Wall clock time and date at job start Mon Mar 30 2020 19:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21274 * 120.00042 * 2 1 4 4 N 1.34777 * 119.99766 * 180.27536 * 2 1 3 5 5 C 1.46496 * 120.00266 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47519 * 275.00721 * 5 4 2 7 7 C 1.52996 * 109.47359 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47346 * 59.99730 * 7 6 5 9 9 N 1.46896 * 109.46958 * 180.02562 * 8 7 6 10 10 C 1.46896 * 111.00412 * 58.95387 * 9 8 7 11 11 C 1.46906 * 111.00028 * 294.99587 * 9 8 7 12 12 C 1.52993 * 109.47203 * 190.00365 * 11 9 8 13 13 C 1.50697 * 109.47262 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99649 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00424 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99906 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00225 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47021 * 60.00025 * 17 15 13 19 19 H 1.48500 * 109.47295 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47287 * 300.00004 * 17 15 13 21 21 C 1.52999 * 109.46786 * 300.00230 * 8 7 6 22 22 C 1.52995 * 109.47468 * 155.00186 * 5 4 2 23 23 H 1.09001 * 109.46740 * 239.72344 * 1 2 3 24 24 H 1.09001 * 109.46949 * 359.71872 * 1 2 3 25 25 H 1.09000 * 109.47161 * 119.72201 * 1 2 3 26 26 H 0.96999 * 120.00043 * 0.02562 * 4 2 1 27 27 H 1.09002 * 109.46908 * 35.00463 * 5 4 2 28 28 H 1.09002 * 109.46821 * 299.99796 * 6 5 4 29 29 H 1.08998 * 109.47335 * 59.98987 * 6 5 4 30 30 H 1.09002 * 109.47071 * 299.99744 * 7 6 5 31 31 H 1.08997 * 109.47363 * 180.02562 * 7 6 5 32 32 H 1.08995 * 109.46691 * 60.00023 * 8 7 6 33 33 H 1.08994 * 109.47374 * 59.99767 * 10 9 8 34 34 H 1.08999 * 109.47107 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.47163 * 299.99686 * 10 9 8 36 36 H 1.09000 * 109.46867 * 310.00793 * 11 9 8 37 37 H 1.08997 * 109.46550 * 70.00265 * 11 9 8 38 38 H 1.09000 * 109.47558 * 300.00004 * 12 11 9 39 39 H 1.09001 * 109.47386 * 59.99948 * 12 11 9 40 40 H 0.96995 * 120.00031 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.47140 * 299.99684 * 21 8 7 42 42 H 1.09006 * 109.46903 * 180.02562 * 21 8 7 43 43 H 1.09007 * 109.47250 * 300.00564 * 22 5 4 44 44 H 1.09002 * 109.46830 * 60.00230 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0056 5 6 3.6459 -1.1673 -0.0062 6 6 4.1554 -1.0349 -1.4427 7 6 5.6854 -1.0344 -1.4432 8 6 6.1961 -2.3443 -0.8397 9 7 7.6650 -2.3435 -0.8396 10 6 8.1909 -1.2092 -0.0684 11 6 8.1915 -2.3369 -2.2111 12 6 9.7006 -2.5867 -2.1792 13 6 10.2408 -2.5794 -3.5860 14 1 9.5743 -2.4135 -4.4195 15 6 11.5857 -2.7854 -3.8092 16 7 12.3972 -2.9879 -2.7943 17 14 12.2551 -2.7769 -5.5531 18 1 11.9852 -1.4583 -6.1805 19 1 13.7199 -3.0193 -5.5222 20 1 11.5926 -3.8458 -6.3429 21 6 5.6865 -2.4767 0.5969 22 6 4.1560 -2.4775 0.5972 23 1 -0.3633 -0.5181 0.8875 24 1 -0.3633 1.0277 0.0050 25 1 -0.3633 -0.5095 -0.8925 26 1 1.6959 -2.0072 -0.0100 27 1 4.0095 -0.3283 0.5871 28 1 3.7918 -1.8740 -2.0360 29 1 3.7919 -0.1016 -1.8726 30 1 6.0486 -0.1951 -0.8501 31 1 6.0484 -0.9396 -2.4666 32 1 5.8328 -3.1835 -1.4328 33 1 7.8414 -1.2771 0.9618 34 1 9.2805 -1.2330 -0.0844 35 1 7.8409 -0.2762 -0.5100 36 1 7.7054 -3.1217 -2.7906 37 1 7.9931 -1.3692 -2.6717 38 1 10.1867 -1.8020 -1.5997 39 1 9.8991 -3.5545 -1.7185 40 1 13.3433 -3.1332 -2.9513 41 1 6.0498 -1.6374 1.1900 42 1 6.0507 -3.4097 1.0271 43 1 3.7930 -2.5718 1.6207 44 1 3.7924 -3.3165 0.0039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344127061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:37:57 Heat of formation + Delta-G solvation = -57.623039 kcal Electronic energy + Delta-G solvation = -20945.891504 eV Core-core repulsion = 17897.096286 eV Total energy + Delta-G solvation = -3048.795219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25341 -38.88389 -36.23299 -33.83540 -32.75097 -30.90621 -30.56054 -29.42015 -27.57882 -25.92088 -23.82601 -22.86416 -21.58736 -20.69710 -20.02657 -19.08243 -17.07215 -16.65711 -16.44225 -15.55128 -15.24885 -14.69529 -14.49394 -14.24646 -14.09534 -13.80705 -13.59922 -13.17504 -12.86529 -12.66694 -12.37154 -12.28730 -12.06997 -12.01670 -11.47579 -11.40419 -11.12154 -11.05255 -10.93773 -10.81194 -10.52745 -10.37343 -10.22385 -10.05564 -9.75059 -9.31067 -9.21558 -9.09603 -8.30066 -7.60057 -5.97035 -3.99304 2.41967 2.98179 3.34892 3.39181 3.41550 4.37434 4.48135 4.56917 4.63030 4.71503 4.91859 5.01429 5.05379 5.16883 5.20505 5.37795 5.38642 5.41686 5.45612 5.53031 5.62544 5.77724 5.86465 5.93110 5.97499 6.02449 6.15057 6.16227 6.28332 6.32446 6.37591 6.44419 6.57915 6.62956 7.02166 7.27806 7.55629 7.63018 7.83935 7.94305 8.00983 8.12015 8.46845 9.07968 9.64060 11.14350 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038386 B = 0.003245 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.258700 B = 8626.290082 C = 8971.307436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.507 3.493 3 O -0.546 6.546 4 N -0.728 5.728 5 C 0.143 3.857 6 C -0.121 4.121 7 C -0.152 4.152 8 C 0.083 3.917 9 N -0.535 5.535 10 C 0.019 3.981 11 C 0.062 3.938 12 C 0.028 3.972 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.108 4.108 22 C -0.122 4.122 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.399 0.601 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.022 0.978 36 H 0.058 0.942 37 H 0.021 0.979 38 H 0.017 0.983 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.950 1.402 7.754 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.294 3.706 3 O -0.423 6.423 4 N -0.380 5.380 5 C 0.039 3.961 6 C -0.160 4.160 7 C -0.191 4.191 8 C -0.026 4.026 9 N -0.258 5.258 10 C -0.129 4.129 11 C -0.064 4.064 12 C -0.009 4.009 13 C -0.561 4.561 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.146 4.146 22 C -0.161 4.161 23 H 0.105 0.895 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.233 0.767 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.146 1.695 8.033 23.619 hybrid contribution -0.077 0.332 -1.448 1.488 sum -22.223 2.026 6.585 23.267 Atomic orbital electron populations 1.21928 0.91904 1.05470 1.04135 1.20823 0.90558 0.83664 0.75527 1.90739 1.70860 1.31430 1.49268 1.46188 1.07580 1.08589 1.75594 1.21068 0.78659 0.99210 0.97203 1.21819 0.96132 1.02037 0.96024 1.22215 0.94624 1.00022 1.02264 1.21754 0.88833 0.96287 0.95709 1.62331 1.04866 1.42574 1.15997 1.22459 1.01783 0.91458 0.97212 1.22332 0.99575 0.98554 0.85968 1.19091 0.87599 0.97636 0.96610 1.21168 0.93097 1.49057 0.92767 0.92920 1.24989 0.97114 0.95356 0.96847 1.69962 1.04126 1.49022 1.30173 0.86667 0.77792 0.78515 0.85060 1.20319 1.21284 1.20251 1.21554 0.92931 1.03064 0.97075 1.21791 0.96999 0.96392 1.00876 0.89511 0.89076 0.89453 0.76710 0.89564 0.91910 0.91880 0.91495 0.91223 0.90418 0.92385 0.90499 0.95981 0.92364 0.96039 0.96470 0.95820 0.92967 0.91590 0.90550 0.91422 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.32 36.01 0.37 -0.59 16 2 C 0.51 5.08 7.90 -10.98 -0.09 4.99 16 3 O -0.55 -8.22 16.75 5.56 0.09 -8.13 16 4 N -0.73 -6.01 5.08 -53.81 -0.27 -6.28 16 5 C 0.14 1.48 2.45 -67.94 -0.17 1.31 16 6 C -0.12 -1.42 5.49 -26.73 -0.15 -1.56 16 7 C -0.15 -2.08 4.51 -26.73 -0.12 -2.20 16 8 C 0.08 1.18 2.23 -67.71 -0.15 1.03 16 9 N -0.54 -9.61 4.75 -234.90 -1.12 -10.73 16 10 C 0.02 0.32 8.62 60.06 0.52 0.84 16 11 C 0.06 1.33 4.34 -3.82 -0.02 1.31 16 12 C 0.03 0.74 4.90 -27.89 -0.14 0.60 16 13 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 17 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.11 -1.25 5.00 -26.71 -0.13 -1.38 16 22 C -0.12 -1.09 5.39 -26.71 -0.14 -1.24 16 23 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.40 2.04 8.60 -40.82 -0.35 1.69 16 27 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.97 6.38 -51.93 -0.33 0.64 16 31 H 0.07 1.06 6.75 -51.93 -0.35 0.71 16 32 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 33 H 0.06 0.85 6.32 -51.93 -0.33 0.52 16 34 H 0.08 1.47 6.30 -51.93 -0.33 1.15 16 35 H 0.02 0.36 6.28 -51.93 -0.33 0.04 16 36 H 0.06 1.23 8.00 -51.93 -0.42 0.81 16 37 H 0.02 0.46 6.94 -51.93 -0.36 0.10 16 38 H 0.02 0.47 6.47 -51.93 -0.34 0.14 16 39 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.07 0.78 6.42 -51.93 -0.33 0.45 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -33.21 339.85 -8.70 -41.91 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.62 Total: -1.75 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.62 Total: -10.58 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -0.65 Total: -43.43 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.21 -8.70 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344127061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.713 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds