Wall clock time and date at job start Mon Mar 30 2020 19:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46959 * 2 1 4 4 C 1.46900 * 110.99874 * 199.82506 * 3 2 1 5 5 C 1.50697 * 109.47187 * 66.05057 * 4 3 2 6 6 H 1.08001 * 120.00049 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00121 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99950 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99957 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47369 * 89.99734 * 9 7 5 11 11 H 1.48498 * 109.46946 * 209.99889 * 9 7 5 12 12 H 1.48505 * 109.47031 * 329.99409 * 9 7 5 13 13 C 1.46905 * 110.99836 * 75.87305 * 3 2 1 14 14 C 1.52998 * 109.47060 * 199.70030 * 13 3 2 15 15 N 1.46897 * 109.46788 * 175.45111 * 14 13 3 16 16 C 1.46840 * 111.00669 * 294.21353 * 15 14 13 17 17 C 1.53037 * 109.52759 * 174.16227 * 16 15 14 18 18 H 1.09001 * 109.49962 * 299.24031 * 17 16 15 19 19 C 1.52996 * 109.50261 * 179.12013 * 17 16 15 20 20 C 1.53119 * 109.28028 * 59.17860 * 17 16 15 21 21 C 1.53126 * 109.15736 * 302.34939 * 20 17 16 22 22 H 1.08997 * 109.50003 * 177.59644 * 21 20 17 23 23 C 1.52995 * 109.50198 * 297.70906 * 21 20 17 24 24 C 1.46855 * 110.99948 * 170.00227 * 15 14 13 25 25 H 1.09008 * 109.46776 * 294.83467 * 1 2 3 26 26 H 1.08997 * 109.47213 * 54.82880 * 1 2 3 27 27 H 1.08992 * 109.47140 * 174.83811 * 1 2 3 28 28 H 1.08998 * 109.46879 * 240.00623 * 2 1 3 29 29 H 1.08992 * 109.47476 * 120.00591 * 2 1 3 30 30 H 1.09000 * 109.47381 * 186.05253 * 4 3 2 31 31 H 1.09008 * 109.47025 * 306.04991 * 4 3 2 32 32 H 0.96997 * 120.00116 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47024 * 79.70293 * 13 3 2 34 34 H 1.08998 * 109.46995 * 319.70666 * 13 3 2 35 35 H 1.08996 * 109.47080 * 295.45613 * 14 13 3 36 36 H 1.09001 * 109.46963 * 55.45598 * 14 13 3 37 37 H 1.09002 * 109.46167 * 294.17731 * 16 15 14 38 38 H 1.08998 * 109.46351 * 54.14232 * 16 15 14 39 39 H 1.08998 * 109.47579 * 300.19243 * 19 17 16 40 40 H 1.09004 * 109.47439 * 60.19997 * 19 17 16 41 41 H 1.09003 * 109.46765 * 180.19549 * 19 17 16 42 42 H 1.08999 * 109.52566 * 182.43992 * 20 17 16 43 43 H 1.08998 * 109.57232 * 62.28041 * 20 17 16 44 44 H 1.08998 * 109.47021 * 179.80720 * 23 21 20 45 45 H 1.09003 * 109.47241 * 299.80886 * 23 21 20 46 46 H 1.09005 * 109.47360 * 59.80806 * 23 21 20 47 47 H 1.09007 * 109.46065 * 305.86075 * 24 15 14 48 48 H 1.08992 * 109.46045 * 65.82996 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4115 1.4513 -0.4651 5 6 3.4761 1.0483 -1.9158 6 1 2.5734 0.7711 -2.4399 7 6 4.6875 1.0345 -2.5742 8 7 4.7439 0.6823 -3.8400 9 14 6.2487 1.5147 -1.6678 10 1 6.8530 0.3076 -1.0489 11 1 7.2120 2.1151 -2.6252 12 1 5.9221 2.5032 -0.6088 13 6 1.8795 1.9929 1.3300 14 6 1.9209 3.5169 1.2011 15 7 1.6721 4.1262 2.5144 16 6 0.3060 3.8461 2.9743 17 6 0.1296 4.3688 4.4018 18 1 0.8336 3.8643 5.0636 19 6 -1.3004 4.0963 4.8725 20 6 0.3968 5.8764 4.4248 21 6 1.8085 6.1446 3.8957 22 1 1.9892 7.2192 3.8696 23 6 2.8336 5.4757 4.8135 24 6 1.9361 5.5705 2.4830 25 1 -0.3633 0.4317 0.9327 26 1 -0.3633 0.5919 -0.8400 27 1 -0.3633 -1.0234 -0.0925 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8898 30 1 3.7836 2.4698 -0.3540 31 1 4.0255 0.7735 0.1280 32 1 5.5960 0.6730 -4.3033 33 1 2.6971 1.6601 1.9696 34 1 0.9287 1.6910 1.7691 35 1 2.9014 3.8243 0.8377 36 1 1.1542 3.8430 0.4982 37 1 -0.4076 4.3410 2.3156 38 1 0.1303 2.7705 2.9571 39 1 -2.0035 4.5998 4.2090 40 1 -1.4901 3.0230 4.8560 41 1 -1.4264 4.4719 5.8880 42 1 0.3147 6.2453 5.4472 43 1 -0.3315 6.3860 3.7941 44 1 3.8381 5.6641 4.4345 45 1 2.7422 5.8850 5.8197 46 1 2.6510 4.4014 4.8404 47 1 2.9446 5.7473 2.1088 48 1 1.2148 6.0573 1.8266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595331663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:39 Heat of formation + Delta-G solvation = -29.420164 kcal Electronic energy + Delta-G solvation = -21844.856641 eV Core-core repulsion = 18933.117485 eV Total energy + Delta-G solvation = -2911.739156 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.61284 -38.75836 -35.59524 -34.66578 -34.02846 -31.98119 -30.57052 -27.96330 -27.70502 -27.39595 -24.99548 -23.96800 -22.53526 -22.26388 -21.14659 -19.59275 -19.00538 -17.16631 -16.87934 -16.29025 -16.14570 -15.66361 -15.50426 -15.36487 -14.90271 -14.88370 -14.57436 -14.36994 -14.22777 -13.87441 -13.67028 -13.14112 -13.00666 -12.82152 -12.76754 -12.66046 -12.57688 -12.40484 -12.31726 -12.25119 -11.90619 -11.83221 -11.78592 -11.40880 -11.36326 -11.31549 -11.11614 -10.87683 -10.78496 -9.24753 -9.03059 -8.28943 -6.31379 1.32757 1.34320 1.45377 2.33246 2.75253 3.04301 3.43223 3.78567 3.80818 3.98392 4.05200 4.17018 4.23906 4.31582 4.35292 4.47294 4.53322 4.59947 4.63574 4.67600 4.71415 4.77151 4.81128 4.83255 4.87567 4.89660 4.94789 4.96918 5.00867 5.04402 5.08165 5.13075 5.19889 5.24531 5.27398 5.33957 5.41074 5.44113 5.47431 5.55953 5.66882 5.98006 6.14214 6.22002 6.40410 6.67717 6.75030 7.32106 8.87720 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.004801 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.830590 B = 5830.714127 C = 6831.933071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.054 3.946 3 N -0.543 5.543 4 C 0.174 3.826 5 C -0.513 4.513 6 H 0.039 0.961 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.943 3.057 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.252 1.252 13 C 0.066 3.934 14 C 0.072 3.928 15 N -0.537 5.537 16 C 0.058 3.942 17 C -0.086 4.086 18 H 0.076 0.924 19 C -0.142 4.142 20 C -0.107 4.107 21 C -0.085 4.085 22 H 0.083 0.917 23 C -0.135 4.135 24 C 0.058 3.942 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.031 0.969 30 H 0.028 0.972 31 H -0.019 1.019 32 H 0.267 0.733 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.029 0.971 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.456 9.495 20.699 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.073 4.073 3 N -0.267 5.267 4 C 0.047 3.953 5 C -0.552 4.552 6 H 0.057 0.943 7 C -0.187 4.187 8 N -0.588 5.588 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.176 1.176 13 C -0.062 4.062 14 C -0.056 4.056 15 N -0.262 5.262 16 C -0.070 4.070 17 C -0.105 4.105 18 H 0.094 0.906 19 C -0.200 4.200 20 C -0.145 4.145 21 C -0.104 4.104 22 H 0.101 0.899 23 C -0.192 4.192 24 C -0.070 4.070 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.046 0.954 31 H -0.001 1.001 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.307 9.530 20.557 24.495 hybrid contribution 0.935 -0.149 -0.669 1.159 sum -8.372 9.381 19.888 23.529 Atomic orbital electron populations 1.21675 0.93571 1.01841 1.01721 1.21997 0.96769 0.88695 0.99888 1.61836 1.21593 1.18686 1.24620 1.19934 0.86105 0.95446 0.93848 1.21262 0.94053 1.44404 0.95459 0.94254 1.25786 1.02491 0.94896 0.95494 1.70039 1.27015 1.50274 1.11470 0.85777 0.79042 0.79540 0.78974 1.19315 1.20534 1.17622 1.22020 1.00971 0.94088 0.89146 1.21833 1.00141 0.94359 0.89266 1.61836 1.26239 1.12264 1.25851 1.22245 0.87690 1.00788 0.96230 1.21177 0.97934 0.96280 0.95108 0.90556 1.21766 0.94934 1.01786 1.01529 1.21667 0.95628 0.95491 1.01692 1.21167 0.96120 0.99678 0.93410 0.89920 1.21705 0.97680 1.01296 0.98557 1.22156 1.00340 0.86930 0.97582 0.91932 0.93502 0.91099 0.92774 0.95098 0.95447 1.00121 0.92436 0.95490 0.89739 0.92622 0.95240 0.95600 0.90934 0.92814 0.92494 0.91386 0.90425 0.92337 0.93814 0.92151 0.92451 0.91692 0.95413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 9.96 71.98 0.72 -3.28 16 2 C 0.05 2.11 5.51 86.30 0.48 2.58 16 3 N -0.54 -22.83 4.36 -900.78 -3.92 -26.76 16 4 C 0.17 8.57 3.62 85.56 0.31 8.88 16 5 C -0.51 -30.19 8.78 25.60 0.22 -29.97 16 6 H 0.04 2.57 7.56 -2.91 -0.02 2.55 16 7 C 0.01 0.63 5.47 84.66 0.46 1.09 16 8 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 9 Si 0.94 44.97 27.47 68.60 1.88 46.86 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 13 C 0.07 2.25 4.84 86.30 0.42 2.67 16 14 C 0.07 2.35 5.00 86.30 0.43 2.79 16 15 N -0.54 -14.10 3.94 -896.39 -3.53 -17.63 16 16 C 0.06 1.30 4.58 86.33 0.40 1.70 16 17 C -0.09 -1.50 2.53 -10.74 -0.03 -1.53 16 18 H 0.08 1.43 6.58 -2.39 -0.02 1.41 16 19 C -0.14 -2.00 9.20 71.98 0.66 -1.34 16 20 C -0.11 -1.71 4.79 30.68 0.15 -1.56 16 21 C -0.09 -1.54 3.21 -10.74 -0.03 -1.57 16 22 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 23 C -0.14 -2.49 8.75 71.98 0.63 -1.86 16 24 C 0.06 1.36 4.90 86.32 0.42 1.78 16 25 H 0.06 1.64 6.90 -2.38 -0.02 1.63 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 2.47 6.58 -2.39 -0.02 2.46 16 29 H 0.03 1.10 8.00 -2.39 -0.02 1.08 16 30 H 0.03 1.36 5.76 -2.39 -0.01 1.35 16 31 H -0.02 -0.93 7.55 -2.38 -0.02 -0.95 16 32 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.03 0.95 8.00 -2.38 -0.02 0.93 16 34 H 0.08 2.52 4.66 -2.39 -0.01 2.51 16 35 H 0.06 2.01 6.78 -2.39 -0.02 2.00 16 36 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 37 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 1.66 6.13 -2.39 -0.01 1.64 16 39 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 1.22 6.01 -2.38 -0.01 1.21 16 47 H 0.06 1.62 8.02 -2.38 -0.02 1.60 16 48 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -64.95 354.26 0.79 -64.16 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.83 Total: 12.55 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 5.23 Total: -19.63 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -7.16 Total: -103.93 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Total: -64.95 0.79 -64.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595331663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.738 kcal (2) G-P(sol) polarization free energy of solvation -64.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds