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.03 Total: 0.01 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -0.56 Total: -3.38 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.13 Total: -53.06 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.10 Total: 20.41 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.34 -8.49 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663188802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.315 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds