Wall clock time and date at job start Mon Mar 30 2020 19:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.05372 * 2 1 4 4 C 1.54265 * 110.03565 * 121.41968 * 2 1 3 5 5 C 1.54891 * 104.19662 * 142.89928 * 4 2 1 6 6 C 1.54891 * 102.74647 * 322.05380 * 5 4 2 7 7 C 1.53879 * 110.03501 * 238.58894 * 2 1 3 8 8 H 1.09001 * 110.03555 * 121.42864 * 7 2 1 9 9 C 1.52993 * 110.02987 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47026 * 175.00031 * 9 7 2 11 11 O 1.21282 * 120.00168 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99959 * 179.97438 * 10 9 7 13 13 C 1.46508 * 119.99897 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46818 * 180.02562 * 13 12 10 15 15 N 1.46508 * 109.46818 * 180.02562 * 14 13 12 16 16 C 1.46502 * 120.00187 * 270.00204 * 15 14 13 17 17 C 1.36939 * 119.99594 * 90.00131 * 15 14 13 18 18 H 1.07997 * 119.99888 * 22.35385 * 17 15 14 19 19 C 1.38812 * 119.99787 * 202.34013 * 17 15 14 20 20 N 1.31614 * 120.00040 * 11.35629 * 19 17 15 21 21 Si 1.86796 * 119.99827 * 191.34602 * 19 17 15 22 22 H 1.48496 * 109.47259 * 90.01029 * 21 19 17 23 23 H 1.48500 * 109.47135 * 210.00774 * 21 19 17 24 24 H 1.48499 * 109.47369 * 330.00477 * 21 19 17 25 25 H 1.09002 * 109.46707 * 181.40914 * 1 2 3 26 26 H 1.08994 * 109.47725 * 301.41176 * 1 2 3 27 27 H 1.09000 * 109.47153 * 61.41983 * 1 2 3 28 28 H 1.09004 * 110.48520 * 261.57340 * 4 2 1 29 29 H 1.09000 * 110.48335 * 24.21364 * 4 2 1 30 30 H 1.09002 * 110.75356 * 203.74246 * 5 4 2 31 31 H 1.08994 * 110.91661 * 80.44693 * 5 4 2 32 32 H 1.08999 * 110.48975 * 279.26734 * 6 5 4 33 33 H 1.09000 * 110.59150 * 156.67523 * 6 5 4 34 34 H 1.09000 * 109.47523 * 295.00045 * 9 7 2 35 35 H 1.08998 * 109.47232 * 55.00581 * 9 7 2 36 36 H 0.96998 * 120.00546 * 0.02562 * 12 10 9 37 37 H 1.08992 * 109.47162 * 300.00223 * 13 12 10 38 38 H 1.08998 * 109.46641 * 60.00457 * 13 12 10 39 39 H 1.09000 * 109.47719 * 300.00113 * 14 13 12 40 40 H 1.08998 * 109.47182 * 60.00738 * 14 13 12 41 41 H 1.09003 * 109.46604 * 94.20902 * 16 15 14 42 42 H 1.08997 * 109.47179 * 214.20942 * 16 15 14 43 43 H 1.08996 * 109.46814 * 334.21661 * 16 15 14 44 44 H 0.96994 * 120.00471 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0585 -0.7555 1.2368 5 6 3.3138 -1.5006 0.7190 6 6 2.8875 -1.9406 -0.7037 7 6 2.0571 -0.7534 -1.2338 8 1 2.6867 -0.0952 -1.8325 9 6 0.8862 -1.2672 -2.0739 10 6 1.4128 -1.8946 -3.3389 11 8 2.6071 -1.9280 -3.5477 12 7 0.5567 -2.4196 -4.2377 13 6 1.0686 -3.0290 -5.4678 14 6 -0.1024 -3.5429 -6.3078 15 7 0.4095 -4.1529 -7.5376 16 6 0.5938 -3.3352 -8.7392 17 6 0.7158 -5.4873 -7.5638 18 1 0.2666 -6.1586 -6.8469 19 6 1.6035 -5.9771 -8.5120 20 7 2.3190 -5.1432 -9.2364 21 14 1.7827 -7.8199 -8.7595 22 1 0.8166 -8.2772 -9.7904 23 1 3.1652 -8.1273 -9.2059 24 1 1.5088 -8.5204 -7.4790 25 1 -0.3633 -1.0274 0.0253 26 1 -0.3634 0.5356 0.8770 27 1 -0.3633 0.4916 -0.9024 28 1 2.3297 -0.0536 2.0254 29 1 1.3142 -1.4660 1.5965 30 1 3.5327 -2.3678 1.3421 31 1 4.1730 -0.8315 0.6753 32 1 2.2772 -2.8425 -0.6573 33 1 3.7626 -2.1049 -1.3324 34 1 0.3290 -2.0109 -1.5042 35 1 0.2285 -0.4358 -2.3273 36 1 -0.3985 -2.3933 -4.0706 37 1 1.6251 -2.2850 -6.0375 38 1 1.7269 -3.8600 -5.2147 39 1 -0.6594 -4.2869 -5.7383 40 1 -0.7604 -2.7116 -6.5609 41 1 1.6230 -2.9788 -8.7817 42 1 0.3803 -3.9357 -9.6235 43 1 -0.0848 -2.4829 -8.7061 44 1 2.9395 -5.4854 -9.8987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663188804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:37:21 Heat of formation + Delta-G solvation = -38.678065 kcal Electronic energy + Delta-G solvation = -20751.374990 eV Core-core repulsion = 17703.401287 eV Total energy + Delta-G solvation = -3047.973703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.93448 -38.22625 -35.98469 -34.03791 -32.07631 -31.29133 -30.86863 -28.22598 -26.00339 -25.72496 -25.01593 -23.01376 -20.90919 -20.61542 -20.17536 -18.57157 -17.21093 -16.71841 -15.83048 -15.44529 -15.16955 -14.81179 -14.64922 -14.03309 -13.83295 -13.57744 -13.29346 -13.22655 -12.57405 -12.49173 -12.33540 -12.22096 -11.90958 -11.18271 -11.04862 -10.90126 -10.88625 -10.84223 -10.81556 -10.72318 -10.61291 -10.56058 -10.35270 -10.25931 -9.98162 -9.88763 -9.40545 -8.58850 -8.51885 -6.81367 -5.73612 -3.20970 3.00849 3.38434 3.44423 3.46563 3.58635 4.43676 4.46657 4.50783 4.58046 5.04944 5.09416 5.17218 5.22609 5.28693 5.37249 5.41670 5.49368 5.52168 5.66028 5.66514 5.69886 5.80298 5.81087 5.90041 5.90806 6.00147 6.04330 6.09502 6.26176 6.29612 6.33642 6.43921 6.71867 6.75016 6.79974 7.03330 7.37355 7.72537 7.80671 7.91222 8.37878 8.63121 9.21829 9.83893 10.32080 11.31491 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031043 B = 0.003377 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.754643 B = 8288.322661 C = 8706.319361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.119 4.119 5 C -0.128 4.128 6 C -0.113 4.113 7 C -0.072 4.072 8 H 0.079 0.921 9 C -0.136 4.136 10 C 0.501 3.499 11 O -0.541 6.541 12 N -0.729 5.729 13 C 0.095 3.905 14 C 0.144 3.856 15 N -0.597 5.597 16 C 0.162 3.838 17 C -0.260 4.260 18 H 0.070 0.930 19 C 0.003 3.997 20 N -0.906 5.906 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.394 0.606 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.041 0.959 41 H 0.029 0.971 42 H 0.047 0.953 43 H -0.003 1.003 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 10.348 18.509 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.165 4.165 6 C -0.151 4.151 7 C -0.090 4.090 8 H 0.097 0.903 9 C -0.176 4.176 10 C 0.287 3.713 11 O -0.419 6.419 12 N -0.380 5.380 13 C -0.031 4.031 14 C 0.016 3.984 15 N -0.320 5.320 16 C 0.018 3.982 17 C -0.390 4.390 18 H 0.088 0.912 19 C -0.195 4.195 20 N -0.551 5.551 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.226 0.774 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.066 0.934 43 H 0.016 0.984 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.233 10.264 18.152 21.279 hybrid contribution -0.176 -0.963 -0.168 0.993 sum -4.409 9.302 17.984 20.722 Atomic orbital electron populations 1.22018 0.95257 1.01903 1.01457 1.21810 0.95619 0.99269 0.94603 0.91111 1.22445 0.97507 0.98820 0.96912 1.22514 0.97515 0.99725 0.96771 1.22384 1.00318 0.97111 0.95276 1.21541 0.95345 0.97253 0.94908 0.90294 1.21989 0.99723 1.01434 0.94484 1.20772 0.86965 0.78567 0.84985 1.90692 1.15758 1.57687 1.77729 1.46239 1.09726 1.60217 1.21833 1.22461 0.99908 0.97352 0.83356 1.20989 0.93206 0.95795 0.88423 1.43928 1.76235 1.06630 1.05186 1.20846 0.97166 0.91358 0.88843 1.19235 1.20615 0.83115 1.16027 0.91211 1.25068 0.96443 0.97942 1.00078 1.70065 1.26436 1.32647 1.25908 0.86209 0.77017 0.85013 0.78016 1.21436 1.21664 1.20448 0.92245 0.93086 0.92311 0.92085 0.91638 0.91877 0.91685 0.92106 0.90713 0.89066 0.88965 0.77369 0.92398 0.91503 0.93413 0.94064 0.95247 0.93425 0.98412 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 7.88 37.15 0.29 -0.77 16 2 C -0.09 -0.81 3.50 -89.50 -0.31 -1.12 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -0.98 6.36 -25.07 -0.16 -1.14 16 5 C -0.13 -1.21 6.91 -24.74 -0.17 -1.38 16 6 C -0.11 -1.34 5.43 -25.07 -0.14 -1.48 16 7 C -0.07 -0.79 2.55 -89.50 -0.23 -1.02 16 8 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 9 C -0.14 -1.45 3.88 -27.89 -0.11 -1.56 16 10 C 0.50 7.78 7.61 -10.99 -0.08 7.70 16 11 O -0.54 -10.84 14.82 5.56 0.08 -10.76 16 12 N -0.73 -11.02 5.56 -60.29 -0.33 -11.35 16 13 C 0.09 1.88 6.00 -4.04 -0.02 1.86 16 14 C 0.14 2.88 5.82 -4.04 -0.02 2.86 16 15 N -0.60 -15.10 2.93 -181.11 -0.53 -15.63 16 16 C 0.16 4.05 9.01 59.85 0.54 4.59 16 17 C -0.26 -7.20 9.67 -15.06 -0.15 -7.35 16 18 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 19 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 20 N -0.91 -26.77 10.58 55.49 0.59 -26.18 16 21 Si 0.91 22.07 29.57 -169.99 -5.03 17.05 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.06 0.41 6.85 -51.93 -0.36 0.06 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.40 6.62 -51.93 -0.34 0.05 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.51 7.84 -51.93 -0.41 0.11 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.73 7.76 -51.93 -0.40 0.33 16 33 H 0.07 1.06 7.65 -51.93 -0.40 0.67 16 34 H 0.09 0.83 6.91 -51.93 -0.36 0.47 16 35 H 0.09 0.80 6.42 -51.93 -0.33 0.47 16 36 H 0.39 4.52 8.47 -40.82 -0.35 4.17 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 40 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 41 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 42 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 43 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -32.11 342.46 -8.56 -40.67 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.85 Total: -0.14 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -0.65 Total: 1.18 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.28 Total: -53.17 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.11 -8.56 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663188804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.993 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds