Wall clock time and date at job start Mon Mar 30 2020 19:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.01793 * 2 1 4 4 C 1.54264 * 110.07368 * 238.57691 * 2 1 3 5 5 C 1.54896 * 104.19375 * 217.08179 * 4 2 1 6 6 C 1.54967 * 102.77530 * 37.92251 * 5 4 2 7 7 C 1.53882 * 110.03029 * 121.38572 * 2 1 3 8 8 H 1.08992 * 110.02976 * 238.67091 * 7 2 1 9 9 C 1.52999 * 110.02996 * 0.05380 * 7 2 1 10 10 C 1.50700 * 109.46914 * 184.30761 * 9 7 2 11 11 O 1.21276 * 120.00033 * 0.02562 * 10 9 7 12 12 N 1.34781 * 120.00195 * 179.97438 * 10 9 7 13 13 C 1.46492 * 120.00210 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47247 * 180.02562 * 13 12 10 15 15 N 1.46501 * 109.47267 * 180.02562 * 14 13 12 16 16 C 1.46501 * 119.99952 * 270.00243 * 15 14 13 17 17 C 1.36940 * 119.99947 * 89.99844 * 15 14 13 18 18 H 1.08001 * 119.99927 * 213.52203 * 17 15 14 19 19 C 1.38806 * 120.00275 * 33.51737 * 17 15 14 20 20 N 1.31622 * 119.99844 * 27.79267 * 19 17 15 21 21 Si 1.86795 * 120.00566 * 207.78769 * 19 17 15 22 22 H 1.48508 * 109.46768 * 60.00148 * 21 19 17 23 23 H 1.48504 * 109.47284 * 300.00407 * 21 19 17 24 24 H 1.48497 * 109.47554 * 180.02562 * 21 19 17 25 25 H 1.08996 * 109.47257 * 298.61650 * 1 2 3 26 26 H 1.08998 * 109.46464 * 58.61170 * 1 2 3 27 27 H 1.08997 * 109.46836 * 178.61086 * 1 2 3 28 28 H 1.08996 * 110.48720 * 335.76277 * 4 2 1 29 29 H 1.09003 * 110.48532 * 98.27504 * 4 2 1 30 30 H 1.09003 * 110.75228 * 156.25774 * 5 4 2 31 31 H 1.08994 * 110.75907 * 279.44630 * 5 4 2 32 32 H 1.08999 * 110.52650 * 203.42965 * 6 5 4 33 33 H 1.08995 * 110.47704 * 80.76150 * 6 5 4 34 34 H 1.08996 * 109.47911 * 64.30537 * 9 7 2 35 35 H 1.09007 * 109.47076 * 304.30113 * 9 7 2 36 36 H 0.97003 * 119.99666 * 0.02562 * 12 10 9 37 37 H 1.09001 * 109.47240 * 60.00602 * 13 12 10 38 38 H 1.09001 * 109.47204 * 300.00834 * 13 12 10 39 39 H 1.08995 * 109.47240 * 60.00195 * 14 13 12 40 40 H 1.08998 * 109.46608 * 299.99988 * 14 13 12 41 41 H 1.09002 * 109.46471 * 266.22432 * 16 15 14 42 42 H 1.08998 * 109.47240 * 26.22454 * 16 15 14 43 43 H 1.09003 * 109.47056 * 146.22828 * 16 15 14 44 44 H 0.97004 * 120.00152 * 5.69826 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0595 -0.7554 -1.2364 5 6 3.3151 -1.4997 -0.7179 6 6 2.8892 -1.9396 0.7057 7 6 2.0571 -0.7529 1.2342 8 1 2.6852 -0.0939 1.8335 9 6 0.8861 -1.2669 2.0741 10 6 1.4134 -1.9089 3.3314 11 8 2.6081 -1.9508 3.5358 12 7 0.5573 -2.4357 4.2293 13 6 1.0699 -3.0602 5.4512 14 6 -0.1010 -3.5741 6.2913 15 7 0.4116 -4.1982 7.5136 16 6 0.7303 -5.6281 7.5278 17 6 0.5929 -3.4450 8.6427 18 1 1.4031 -3.6730 9.3196 19 6 -0.2645 -2.3885 8.9174 20 7 -1.5032 -2.4136 8.4731 21 14 0.3395 -0.9312 9.9178 22 1 1.4841 -0.2922 9.2200 23 1 0.7751 -1.3976 11.2587 24 1 -0.7606 0.0545 10.0704 25 1 -0.3633 0.4922 0.9021 26 1 -0.3632 0.5353 -0.8773 27 1 -0.3633 -1.0274 -0.0249 28 1 1.3160 -1.4665 -1.5964 29 1 2.3285 -0.0536 -2.0259 30 1 3.5348 -2.3668 -1.3408 31 1 4.1727 -0.8282 -0.6767 32 1 3.7652 -2.1010 1.3339 33 1 2.2800 -2.8422 0.6595 34 1 0.3220 -2.0019 1.5000 35 1 0.2345 -0.4336 2.3374 36 1 -0.3983 -2.4018 4.0660 37 1 1.6346 -2.3257 6.0254 38 1 1.7210 -3.8937 5.1876 39 1 -0.6653 -4.3088 5.7170 40 1 -0.7523 -2.7408 6.5548 41 1 -0.1311 -6.1886 7.8908 42 1 0.9775 -5.9553 6.5179 43 1 1.5817 -5.8040 8.1854 44 1 -1.8420 -3.2047 8.0255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663188805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:37:26 Heat of formation + Delta-G solvation = -42.866246 kcal Electronic energy + Delta-G solvation = -20988.107796 eV Core-core repulsion = 17939.952480 eV Total energy + Delta-G solvation = -3048.155316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.91803 -38.21578 -36.25056 -33.98959 -32.02351 -31.26158 -30.91252 -28.62500 -25.96012 -25.42446 -24.99675 -23.10735 -20.91367 -20.53623 -20.19509 -18.55673 -17.47543 -16.99140 -15.83164 -15.41859 -15.20540 -14.72674 -14.36778 -13.91338 -13.85525 -13.62948 -13.55326 -13.32419 -12.76529 -12.61866 -12.45216 -12.30462 -11.87286 -11.26918 -11.07274 -11.04617 -10.89489 -10.88725 -10.80604 -10.74158 -10.67685 -10.59642 -10.32757 -10.28011 -10.05649 -9.51084 -9.36807 -8.52801 -8.41954 -6.90371 -6.11516 -3.40141 3.02464 3.47082 3.52862 3.61170 3.69500 4.45322 4.48572 4.56729 4.60295 5.07352 5.10777 5.18478 5.24372 5.26024 5.32244 5.40321 5.50591 5.52421 5.57738 5.67814 5.70384 5.82379 5.83695 5.91470 5.96403 6.02000 6.05057 6.13081 6.26723 6.28260 6.32772 6.39826 6.44491 6.59519 6.70880 6.84448 6.90786 7.18331 7.94319 8.02676 8.50566 8.64307 9.04520 9.75202 10.18013 11.08731 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.003868 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.694229 B = 7236.422298 C = 7625.042773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.119 4.119 5 C -0.128 4.128 6 C -0.112 4.112 7 C -0.071 4.071 8 H 0.079 0.921 9 C -0.137 4.137 10 C 0.504 3.496 11 O -0.546 6.546 12 N -0.725 5.725 13 C 0.103 3.897 14 C 0.125 3.875 15 N -0.597 5.597 16 C 0.124 3.876 17 C -0.355 4.355 18 H 0.055 0.945 19 C -0.019 4.019 20 N -0.902 5.902 21 Si 1.059 2.941 22 H -0.291 1.291 23 H -0.291 1.291 24 H -0.284 1.284 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.396 0.604 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.032 0.968 40 H 0.088 0.912 41 H 0.005 0.995 42 H 0.028 0.972 43 H 0.035 0.965 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 2.894 -18.682 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.165 4.165 6 C -0.149 4.149 7 C -0.090 4.090 8 H 0.097 0.903 9 C -0.177 4.177 10 C 0.290 3.710 11 O -0.424 6.424 12 N -0.376 5.376 13 C -0.022 4.022 14 C -0.003 4.003 15 N -0.321 5.321 16 C -0.021 4.021 17 C -0.484 4.484 18 H 0.072 0.928 19 C -0.222 4.222 20 N -0.542 5.542 21 Si 0.888 3.112 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.210 1.210 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.105 0.895 41 H 0.024 0.976 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.085 4.315 -17.881 18.651 hybrid contribution 0.000 -1.600 -0.541 1.689 sum 3.085 2.715 -18.422 18.875 Atomic orbital electron populations 1.22022 0.95194 1.01903 1.01580 1.21810 0.95684 0.99290 0.94517 0.91075 1.22443 0.97477 0.98832 0.96940 1.22529 0.97554 0.99679 0.96752 1.22383 1.00215 0.97121 0.95225 1.21536 0.95330 0.97215 0.94926 0.90287 1.21989 0.99758 1.01470 0.94469 1.20752 0.86891 0.78494 0.84910 1.90661 1.15756 1.58197 1.77782 1.46152 1.09906 1.59552 1.21980 1.22182 0.99406 0.96884 0.83746 1.21117 0.94155 0.98415 0.86575 1.43708 1.77550 1.03435 1.07368 1.21093 0.97581 0.85670 0.97806 1.19911 1.11583 1.14711 1.02156 0.92775 1.25880 0.93001 1.02638 1.00660 1.70804 1.12781 1.32744 1.37823 0.83615 0.75449 0.76398 0.75709 1.21845 1.21763 1.20997 0.92192 0.93067 0.92276 0.91674 0.92069 0.91933 0.91690 0.90772 0.92191 0.89081 0.88783 0.77086 0.91534 0.93253 0.94994 0.89478 0.97648 0.95321 0.94668 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 7.89 37.16 0.29 -0.91 16 2 C -0.09 -0.86 3.50 -89.50 -0.31 -1.18 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -1.01 6.36 -25.07 -0.16 -1.17 16 5 C -0.13 -1.21 6.91 -24.69 -0.17 -1.38 16 6 C -0.11 -1.32 5.40 -25.03 -0.14 -1.46 16 7 C -0.07 -0.82 2.55 -89.50 -0.23 -1.05 16 8 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 9 C -0.14 -1.59 3.88 -27.88 -0.11 -1.70 16 10 C 0.50 8.26 7.61 -10.98 -0.08 8.17 16 11 O -0.55 -11.02 14.78 5.56 0.08 -10.94 16 12 N -0.72 -12.15 5.56 -60.30 -0.33 -12.48 16 13 C 0.10 2.15 6.00 -4.04 -0.02 2.13 16 14 C 0.12 2.80 4.94 -4.04 -0.02 2.78 16 15 N -0.60 -15.09 2.66 -181.12 -0.48 -15.57 16 16 C 0.12 2.69 10.70 59.85 0.64 3.33 16 17 C -0.35 -9.96 9.42 -15.06 -0.14 -10.10 16 18 H 0.05 1.55 7.97 -52.49 -0.42 1.13 16 19 C -0.02 -0.53 4.82 -17.43 -0.08 -0.61 16 20 N -0.90 -26.23 12.16 55.49 0.67 -25.56 16 21 Si 1.06 25.24 30.00 -169.99 -5.10 20.14 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H 0.06 0.48 6.63 -51.93 -0.34 0.13 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 6.84 -51.93 -0.35 0.10 16 28 H 0.06 0.53 7.84 -51.93 -0.41 0.12 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.04 7.63 -51.93 -0.40 0.64 16 33 H 0.06 0.71 7.77 -51.93 -0.40 0.31 16 34 H 0.09 0.90 6.88 -51.93 -0.36 0.54 16 35 H 0.09 0.97 6.47 -51.93 -0.34 0.63 16 36 H 0.40 5.55 8.47 -40.82 -0.35 5.20 16 37 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 40 H 0.09 2.18 5.27 -51.93 -0.27 1.90 16 41 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 42 H 0.03 0.54 8.04 -51.93 -0.42 0.13 16 43 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 44 H 0.27 7.83 7.18 -40.82 -0.29 7.54 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -31.60 342.67 -8.31 -39.90 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.78 Total: 2.48 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.54 Total: -3.14 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.14 Total: -53.61 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.10 Total: 20.14 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.60 -8.31 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663188805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.962 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds