Wall clock time and date at job start Mon Mar 30 2020 19:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.05701 * 2 1 4 4 C 1.53869 * 110.03125 * 238.58006 * 2 1 3 5 5 C 1.54266 * 106.60297 * 240.71772 * 4 2 1 6 6 C 1.54896 * 104.19362 * 336.39367 * 5 4 2 7 7 C 1.54267 * 110.03001 * 121.41737 * 2 1 3 8 8 H 1.08997 * 110.60063 * 24.15560 * 7 2 1 9 9 C 1.53001 * 110.48585 * 261.57047 * 7 2 1 10 10 C 1.50701 * 109.47470 * 178.76818 * 9 7 2 11 11 O 1.21287 * 119.99561 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00344 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00118 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47351 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.47351 * 180.02562 * 14 13 12 16 16 C 1.46499 * 120.00034 * 269.99863 * 15 14 13 17 17 C 1.36935 * 119.99983 * 90.00340 * 15 14 13 18 18 H 1.08000 * 119.99925 * 336.22267 * 17 15 14 19 19 C 1.38806 * 120.00169 * 156.23200 * 17 15 14 20 20 N 1.31618 * 120.00147 * 330.46261 * 19 17 15 21 21 Si 1.86800 * 120.00206 * 150.46605 * 19 17 15 22 22 H 1.48498 * 109.47389 * 179.97438 * 21 19 17 23 23 H 1.48508 * 109.47013 * 59.99905 * 21 19 17 24 24 H 1.48500 * 109.47199 * 300.00076 * 21 19 17 25 25 H 1.09000 * 109.46623 * 298.58792 * 1 2 3 26 26 H 1.09004 * 109.46585 * 58.58220 * 1 2 3 27 27 H 1.08995 * 109.47172 * 178.58237 * 1 2 3 28 28 H 1.09002 * 110.03110 * 121.43313 * 4 2 1 29 29 H 1.09006 * 110.07554 * 0.02860 * 4 2 1 30 30 H 1.08998 * 110.49057 * 217.71743 * 5 4 2 31 31 H 1.09000 * 110.59759 * 95.12388 * 5 4 2 32 32 H 1.09000 * 110.75314 * 279.62919 * 6 5 4 33 33 H 1.08998 * 110.75699 * 156.25422 * 6 5 4 34 34 H 1.09002 * 109.47125 * 58.77100 * 9 7 2 35 35 H 1.09004 * 109.47336 * 298.77248 * 9 7 2 36 36 H 0.97000 * 119.99934 * 0.02562 * 12 10 9 37 37 H 1.09002 * 109.47029 * 60.00368 * 13 12 10 38 38 H 1.09004 * 109.47106 * 300.00715 * 13 12 10 39 39 H 1.09002 * 109.47161 * 59.99950 * 14 13 12 40 40 H 1.09004 * 109.47192 * 300.00163 * 14 13 12 41 41 H 1.09007 * 109.47342 * 272.98995 * 16 15 14 42 42 H 1.08999 * 109.47086 * 32.98849 * 16 15 14 43 43 H 1.09000 * 109.47106 * 152.98590 * 16 15 14 44 44 H 0.97009 * 119.99813 * 354.59187 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0571 -0.7536 -1.2336 5 6 2.8874 -1.9407 -0.7035 6 6 3.3136 -1.5008 0.7192 7 6 2.0585 -0.7555 1.2369 8 1 1.3152 -1.4658 1.5988 9 6 2.4393 0.2297 2.3438 10 6 2.9232 -0.5327 3.5503 11 8 2.9603 -1.7448 3.5269 12 7 3.3157 0.1323 4.6549 13 6 3.7867 -0.6089 5.8275 14 6 4.1673 0.3762 6.9345 15 7 4.6389 -0.3649 8.1069 16 6 3.6887 -0.7809 9.1414 17 6 5.9679 -0.6688 8.2358 18 1 6.5968 -0.7232 7.3595 19 6 6.5066 -0.9070 9.4927 20 7 5.9928 -0.3176 10.5514 21 14 7.9610 -2.0640 9.6816 22 1 8.3449 -2.1468 11.1137 23 1 9.1083 -1.5501 8.8909 24 1 7.5864 -3.4143 9.1901 25 1 -0.3632 0.4918 0.9024 26 1 -0.3632 0.5357 -0.8771 27 1 -0.3633 -1.0273 -0.0254 28 1 2.6868 -0.0954 -1.8324 29 1 1.2234 -1.1192 -1.8332 30 1 3.7637 -2.1038 -1.3308 31 1 2.2790 -2.8440 -0.6573 32 1 4.1710 -0.8291 0.6752 33 1 3.5324 -2.3680 1.3424 34 1 1.5677 0.8251 2.6159 35 1 3.2320 0.8877 1.9878 36 1 3.2863 1.1017 4.6735 37 1 4.6581 -1.2043 5.5551 38 1 2.9941 -1.2669 6.1839 39 1 3.2957 0.9713 7.2068 40 1 4.9598 1.0345 6.5783 41 1 3.5670 0.0229 9.8675 42 1 2.7258 -1.0041 8.6818 43 1 4.0661 -1.6711 9.6446 44 1 5.2898 0.3425 10.4457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663188802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:37:12 Heat of formation + Delta-G solvation = -68.032397 kcal Electronic energy + Delta-G solvation = -20579.053921 eV Core-core repulsion = 17529.807319 eV Total energy + Delta-G solvation = -3049.246602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00354 -39.21351 -38.06451 -35.80861 -33.40741 -32.52531 -32.03398 -29.87723 -28.00359 -27.11454 -25.57741 -24.47883 -22.44588 -21.82000 -21.06908 -20.34854 -19.42182 -17.87861 -17.23163 -16.78421 -16.27434 -16.07499 -15.93920 -15.62952 -15.34670 -14.98884 -14.72696 -14.37694 -14.33671 -13.99602 -13.66412 -13.13871 -13.04933 -12.90011 -12.77940 -12.72942 -12.50068 -12.18625 -11.91351 -11.87856 -11.80444 -11.62554 -11.54585 -11.48400 -11.42133 -11.20331 -10.79894 -10.46791 -10.07211 -9.07567 -8.31817 -5.43180 1.56723 1.63922 1.70283 1.83317 2.19673 2.65025 3.15906 3.53311 3.64420 3.72136 3.79823 4.01600 4.11331 4.20841 4.33683 4.42263 4.44832 4.54004 4.55592 4.56745 4.67250 4.72417 4.77637 4.81090 4.85479 4.93388 4.96437 5.05561 5.08106 5.12023 5.14523 5.21328 5.30694 5.35178 5.38458 5.48257 5.53208 5.63411 5.79165 6.35152 6.62419 6.99079 7.33411 7.72159 8.09820 8.94287 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035140 B = 0.003170 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.631248 B = 8829.474475 C = 9350.547176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.089 0.911 4 C -0.117 4.117 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.071 4.071 8 H 0.060 0.940 9 C -0.123 4.123 10 C 0.501 3.499 11 O -0.588 6.588 12 N -0.717 5.717 13 C 0.119 3.881 14 C 0.148 3.852 15 N -0.620 5.620 16 C 0.143 3.857 17 C -0.370 4.370 18 H 0.051 0.949 19 C -0.067 4.067 20 N -0.934 5.934 21 Si 1.108 2.892 22 H -0.289 1.289 23 H -0.274 1.274 24 H -0.285 1.285 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.415 0.585 37 H 0.032 0.968 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.005 0.995 42 H 0.046 0.954 43 H 0.024 0.976 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.567 4.824 -22.938 25.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.107 0.893 4 C -0.155 4.155 5 C -0.163 4.163 6 C -0.160 4.160 7 C -0.090 4.090 8 H 0.078 0.922 9 C -0.163 4.163 10 C 0.290 3.710 11 O -0.468 6.468 12 N -0.370 5.370 13 C -0.008 4.008 14 C 0.021 3.979 15 N -0.344 5.344 16 C -0.003 4.003 17 C -0.499 4.499 18 H 0.069 0.931 19 C -0.265 4.265 20 N -0.575 5.575 21 Si 0.932 3.068 22 H -0.215 1.215 23 H -0.200 1.200 24 H -0.212 1.212 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.252 0.748 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.538 3.258 -21.826 24.041 hybrid contribution -0.854 0.797 -0.553 1.292 sum -10.392 4.055 -22.378 25.005 Atomic orbital electron populations 1.21890 0.94477 1.01554 1.02249 1.21793 0.96050 0.99745 0.93022 0.89307 1.22217 0.99496 0.96571 0.97178 1.22350 0.99804 0.98418 0.95704 1.22538 0.97502 0.99717 0.96196 1.21795 0.97193 0.96083 0.93975 0.92192 1.21810 1.04234 0.98837 0.91403 1.21569 0.76350 0.88167 0.84951 1.90677 1.55999 1.16519 1.83575 1.45936 1.66047 1.11187 1.13817 1.21687 0.97265 0.95837 0.86032 1.20929 0.98411 0.92137 0.86400 1.44046 1.04159 1.64478 1.21750 1.20869 0.91557 0.96902 0.90954 1.20108 0.86836 1.48693 0.94312 0.93148 1.27054 1.05366 1.02162 0.91936 1.70914 1.28339 1.25822 1.32425 0.82959 0.73234 0.74934 0.75647 1.21462 1.19959 1.21180 0.92382 0.91538 0.93489 0.90857 0.91190 0.91354 0.92518 0.91702 0.93839 0.86308 0.86554 0.74810 0.94955 0.94050 0.91655 0.92723 0.97729 0.93507 0.95662 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.84 71.98 0.64 -1.12 16 2 C -0.09 -1.18 3.07 -10.07 -0.03 -1.21 16 3 H 0.09 0.94 7.84 -2.39 -0.02 0.92 16 4 C -0.12 -1.58 6.45 31.32 0.20 -1.38 16 5 C -0.13 -2.21 6.83 31.67 0.22 -1.99 16 6 C -0.12 -2.71 5.63 31.89 0.18 -2.53 16 7 C -0.07 -1.38 2.01 -9.72 -0.02 -1.40 16 8 H 0.06 1.43 7.73 -2.39 -0.02 1.41 16 9 C -0.12 -2.15 5.06 29.85 0.15 -2.00 16 10 C 0.50 14.14 7.61 87.66 0.67 14.81 16 11 O -0.59 -22.44 14.50 -3.05 -0.04 -22.48 16 12 N -0.72 -19.54 5.56 -463.07 -2.57 -22.12 16 13 C 0.12 4.41 6.00 86.38 0.52 4.93 16 14 C 0.15 5.77 5.80 86.38 0.50 6.27 16 15 N -0.62 -31.19 2.80 -726.95 -2.03 -33.22 16 16 C 0.14 6.86 8.99 127.77 1.15 8.00 16 17 C -0.37 -20.95 9.46 84.03 0.80 -20.16 16 18 H 0.05 2.88 7.98 -2.91 -0.02 2.86 16 19 C -0.07 -3.87 4.61 84.86 0.39 -3.48 16 20 N -0.93 -56.85 12.74 21.65 0.28 -56.57 16 21 Si 1.11 51.73 30.01 68.60 2.06 53.79 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.86 7.67 -2.38 -0.02 0.84 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.36 8.02 -2.39 -0.02 1.34 16 33 H 0.04 1.27 7.06 -2.39 -0.02 1.26 16 34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 1.51 8.10 -2.39 -0.02 1.49 16 36 H 0.42 8.09 8.47 -92.71 -0.79 7.30 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 40 H 0.05 2.12 8.04 -2.39 -0.02 2.10 16 41 H 0.00 0.23 6.87 -2.38 -0.02 0.21 16 42 H 0.05 1.92 8.09 -2.39 -0.02 1.90 16 43 H 0.02 1.32 7.27 -2.39 -0.02 1.30 16 44 H 0.26 15.83 6.37 -92.70 -0.59 15.24 16 Total: -1.00 -71.79 348.15 3.39 -68.41 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.34 Total: 13.46 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.36 Total: -1.26 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -4.33 Total: -111.91 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.04 Total: -22.48 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 2.06 Total: 53.79 kcal Total: -71.79 3.39 -68.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663188802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.373 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds