Wall clock time and date at job start Mon Mar 30 2020 19:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.53840 * 2 1 4 4 C 1.54971 * 110.52679 * 122.62401 * 2 1 3 5 5 C 1.54891 * 102.77622 * 156.56741 * 4 2 1 6 6 C 1.54269 * 104.19812 * 322.08814 * 5 4 2 7 7 C 1.53880 * 106.59808 * 23.60981 * 6 5 4 8 8 H 1.09004 * 110.02696 * 240.67039 * 7 6 5 9 9 C 1.52996 * 110.03178 * 119.28312 * 7 6 5 10 10 C 1.50700 * 109.46838 * 67.09504 * 9 7 6 11 11 O 1.21280 * 120.00394 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99905 * 179.97438 * 10 9 7 13 13 C 1.46494 * 120.00152 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47361 * 180.02562 * 13 12 10 15 15 N 1.46494 * 109.47361 * 180.02562 * 14 13 12 16 16 C 1.46502 * 120.00036 * 89.99895 * 15 14 13 17 17 C 1.36938 * 120.00139 * 270.00243 * 15 14 13 18 18 H 1.07999 * 120.00057 * 334.60504 * 17 15 14 19 19 C 1.38818 * 120.00009 * 154.60921 * 17 15 14 20 20 N 1.31618 * 119.99903 * 3.91697 * 19 17 15 21 21 Si 1.86800 * 119.99547 * 183.91431 * 19 17 15 22 22 H 1.48491 * 109.47600 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46884 * 120.00248 * 21 19 17 24 24 H 1.48507 * 109.46690 * 239.99647 * 21 19 17 25 25 H 1.08999 * 109.46979 * 182.61478 * 1 2 3 26 26 H 1.08992 * 109.47553 * 302.61466 * 1 2 3 27 27 H 1.09001 * 109.46721 * 62.61940 * 1 2 3 28 28 H 1.09004 * 110.71730 * 38.26209 * 4 2 1 29 29 H 1.08993 * 110.76719 * 274.90569 * 4 2 1 30 30 H 1.08997 * 110.49144 * 203.40355 * 5 4 2 31 31 H 1.09005 * 110.48546 * 80.76662 * 5 4 2 32 32 H 1.08999 * 110.02926 * 264.32341 * 6 5 4 33 33 H 1.09001 * 110.03135 * 142.88690 * 6 5 4 34 34 H 1.08993 * 109.47375 * 307.09125 * 9 7 6 35 35 H 1.09000 * 109.46637 * 187.09199 * 9 7 6 36 36 H 0.97000 * 119.99630 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.47036 * 59.99882 * 13 12 10 38 38 H 1.09000 * 109.47411 * 300.00079 * 13 12 10 39 39 H 1.09007 * 109.47018 * 60.00204 * 14 13 12 40 40 H 1.09000 * 109.46812 * 300.00310 * 14 13 12 41 41 H 1.09001 * 109.47491 * 264.47048 * 16 15 14 42 42 H 1.08999 * 109.47105 * 144.46591 * 16 15 14 43 43 H 1.08995 * 109.46990 * 24.46709 * 16 15 14 44 44 H 0.96996 * 119.99876 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0734 -0.7824 1.2223 5 6 3.4915 -1.1993 0.7593 6 6 3.3164 -1.5415 -0.7347 7 6 2.0700 -0.7789 -1.2172 8 1 1.3173 -1.4817 -1.5745 9 6 2.4509 0.1939 -2.3349 10 6 2.8762 -0.5833 -3.5539 11 8 2.8753 -1.7959 -3.5309 12 7 3.2577 0.0691 -4.6699 13 6 3.6717 -0.6864 -5.8548 14 6 4.0525 0.2864 -6.9727 15 7 4.4659 -0.4691 -8.1577 16 6 3.4734 -0.8535 -9.1644 17 6 5.7800 -0.8162 -8.3244 18 1 6.5570 -0.2299 -7.8564 19 6 6.1136 -1.9216 -9.0950 20 7 5.1733 -2.5904 -9.7282 21 14 7.8970 -2.4598 -9.2334 22 1 8.7529 -1.5477 -8.4330 23 1 8.0366 -3.8468 -8.7214 24 1 8.3193 -2.4126 -10.6564 25 1 -0.3633 -1.0266 0.0469 26 1 -0.3634 0.5538 0.8655 27 1 -0.3633 0.4726 -0.9126 28 1 1.4589 -1.6602 1.4225 29 1 2.1273 -0.1389 2.1003 30 1 3.8321 -2.0738 1.3136 31 1 4.1912 -0.3725 0.8819 32 1 3.1683 -2.6144 -0.8571 33 1 4.1925 -1.2184 -1.2969 34 1 3.2738 0.8261 -2.0017 35 1 1.5915 0.8169 -2.5828 36 1 3.2588 1.0389 -4.6882 37 1 2.8491 -1.3192 -6.1879 38 1 4.5314 -1.3088 -5.6068 39 1 4.8753 0.9189 -6.6392 40 1 3.1930 0.9091 -7.2208 41 1 3.1303 -1.8691 -8.9673 42 1 3.9249 -0.8084 -10.1555 43 1 2.6265 -0.1688 -9.1196 44 1 5.4063 -3.3630 -10.2664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663188803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:37:17 Heat of formation + Delta-G solvation = -42.999193 kcal Electronic energy + Delta-G solvation = -20660.306207 eV Core-core repulsion = 17612.145126 eV Total energy + Delta-G solvation = -3048.161081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.83852 -38.16616 -35.98524 -34.04676 -31.78440 -31.39082 -31.12551 -28.20698 -26.23589 -25.84238 -24.59207 -22.90038 -20.82907 -20.60631 -19.99957 -19.39156 -16.85143 -16.50334 -16.07063 -15.43894 -15.03313 -14.82460 -14.66559 -13.92844 -13.84762 -13.61195 -13.25730 -13.15639 -12.83874 -12.51107 -12.24383 -12.10556 -11.95914 -11.15226 -11.12137 -11.00734 -10.92904 -10.83446 -10.75675 -10.71319 -10.64094 -10.57940 -10.41821 -10.21147 -10.01070 -9.88869 -9.44166 -8.58527 -8.50052 -6.79219 -5.75343 -3.23240 2.98949 3.37503 3.45013 3.46844 3.56356 4.41173 4.47842 4.51248 4.57739 5.01729 5.11584 5.18428 5.19715 5.34319 5.39274 5.40729 5.45732 5.53267 5.61169 5.67416 5.68904 5.77349 5.85802 5.89790 5.93314 5.97959 6.05817 6.06790 6.21461 6.29398 6.35827 6.43773 6.72543 6.77652 6.78518 7.02257 7.47174 7.76012 7.84587 7.89570 8.39950 8.61025 9.23497 9.83567 10.32886 11.29391 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.003390 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.248050 B = 8257.438963 C = 8801.293921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.128 4.128 6 C -0.110 4.110 7 C -0.071 4.071 8 H 0.080 0.920 9 C -0.135 4.135 10 C 0.503 3.497 11 O -0.541 6.541 12 N -0.728 5.728 13 C 0.095 3.905 14 C 0.145 3.855 15 N -0.600 5.600 16 C 0.165 3.835 17 C -0.260 4.260 18 H 0.070 0.930 19 C 0.007 3.993 20 N -0.906 5.906 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.290 1.290 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.394 0.606 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.026 0.974 42 H 0.055 0.945 43 H -0.008 1.008 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 8.234 18.967 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.165 4.165 6 C -0.148 4.148 7 C -0.090 4.090 8 H 0.098 0.902 9 C -0.175 4.175 10 C 0.289 3.711 11 O -0.418 6.418 12 N -0.380 5.380 13 C -0.031 4.031 14 C 0.017 3.983 15 N -0.323 5.323 16 C 0.021 3.979 17 C -0.389 4.389 18 H 0.088 0.912 19 C -0.192 4.192 20 N -0.551 5.551 21 Si 0.734 3.266 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.217 1.217 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.227 0.773 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.011 0.989 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.788 7.194 18.787 21.573 hybrid contribution 0.968 -0.024 -0.187 0.986 sum -6.820 7.170 18.600 21.069 Atomic orbital electron populations 1.21810 0.95065 1.01868 1.01449 1.22069 0.95395 0.99202 0.94621 0.90733 1.22567 0.96399 0.99647 0.97084 1.22405 0.96798 1.00791 0.96544 1.22103 0.97437 1.00759 0.94504 1.21593 0.98139 0.96169 0.93124 0.90172 1.21834 1.02615 0.99105 0.93941 1.20686 0.77466 0.88609 0.84387 1.90703 1.53423 1.14128 1.83509 1.46235 1.67704 1.10164 1.13883 1.22459 0.99846 0.96604 0.84188 1.20979 0.97384 0.92918 0.87051 1.43886 1.05693 1.65150 1.17608 1.20919 0.88438 0.95557 0.93009 1.19259 0.82880 1.07158 1.29645 0.91197 1.25199 0.97723 0.96377 0.99857 1.70093 1.30846 1.20617 1.33556 0.86177 0.84456 0.78575 0.77345 1.20276 1.21456 1.21652 0.92583 0.92869 0.92655 0.91511 0.91911 0.91954 0.91935 0.91502 0.91987 0.89222 0.89356 0.77326 0.92399 0.91524 0.93444 0.94108 0.95577 0.92680 0.98924 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.12 37.16 0.34 -0.78 16 2 C -0.09 -0.80 2.99 -88.92 -0.27 -1.07 16 3 H 0.07 0.58 7.85 -51.93 -0.41 0.17 16 4 C -0.12 -0.99 6.33 -24.69 -0.16 -1.14 16 5 C -0.13 -1.19 6.83 -25.07 -0.17 -1.36 16 6 C -0.11 -1.31 5.37 -25.61 -0.14 -1.45 16 7 C -0.07 -0.78 2.12 -89.50 -0.19 -0.97 16 8 H 0.08 1.02 7.64 -51.93 -0.40 0.62 16 9 C -0.13 -1.43 4.84 -27.89 -0.14 -1.57 16 10 C 0.50 7.77 7.37 -10.98 -0.08 7.69 16 11 O -0.54 -10.77 15.10 5.56 0.08 -10.69 16 12 N -0.73 -10.97 5.56 -60.30 -0.33 -11.31 16 13 C 0.09 1.87 6.00 -4.04 -0.02 1.85 16 14 C 0.15 2.90 5.82 -4.04 -0.02 2.88 16 15 N -0.60 -15.22 2.93 -181.12 -0.53 -15.76 16 16 C 0.17 4.15 8.99 59.85 0.54 4.69 16 17 C -0.26 -7.19 9.67 -15.06 -0.15 -7.34 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C 0.01 0.19 5.38 -17.43 -0.09 0.10 16 20 N -0.91 -26.65 10.13 55.49 0.56 -26.09 16 21 Si 0.90 22.07 29.56 -169.99 -5.02 17.05 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.81 7.36 -51.93 -0.38 0.43 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.39 4.52 8.47 -40.82 -0.35 4.17 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.05 0.90 8.04 -51.92 -0.42 0.48 16 40 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 41 H 0.03 0.71 7.43 -51.93 -0.39 0.32 16 42 H 0.05 1.49 7.04 -51.93 -0.37 1.12 16 43 H -0.01 -0.17 7.83 -51.93 -0.41 -0.58 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 348.67 15.07 5.25 5.25 Total: -1.00 -31.97 348.67 -8.67 -40.64 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -8.13 Total: -0.62 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -0.55 Total: 1.52 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.30 Total: -53.15 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.97 -8.67 -40.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663188803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.364 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds