Wall clock time and date at job start Mon Mar 30 2020 19:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47132 * 2 1 4 4 C 1.50703 * 109.46845 * 120.00133 * 2 1 3 5 5 O 1.21277 * 120.00198 * 103.75160 * 4 2 1 6 6 N 1.34785 * 119.99768 * 283.46816 * 4 2 1 7 7 C 1.46500 * 119.99926 * 0.28219 * 6 4 2 8 8 C 1.46498 * 119.99857 * 180.27617 * 6 4 2 9 9 C 1.50703 * 109.46945 * 90.00412 * 8 6 4 10 10 H 1.07998 * 120.00126 * 359.97438 * 9 8 6 11 11 C 1.37871 * 119.99690 * 180.02562 * 9 8 6 12 12 N 1.31511 * 120.00418 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99904 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47283 * 89.99644 * 13 11 9 15 15 H 1.48503 * 109.47322 * 210.00124 * 13 11 9 16 16 H 1.48509 * 109.46837 * 329.99604 * 13 11 9 17 17 N 1.46896 * 109.47209 * 239.99909 * 2 1 3 18 18 C 1.47998 * 110.99979 * 80.16513 * 17 2 1 19 19 C 1.50452 * 112.82772 * 191.34274 * 18 17 2 20 20 C 1.54313 * 108.49500 * 93.72943 * 19 18 17 21 21 C 1.45877 * 112.18611 * 281.46499 * 20 19 18 22 22 C 1.54307 * 112.18495 * 61.12186 * 21 20 19 23 23 C 1.48006 * 110.99886 * 311.44792 * 17 2 1 24 24 H 1.08999 * 109.47380 * 61.01155 * 1 2 3 25 25 H 1.08997 * 109.47460 * 181.01217 * 1 2 3 26 26 H 1.08997 * 109.47221 * 301.01388 * 1 2 3 27 27 H 1.09001 * 109.47107 * 89.99581 * 7 6 4 28 28 H 1.08999 * 109.46607 * 210.00060 * 7 6 4 29 29 H 1.09000 * 109.46908 * 329.99706 * 7 6 4 30 30 H 1.08995 * 109.47196 * 210.00224 * 8 6 4 31 31 H 1.09000 * 109.47237 * 330.00532 * 8 6 4 32 32 H 0.97000 * 119.99970 * 180.02562 * 12 11 9 33 33 H 1.08995 * 108.81427 * 312.21498 * 18 17 2 34 34 H 1.09003 * 108.81145 * 70.48918 * 18 17 2 35 35 H 1.08993 * 109.63005 * 334.02887 * 19 18 17 36 36 H 1.08991 * 109.63409 * 213.43272 * 19 18 17 37 37 H 1.08997 * 108.93611 * 160.76526 * 20 19 18 38 38 H 1.08999 * 108.93847 * 42.16125 * 20 19 18 39 39 H 1.08997 * 108.93653 * 300.42671 * 21 20 19 40 40 H 1.09002 * 108.94075 * 181.82082 * 21 20 19 41 41 H 1.09004 * 109.63020 * 161.76141 * 22 21 20 42 42 H 1.09004 * 109.63175 * 41.17127 * 22 21 20 43 43 H 1.09005 * 108.80833 * 205.70164 * 23 17 2 44 44 H 1.08993 * 108.81115 * 323.96889 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 1.2305 5 8 2.4697 -1.8382 1.1435 6 7 2.0005 -0.0904 2.4268 7 6 1.4720 1.2720 2.5319 8 6 2.4944 -0.7787 3.6220 9 6 3.9637 -0.4923 3.7955 10 1 4.4783 0.1390 3.0862 11 6 4.6513 -1.0370 4.8592 12 7 4.0248 -1.8062 5.7226 13 14 6.4724 -0.6814 5.0747 14 1 6.6439 0.5358 5.9080 15 1 7.1264 -1.8351 5.7431 16 1 7.0948 -0.4623 3.7443 17 7 2.0196 -0.6925 -1.1994 18 6 1.9739 0.1971 -2.3813 19 6 2.2041 -0.5374 -3.6740 20 6 0.8337 -0.9304 -4.2644 21 6 0.2661 -2.1022 -3.6067 22 6 0.0212 -1.8643 -2.1019 23 6 1.3341 -1.9919 -1.3786 24 1 -0.3634 0.4980 -0.8989 25 1 -0.3634 -1.0275 0.0182 26 1 -0.3633 0.5295 0.8807 27 1 0.4007 1.2319 2.7289 28 1 1.9723 1.7937 3.3478 29 1 1.6500 1.8038 1.5972 30 1 1.9493 -0.4242 4.4967 31 1 2.3442 -1.8526 3.5109 32 1 4.5085 -2.1891 6.4711 33 1 0.9975 0.6799 -2.4203 34 1 2.7394 0.9655 -2.2726 35 1 2.7926 -1.4352 -3.4852 36 1 2.7325 0.1098 -4.3739 37 1 0.9543 -1.1444 -5.3264 38 1 0.1458 -0.0926 -4.1500 39 1 0.9517 -2.9412 -3.7253 40 1 -0.6815 -2.3517 -4.0842 41 1 -0.6796 -2.6082 -1.7228 42 1 -0.3847 -0.8640 -1.9505 43 1 1.9848 -2.6572 -1.9461 44 1 1.1539 -2.4324 -0.3981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078633708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:54 Heat of formation + Delta-G solvation = -25.150514 kcal Electronic energy + Delta-G solvation = -22029.405540 eV Core-core repulsion = 18982.018436 eV Total energy + Delta-G solvation = -3047.387104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17231 -38.30126 -34.96047 -34.57887 -32.56775 -32.23579 -30.26372 -27.65276 -26.73999 -25.75229 -24.89074 -23.74227 -21.78179 -20.59991 -19.61845 -18.14362 -16.87462 -16.40010 -16.00119 -15.41013 -15.19870 -14.69707 -14.51381 -14.02804 -13.78907 -13.52190 -13.30579 -12.96865 -12.74146 -12.34976 -12.20602 -12.14846 -11.96585 -11.71805 -11.66254 -11.42936 -11.14038 -11.04514 -10.82111 -10.68041 -10.61325 -10.52847 -10.39417 -10.16631 -10.06553 -9.55042 -8.69631 -8.38666 -7.87470 -7.54390 -5.99259 -4.03447 3.33788 3.40261 3.43637 3.50809 3.79351 4.27199 4.50674 4.60280 4.68799 4.90563 5.08820 5.12929 5.15959 5.25077 5.28187 5.35280 5.42233 5.45595 5.58405 5.62538 5.74689 5.78314 5.83478 5.93042 5.95018 5.98383 5.99841 6.07221 6.09174 6.12313 6.21758 6.30362 6.30897 6.55545 7.06020 7.29596 7.41304 7.50724 7.62693 7.98048 8.29601 8.51396 8.97330 9.22291 9.61758 11.08797 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.004616 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.790359 B = 6064.510453 C = 6298.562399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.066 3.934 3 H 0.095 0.905 4 C 0.514 3.486 5 O -0.525 6.525 6 N -0.604 5.604 7 C 0.083 3.917 8 C 0.247 3.753 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.897 5.897 13 Si 0.897 3.103 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.527 5.527 18 C 0.064 3.936 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.160 4.160 23 C 0.061 3.939 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.743 5.643 -16.740 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.046 4.046 3 H 0.113 0.887 4 C 0.299 3.701 5 O -0.401 6.401 6 N -0.337 5.337 7 C -0.061 4.061 8 C 0.128 3.872 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.251 5.251 18 C -0.063 4.063 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.199 4.199 23 C -0.066 4.066 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.994 4.814 -16.542 19.434 hybrid contribution 0.180 0.527 0.119 0.569 sum -8.814 5.341 -16.423 19.389 Atomic orbital electron populations 1.22599 0.95926 1.03155 1.02141 1.21615 0.93792 0.98424 0.90762 0.88669 1.20075 0.79331 0.86871 0.83813 1.90623 1.45605 1.18956 1.84944 1.48131 1.61326 1.14897 1.09356 1.21670 0.97770 0.84609 1.02043 1.19252 0.94018 0.93719 0.80240 1.21451 0.94502 1.30383 1.09859 0.92467 1.24928 0.98507 0.94931 0.95752 1.69933 1.36422 1.32792 1.14437 0.86508 0.85071 0.77695 0.78221 1.20708 1.21123 1.19854 1.61574 1.57696 1.04122 1.01713 1.21773 0.99867 0.95085 0.89585 1.21418 0.97120 1.01535 0.95769 1.20586 0.96858 0.98575 0.99507 1.20575 1.00519 0.98586 0.95954 1.22365 0.99463 1.02666 0.95381 1.21916 0.92107 0.90676 1.01935 0.91997 0.91299 0.91599 0.93881 0.90856 0.92583 0.95168 0.93925 0.92797 0.95025 0.91372 0.90434 0.91307 0.92442 0.92552 0.92061 0.92772 0.91666 0.90800 0.91275 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 7.39 37.16 0.27 -1.99 16 2 C 0.07 1.04 1.89 -68.87 -0.13 0.91 16 3 H 0.10 1.37 6.30 -51.93 -0.33 1.04 16 4 C 0.51 10.89 6.71 -10.98 -0.07 10.82 16 5 O -0.53 -13.41 13.99 5.56 0.08 -13.33 16 6 N -0.60 -13.01 2.86 -182.95 -0.52 -13.54 16 7 C 0.08 1.33 9.36 59.85 0.56 1.90 16 8 C 0.25 6.57 5.16 -5.19 -0.03 6.55 16 9 C -0.52 -15.15 9.39 -34.44 -0.32 -15.47 16 10 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 13 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 17 N -0.53 -8.08 4.42 -229.31 -1.01 -9.09 16 18 C 0.06 0.76 4.81 -4.49 -0.02 0.74 16 19 C -0.12 -1.25 5.63 -27.32 -0.15 -1.40 16 20 C -0.12 -1.07 5.30 -29.42 -0.16 -1.23 16 21 C -0.12 -1.17 5.30 -29.42 -0.16 -1.32 16 22 C -0.16 -1.82 4.23 -27.33 -0.12 -1.94 16 23 C 0.06 0.90 4.12 -4.49 -0.02 0.88 16 24 H 0.06 0.65 5.72 -51.93 -0.30 0.36 16 25 H 0.07 0.93 5.74 -51.93 -0.30 0.63 16 26 H 0.07 0.78 6.50 -51.93 -0.34 0.45 16 27 H 0.04 0.59 7.47 -51.93 -0.39 0.20 16 28 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.06 0.74 6.01 -51.93 -0.31 0.43 16 30 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.03 0.34 5.39 -51.93 -0.28 0.06 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.92 7.08 -51.93 -0.37 0.55 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 39 H 0.06 0.62 7.52 -51.93 -0.39 0.23 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.82 4.06 -51.93 -0.21 0.61 16 43 H 0.07 1.04 6.59 -51.93 -0.34 0.70 16 44 H 0.09 1.57 5.47 -51.93 -0.28 1.29 16 LS Contribution 321.93 15.07 4.85 4.85 Total: -1.00 -32.91 321.93 -8.44 -41.34 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.11 Total: -1.31 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -0.44 Total: 0.11 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.80 Total: -48.93 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.91 -8.44 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078633708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.194 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds