Wall clock time and date at job start Mon Mar 30 2020 19:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46959 * 2 1 4 4 C 1.46900 * 110.99874 * 199.82506 * 3 2 1 5 5 C 1.50697 * 109.47187 * 66.05057 * 4 3 2 6 6 H 1.08001 * 120.00049 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00121 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99950 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99957 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47369 * 89.99734 * 9 7 5 11 11 H 1.48498 * 109.46946 * 209.99889 * 9 7 5 12 12 H 1.48505 * 109.47031 * 329.99409 * 9 7 5 13 13 C 1.46905 * 110.99836 * 75.87305 * 3 2 1 14 14 C 1.52998 * 109.47060 * 199.70030 * 13 3 2 15 15 N 1.46897 * 109.46788 * 175.45111 * 14 13 3 16 16 C 1.46840 * 111.00669 * 294.21353 * 15 14 13 17 17 C 1.53037 * 109.52759 * 174.16227 * 16 15 14 18 18 H 1.09001 * 109.49962 * 299.24031 * 17 16 15 19 19 C 1.52996 * 109.50261 * 179.12013 * 17 16 15 20 20 C 1.53119 * 109.28028 * 59.17860 * 17 16 15 21 21 C 1.53126 * 109.15736 * 302.34939 * 20 17 16 22 22 H 1.08997 * 109.50003 * 177.59644 * 21 20 17 23 23 C 1.52995 * 109.50198 * 297.70906 * 21 20 17 24 24 C 1.46855 * 110.99948 * 170.00227 * 15 14 13 25 25 H 1.09008 * 109.46776 * 294.83467 * 1 2 3 26 26 H 1.08997 * 109.47213 * 54.82880 * 1 2 3 27 27 H 1.08992 * 109.47140 * 174.83811 * 1 2 3 28 28 H 1.08998 * 109.46879 * 240.00623 * 2 1 3 29 29 H 1.08992 * 109.47476 * 120.00591 * 2 1 3 30 30 H 1.09000 * 109.47381 * 186.05253 * 4 3 2 31 31 H 1.09008 * 109.47025 * 306.04991 * 4 3 2 32 32 H 0.96997 * 120.00116 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47024 * 79.70293 * 13 3 2 34 34 H 1.08998 * 109.46995 * 319.70666 * 13 3 2 35 35 H 1.08996 * 109.47080 * 295.45613 * 14 13 3 36 36 H 1.09001 * 109.46963 * 55.45598 * 14 13 3 37 37 H 1.09002 * 109.46167 * 294.17731 * 16 15 14 38 38 H 1.08998 * 109.46351 * 54.14232 * 16 15 14 39 39 H 1.08998 * 109.47579 * 300.19243 * 19 17 16 40 40 H 1.09004 * 109.47439 * 60.19997 * 19 17 16 41 41 H 1.09003 * 109.46765 * 180.19549 * 19 17 16 42 42 H 1.08999 * 109.52566 * 182.43992 * 20 17 16 43 43 H 1.08998 * 109.57232 * 62.28041 * 20 17 16 44 44 H 1.08998 * 109.47021 * 179.80720 * 23 21 20 45 45 H 1.09003 * 109.47241 * 299.80886 * 23 21 20 46 46 H 1.09005 * 109.47360 * 59.80806 * 23 21 20 47 47 H 1.09007 * 109.46065 * 305.86075 * 24 15 14 48 48 H 1.08992 * 109.46045 * 65.82996 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4115 1.4513 -0.4651 5 6 3.4761 1.0483 -1.9158 6 1 2.5734 0.7711 -2.4399 7 6 4.6875 1.0345 -2.5742 8 7 4.7439 0.6823 -3.8400 9 14 6.2487 1.5147 -1.6678 10 1 6.8530 0.3076 -1.0489 11 1 7.2120 2.1151 -2.6252 12 1 5.9221 2.5032 -0.6088 13 6 1.8795 1.9929 1.3300 14 6 1.9209 3.5169 1.2011 15 7 1.6721 4.1262 2.5144 16 6 0.3060 3.8461 2.9743 17 6 0.1296 4.3688 4.4018 18 1 0.8336 3.8643 5.0636 19 6 -1.3004 4.0963 4.8725 20 6 0.3968 5.8764 4.4248 21 6 1.8085 6.1446 3.8957 22 1 1.9892 7.2192 3.8696 23 6 2.8336 5.4757 4.8135 24 6 1.9361 5.5705 2.4830 25 1 -0.3633 0.4317 0.9327 26 1 -0.3633 0.5919 -0.8400 27 1 -0.3633 -1.0234 -0.0925 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8898 30 1 3.7836 2.4698 -0.3540 31 1 4.0255 0.7735 0.1280 32 1 5.5960 0.6730 -4.3033 33 1 2.6971 1.6601 1.9696 34 1 0.9287 1.6910 1.7691 35 1 2.9014 3.8243 0.8377 36 1 1.1542 3.8430 0.4982 37 1 -0.4076 4.3410 2.3156 38 1 0.1303 2.7705 2.9571 39 1 -2.0035 4.5998 4.2090 40 1 -1.4901 3.0230 4.8560 41 1 -1.4264 4.4719 5.8880 42 1 0.3147 6.2453 5.4472 43 1 -0.3315 6.3860 3.7941 44 1 3.8381 5.6641 4.4345 45 1 2.7422 5.8850 5.8197 46 1 2.6510 4.4014 4.8404 47 1 2.9446 5.7473 2.1088 48 1 1.2148 6.0573 1.8266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595331663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:39 Heat of formation + Delta-G solvation = -11.290233 kcal Electronic energy + Delta-G solvation = -21844.070468 eV Core-core repulsion = 18933.117485 eV Total energy + Delta-G solvation = -2910.952983 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.63510 -37.19309 -34.45913 -33.22593 -32.51002 -30.46900 -28.88667 -26.83169 -26.76350 -26.22286 -23.76053 -22.12672 -21.50059 -21.12996 -19.53085 -18.73422 -16.85324 -16.03507 -15.41253 -14.97029 -14.74282 -14.57648 -14.19156 -14.05942 -13.91706 -13.42033 -13.14586 -13.00440 -12.77200 -12.54476 -12.28443 -12.16963 -11.97085 -11.78919 -11.50457 -11.40931 -11.22202 -11.10216 -10.96614 -10.71462 -10.70620 -10.55215 -10.38413 -10.28500 -10.03299 -9.78299 -9.73949 -9.20342 -8.55610 -8.13467 -7.34506 -6.03532 -4.00269 3.29793 3.37444 3.40395 3.92130 4.43953 4.58887 4.69099 4.75290 4.94672 5.01945 5.18688 5.28731 5.31913 5.38492 5.46410 5.52277 5.59090 5.61590 5.64340 5.67374 5.70848 5.76714 5.84861 5.88263 5.96289 5.97481 6.01641 6.06971 6.08221 6.11214 6.21271 6.23662 6.27073 6.38265 6.46276 6.49547 6.70157 6.74367 6.95514 7.02921 7.26037 7.26511 7.65474 7.98015 8.11646 8.69239 9.05567 9.58858 11.09655 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.004801 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.830590 B = 5830.714127 C = 6831.933071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 N -0.529 5.529 4 C 0.162 3.838 5 C -0.508 4.508 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.059 3.941 14 C 0.063 3.937 15 N -0.537 5.537 16 C 0.059 3.941 17 C -0.091 4.091 18 H 0.080 0.920 19 C -0.146 4.146 20 C -0.110 4.110 21 C -0.089 4.089 22 H 0.068 0.932 23 C -0.139 4.139 24 C 0.061 3.939 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.018 0.982 30 H 0.029 0.971 31 H -0.017 1.017 32 H 0.263 0.737 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.043 0.957 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.087 8.497 17.769 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 N -0.254 5.254 4 C 0.035 3.965 5 C -0.546 4.546 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.701 3.299 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.070 4.070 14 C -0.065 4.065 15 N -0.262 5.262 16 C -0.069 4.069 17 C -0.110 4.110 18 H 0.098 0.902 19 C -0.204 4.204 20 C -0.148 4.148 21 C -0.107 4.107 22 H 0.087 0.913 23 C -0.196 4.196 24 C -0.067 4.067 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.000 1.000 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.914 8.527 17.605 21.496 hybrid contribution 0.911 0.186 0.277 0.970 sum -8.002 8.713 17.881 21.441 Atomic orbital electron populations 1.21771 0.96485 1.00430 1.01247 1.21985 0.94394 0.89739 1.01095 1.61886 1.23833 1.17418 1.22220 1.20210 0.83853 0.96016 0.96388 1.21063 0.95355 1.44746 0.93479 0.90134 1.24893 0.98705 0.94971 0.94729 1.69892 1.25834 1.48730 1.09589 0.86882 0.83751 0.79293 0.79952 1.20365 1.21213 1.19145 1.22018 1.00102 0.93710 0.91187 1.22044 1.01633 0.94882 0.87910 1.61812 1.25002 1.11408 1.27951 1.22170 0.88923 1.00915 0.94881 1.21210 0.96930 0.95951 0.96890 0.90180 1.21797 0.96190 1.01591 1.00820 1.21671 0.96372 0.95976 1.00741 1.21160 0.95438 0.99080 0.95062 0.91315 1.21750 0.98069 1.02136 0.97659 1.22076 1.00945 0.87771 0.95920 0.94068 0.92066 0.93289 0.89137 0.96415 0.95351 0.99980 0.92714 0.95109 0.91873 0.90650 0.94020 0.95146 0.90582 0.92894 0.92582 0.92716 0.92105 0.92440 0.93138 0.93781 0.91075 0.90807 0.95124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.96 37.16 0.37 -1.89 16 2 C 0.06 1.08 5.51 -3.82 -0.02 1.06 16 3 N -0.53 -11.09 4.36 -236.07 -1.03 -12.12 16 4 C 0.16 3.95 3.62 -4.98 -0.02 3.93 16 5 C -0.51 -14.45 8.78 -34.44 -0.30 -14.75 16 6 H 0.08 2.49 7.56 -52.49 -0.40 2.09 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 9 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 13 C 0.06 1.03 4.84 -3.82 -0.02 1.01 16 14 C 0.06 1.03 5.00 -3.83 -0.02 1.02 16 15 N -0.54 -7.34 3.94 -234.68 -0.92 -8.26 16 16 C 0.06 0.71 4.58 -3.84 -0.02 0.69 16 17 C -0.09 -0.91 2.53 -90.54 -0.23 -1.14 16 18 H 0.08 0.85 6.58 -51.93 -0.34 0.51 16 19 C -0.15 -1.23 9.20 37.16 0.34 -0.89 16 20 C -0.11 -1.03 4.79 -26.60 -0.13 -1.16 16 21 C -0.09 -0.90 3.21 -90.54 -0.29 -1.19 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 C -0.14 -1.43 8.75 37.16 0.33 -1.11 16 24 C 0.06 0.75 4.90 -3.83 -0.02 0.73 16 25 H 0.04 0.59 6.90 -51.92 -0.36 0.23 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.99 6.58 -51.93 -0.34 1.65 16 29 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 30 H 0.03 0.71 5.76 -51.93 -0.30 0.41 16 31 H -0.02 -0.43 7.55 -51.92 -0.39 -0.83 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 34 H 0.06 1.00 4.66 -51.93 -0.24 0.76 16 35 H 0.08 1.36 6.78 -51.93 -0.35 1.01 16 36 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.95 6.13 -51.93 -0.32 0.63 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.83 6.01 -51.93 -0.31 0.51 16 47 H 0.07 0.94 8.02 -51.93 -0.42 0.52 16 48 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -29.47 354.26 -9.90 -39.36 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -9.26 Total: -2.65 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.12 Total: -11.80 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -1.18 Total: -47.30 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.47 -9.90 -39.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595331663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.072 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds