Wall clock time and date at job start Mon Mar 30 2020 19:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47099 * 321.48330 * 3 2 1 5 5 C 1.36973 * 120.00059 * 81.67231 * 4 3 2 6 6 H 1.08000 * 120.00159 * 181.67600 * 5 4 3 7 7 C 1.38969 * 119.99899 * 1.67455 * 5 4 3 8 8 N 1.31414 * 119.99990 * 326.70376 * 7 5 4 9 9 Si 1.86805 * 119.99719 * 146.70336 * 7 5 4 10 10 H 1.48499 * 109.47215 * 90.00455 * 9 7 5 11 11 H 1.48504 * 109.46682 * 209.99983 * 9 7 5 12 12 H 1.48491 * 109.47183 * 329.99869 * 9 7 5 13 13 C 1.34776 * 120.00315 * 261.67291 * 4 3 2 14 14 O 1.21669 * 120.00454 * 185.95860 * 13 4 3 15 15 C 1.47101 * 119.99820 * 5.95907 * 13 4 3 16 16 C 1.36071 * 123.46727 * 21.05229 * 15 13 4 17 17 S 1.70439 * 110.83572 * 179.97438 * 16 15 13 18 18 C 1.75499 * 92.46622 * 359.97438 * 17 16 15 19 19 Cl 1.73599 * 124.71206 * 180.02562 * 18 17 16 20 20 C 1.32882 * 110.57679 * 359.71225 * 18 17 16 21 21 H 4.40643 * 5.51402 * 179.97438 * 4 1 2 22 22 H 1.08999 * 109.47136 * 81.48258 * 3 2 1 23 23 H 1.08997 * 109.47073 * 201.48725 * 3 2 1 24 24 H 0.96999 * 120.00162 * 179.97438 * 8 7 5 25 25 H 1.07999 * 124.57746 * 0.02562 * 16 15 13 26 26 H 1.08006 * 123.47406 * 180.24499 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.0798 0.8601 5 6 3.2017 -2.3607 0.3796 6 1 3.5364 -3.1617 1.0220 7 6 2.8389 -2.6296 -0.9347 8 7 1.8813 -1.9352 -1.5072 9 14 3.7125 -3.9781 -1.8876 10 1 2.9998 -5.2657 -1.6892 11 1 3.7231 -3.6358 -3.3326 12 1 5.1089 -4.1047 -1.3986 13 6 3.5188 -0.8135 2.1243 14 8 4.0255 -1.6870 2.8031 15 6 3.3251 0.5332 2.6836 16 6 2.4284 1.4292 2.1890 17 16 2.4709 2.8829 3.0778 18 6 3.7252 2.2808 4.1475 19 17 4.4229 3.1807 5.4578 20 6 4.0618 1.0379 3.8193 21 1 -1.0498 -0.0001 0.0004 22 1 3.0095 -0.1514 -1.0163 23 1 3.0089 0.9570 0.3764 24 1 1.6282 -2.1226 -2.4246 25 1 1.7772 1.2439 1.3476 26 1 4.8121 0.4655 4.3447 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382216708.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:17 Heat of formation + Delta-G solvation = 68.066436 kcal Electronic energy + Delta-G solvation = -15714.250069 eV Core-core repulsion = 12913.316150 eV Total energy + Delta-G solvation = -2800.933918 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 269.002 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.02511 -38.32060 -37.33799 -37.19935 -34.23276 -33.23772 -30.73334 -28.23821 -27.28781 -25.18258 -22.45197 -20.55183 -19.87074 -18.71875 -18.38390 -17.89116 -16.73489 -16.09749 -16.01740 -15.63096 -15.28736 -14.72991 -14.58125 -14.16775 -13.74931 -13.68646 -13.32060 -12.82919 -12.59929 -12.49515 -12.29772 -12.12478 -11.76683 -11.21321 -11.11988 -10.73356 -10.47118 -10.07440 -9.81237 -9.39248 -8.49212 -5.87286 -0.34698 0.05831 0.74007 0.86666 1.15069 1.37249 1.42426 1.55210 1.97969 2.17641 2.32496 2.34132 2.92559 3.20610 3.81057 3.97977 4.04915 4.31397 4.48328 4.61043 4.85553 4.87669 5.07951 5.34759 5.40963 5.94122 6.35389 7.04470 7.07295 7.29552 7.90259 8.47174 Molecular weight = 269.00amu Principal moments of inertia in cm(-1) A = 0.032030 B = 0.005813 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.959641 B = 4815.670072 C = 5499.895446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.159 4.159 3 C 0.213 3.787 4 N -0.428 5.428 5 C -0.367 4.367 6 H 0.079 0.921 7 C 0.021 3.979 8 N -0.838 5.838 9 Si 0.973 3.027 10 H -0.275 1.275 11 H -0.262 1.262 12 H -0.277 1.277 13 C 0.475 3.525 14 O -0.634 6.634 15 C -0.142 4.142 16 C -0.244 4.244 17 S 0.291 5.709 18 C -0.173 4.173 19 Cl -0.002 7.002 20 C -0.087 4.087 21 H 0.238 0.762 22 H 0.091 0.909 23 H 0.107 0.893 24 H 0.280 0.720 25 H 0.195 0.805 26 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 13.089 3.228 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.160 4.160 3 C 0.091 3.909 4 N -0.143 5.143 5 C -0.494 4.494 6 H 0.097 0.903 7 C -0.186 4.186 8 N -0.472 5.472 9 Si 0.796 3.204 10 H -0.200 1.200 11 H -0.186 1.186 12 H -0.202 1.202 13 C 0.266 3.734 14 O -0.524 6.524 15 C -0.159 4.159 16 C -0.383 4.383 17 S 0.555 5.445 18 C -0.316 4.316 19 Cl 0.026 6.974 20 C -0.119 4.119 21 H 0.254 0.746 22 H 0.109 0.891 23 H 0.125 0.875 24 H 0.090 0.910 25 H 0.212 0.788 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.959 14.128 3.343 14.650 hybrid contribution 1.003 -2.562 -0.310 2.769 sum -0.956 11.565 3.033 11.995 Atomic orbital electron populations 1.25215 0.96283 1.01245 1.01447 1.22918 0.94539 0.99216 0.99346 1.19015 0.85262 0.90182 0.96488 1.43832 1.52492 1.07963 1.09975 1.19493 1.47179 0.85816 0.96908 0.90314 1.25875 0.94644 1.01206 0.96923 1.70283 1.20539 1.41652 1.14682 0.85284 0.79111 0.78260 0.77721 1.20034 1.18638 1.20183 1.17771 0.85702 0.87933 0.81993 1.90566 1.51611 1.49748 1.60519 1.20032 1.01301 0.95243 0.99362 1.26884 1.04487 0.99878 1.07014 1.82481 1.31471 1.10857 1.19685 1.25146 1.07219 0.97716 1.01482 1.98349 1.82551 1.72610 1.43847 1.21024 1.00902 0.93881 0.96113 0.74578 0.89087 0.87523 0.90970 0.78840 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.24 19.25 74.32 1.43 -6.81 15 2 C -0.16 -6.62 8.68 31.13 0.27 -6.35 15 3 C 0.21 9.25 4.76 84.57 0.40 9.66 15 4 N -0.43 -22.29 2.61 -649.48 -1.69 -23.99 15 5 C -0.37 -20.77 9.33 84.07 0.78 -19.98 15 6 H 0.08 4.87 7.36 -2.91 -0.02 4.85 15 7 C 0.02 1.07 4.84 84.93 0.41 1.48 15 8 N -0.84 -41.08 9.16 21.67 0.20 -40.88 15 9 Si 0.97 40.69 29.66 68.60 2.03 42.72 15 10 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 11 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 12 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 13 C 0.48 24.81 7.53 86.57 0.65 25.46 15 14 O -0.63 -38.05 16.47 -4.25 -0.07 -38.12 15 15 C -0.14 -5.80 5.63 -19.87 -0.11 -5.91 15 16 C -0.24 -8.13 8.44 67.32 0.57 -7.56 15 17 S 0.29 7.07 23.02 -56.49 -1.30 5.77 15 18 C -0.17 -4.88 7.01 66.64 0.47 -4.41 15 19 Cl 0.00 -0.05 29.27 -2.72 -0.08 -0.13 15 20 C -0.09 -3.10 10.10 22.69 0.23 -2.87 15 21 H 0.24 6.57 7.80 -4.43 -0.03 6.54 15 22 H 0.09 4.14 6.48 -2.39 -0.02 4.12 15 23 H 0.11 3.96 4.80 -2.39 -0.01 3.95 15 24 H 0.28 12.74 8.31 -92.71 -0.77 11.97 15 25 H 0.20 6.59 3.22 -2.91 -0.01 6.58 15 26 H 0.15 5.36 8.06 -2.91 -0.02 5.34 15 Total: -1.00 -65.38 263.12 5.43 -59.96 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.23 Total: 11.97 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 5.10 Total: -17.30 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -1.50 Total: -64.87 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.07 Total: -38.12 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 7.07 SS G_CDS: -1.30 Total: 5.77 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.13 kcal Total: -65.38 5.43 -59.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382216708.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.023 kcal (2) G-P(sol) polarization free energy of solvation -65.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds