Wall clock time and date at job start Mon Mar 30 2020 19:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47099 * 321.48330 * 3 2 1 5 5 C 1.36973 * 120.00059 * 81.67231 * 4 3 2 6 6 H 1.08000 * 120.00159 * 181.67600 * 5 4 3 7 7 C 1.38969 * 119.99899 * 1.67455 * 5 4 3 8 8 N 1.31414 * 119.99990 * 326.70376 * 7 5 4 9 9 Si 1.86805 * 119.99719 * 146.70336 * 7 5 4 10 10 H 1.48499 * 109.47215 * 90.00455 * 9 7 5 11 11 H 1.48504 * 109.46682 * 209.99983 * 9 7 5 12 12 H 1.48491 * 109.47183 * 329.99869 * 9 7 5 13 13 C 1.34776 * 120.00315 * 261.67291 * 4 3 2 14 14 O 1.21669 * 120.00454 * 185.95860 * 13 4 3 15 15 C 1.47101 * 119.99820 * 5.95907 * 13 4 3 16 16 C 1.36071 * 123.46727 * 21.05229 * 15 13 4 17 17 S 1.70439 * 110.83572 * 179.97438 * 16 15 13 18 18 C 1.75499 * 92.46622 * 359.97438 * 17 16 15 19 19 Cl 1.73599 * 124.71206 * 180.02562 * 18 17 16 20 20 C 1.32882 * 110.57679 * 359.71225 * 18 17 16 21 21 H 4.40643 * 5.51402 * 179.97438 * 4 1 2 22 22 H 1.08999 * 109.47136 * 81.48258 * 3 2 1 23 23 H 1.08997 * 109.47073 * 201.48725 * 3 2 1 24 24 H 0.96999 * 120.00162 * 179.97438 * 8 7 5 25 25 H 1.07999 * 124.57746 * 0.02562 * 16 15 13 26 26 H 1.08006 * 123.47406 * 180.24499 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.0798 0.8601 5 6 3.2017 -2.3607 0.3796 6 1 3.5364 -3.1617 1.0220 7 6 2.8389 -2.6296 -0.9347 8 7 1.8813 -1.9352 -1.5072 9 14 3.7125 -3.9781 -1.8876 10 1 2.9998 -5.2657 -1.6892 11 1 3.7231 -3.6358 -3.3326 12 1 5.1089 -4.1047 -1.3986 13 6 3.5188 -0.8135 2.1243 14 8 4.0255 -1.6870 2.8031 15 6 3.3251 0.5332 2.6836 16 6 2.4284 1.4292 2.1890 17 16 2.4709 2.8829 3.0778 18 6 3.7252 2.2808 4.1475 19 17 4.4229 3.1807 5.4578 20 6 4.0618 1.0379 3.8193 21 1 -1.0498 -0.0001 0.0004 22 1 3.0095 -0.1514 -1.0163 23 1 3.0089 0.9570 0.3764 24 1 1.6282 -2.1226 -2.4246 25 1 1.7772 1.2439 1.3476 26 1 4.8121 0.4655 4.3447 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382216708.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:17 Heat of formation + Delta-G solvation = 84.637741 kcal Electronic energy + Delta-G solvation = -15713.531483 eV Core-core repulsion = 12913.316150 eV Total energy + Delta-G solvation = -2800.215333 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 269.002 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.29787 -37.01292 -35.93726 -35.34852 -32.44946 -31.48731 -29.27321 -26.54110 -25.50102 -23.63196 -20.87089 -19.03928 -18.13928 -17.28044 -16.69094 -16.21322 -14.99911 -14.42167 -14.29180 -14.09116 -13.75825 -13.38205 -12.90493 -12.49681 -12.23000 -11.90004 -11.83243 -11.29874 -11.15978 -10.85460 -10.66397 -10.57057 -10.36110 -9.53418 -9.39128 -8.99648 -8.62301 -8.50964 -8.15617 -8.08076 -6.60606 -3.87749 1.02619 1.29866 2.07612 2.36580 2.39739 3.08932 3.18273 3.27027 3.61625 3.78751 4.06151 4.13348 4.75682 4.96145 5.35598 5.38931 5.62614 5.74026 5.94693 6.12657 6.30166 6.48514 6.60682 6.85853 7.36712 7.87663 8.26037 8.64722 8.97293 9.17618 9.78308 10.37225 Molecular weight = 269.00amu Principal moments of inertia in cm(-1) A = 0.032030 B = 0.005813 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.959641 B = 4815.670072 C = 5499.895446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.118 4.118 3 C 0.208 3.792 4 N -0.417 5.417 5 C -0.318 4.318 6 H 0.114 0.886 7 C 0.041 3.959 8 N -0.833 5.833 9 Si 0.912 3.088 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.266 1.266 13 C 0.487 3.513 14 O -0.584 6.584 15 C -0.112 4.112 16 C -0.244 4.244 17 S 0.181 5.819 18 C -0.174 4.174 19 Cl -0.028 7.028 20 C -0.066 4.066 21 H 0.202 0.798 22 H 0.106 0.894 23 H 0.083 0.917 24 H 0.273 0.727 25 H 0.197 0.803 26 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 10.722 3.608 11.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.119 4.119 3 C 0.085 3.915 4 N -0.132 5.132 5 C -0.445 4.445 6 H 0.132 0.868 7 C -0.166 4.166 8 N -0.468 5.468 9 Si 0.737 3.263 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.190 1.190 13 C 0.276 3.724 14 O -0.470 6.470 15 C -0.129 4.129 16 C -0.382 4.382 17 S 0.444 5.556 18 C -0.317 4.317 19 Cl 0.001 6.999 20 C -0.099 4.099 21 H 0.219 0.781 22 H 0.124 0.876 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.213 0.787 26 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.701 11.717 3.748 12.321 hybrid contribution 0.711 -2.012 -0.507 2.194 sum 0.010 9.704 3.240 10.231 Atomic orbital electron populations 1.24341 0.95388 1.03195 1.03375 1.22789 0.94130 0.97450 0.97579 1.19003 0.84517 0.90246 0.97780 1.43717 1.52268 1.07809 1.09444 1.19697 1.43812 0.85196 0.95782 0.86838 1.25291 0.94884 0.99156 0.97286 1.70245 1.21016 1.41168 1.14397 0.86179 0.81060 0.80687 0.78389 1.20168 1.20597 1.19005 1.17017 0.86788 0.86365 0.82197 1.90634 1.49610 1.47586 1.59204 1.20386 0.98529 0.96586 0.97369 1.26797 1.06053 0.98314 1.07047 1.82819 1.34491 1.15236 1.23079 1.24965 1.07409 0.98222 1.01069 1.98333 1.82850 1.73646 1.45119 1.21201 1.00048 0.92657 0.95950 0.78083 0.87642 0.89942 0.91641 0.78688 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.76 19.25 29.55 0.57 -4.19 15 2 C -0.12 -2.50 8.68 -37.12 -0.32 -2.82 15 3 C 0.21 4.46 4.76 -6.83 -0.03 4.43 15 4 N -0.42 -10.40 2.61 -119.27 -0.31 -10.71 15 5 C -0.32 -8.53 9.33 -14.98 -0.14 -8.67 15 6 H 0.11 3.23 7.36 -52.49 -0.39 2.85 15 7 C 0.04 1.03 4.84 -17.46 -0.08 0.94 15 8 N -0.83 -20.47 9.16 55.50 0.51 -19.97 15 9 Si 0.91 19.49 29.66 -169.99 -5.04 14.45 15 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 11 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 13 C 0.49 12.08 7.53 -12.67 -0.10 11.98 15 14 O -0.58 -16.35 16.47 5.22 0.09 -16.26 15 15 C -0.11 -2.26 5.63 -104.62 -0.59 -2.85 15 16 C -0.24 -4.25 8.44 29.95 0.25 -4.00 15 17 S 0.18 2.53 23.02 -107.50 -2.47 0.05 15 18 C -0.17 -2.66 7.01 28.88 0.20 -2.46 15 19 Cl -0.03 -0.36 29.27 -51.86 -1.52 -1.88 15 20 C -0.07 -1.18 10.10 -38.97 -0.39 -1.57 15 21 H 0.20 3.16 7.80 -54.10 -0.42 2.74 15 22 H 0.11 2.35 6.48 -51.93 -0.34 2.01 15 23 H 0.08 1.54 4.80 -51.93 -0.25 1.29 15 24 H 0.27 6.35 8.31 -40.82 -0.34 6.01 15 25 H 0.20 3.47 3.22 -52.49 -0.17 3.31 15 26 H 0.16 2.74 8.06 -52.48 -0.42 2.32 15 LS Contribution 263.12 15.07 3.97 3.97 Total: -1.00 -28.84 263.12 -6.54 -35.38 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -1.12 Total: 4.17 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -0.63 Total: -9.21 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.20 Total: -30.67 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.09 Total: -16.26 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.04 Total: 14.45 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.47 Total: 0.05 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.52 Total: -1.88 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.84 -6.54 -35.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382216708.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.019 kcal (2) G-P(sol) polarization free energy of solvation -28.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds