Wall clock time and date at job start Mon Mar 30 2020 19:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47193 * 2 1 4 4 C 1.53008 * 109.46948 * 240.00486 * 2 1 3 5 5 C 1.50704 * 109.47000 * 64.99933 * 4 2 1 6 6 H 1.08003 * 119.99932 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99774 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99855 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99958 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46979 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46995 * 119.99707 * 9 7 5 12 12 H 1.48491 * 109.47234 * 239.99939 * 9 7 5 13 13 C 1.52996 * 109.47233 * 120.00715 * 2 1 3 14 14 N 1.46906 * 109.47022 * 294.99846 * 13 2 1 15 15 C 1.46901 * 110.99793 * 293.95609 * 14 13 2 16 16 C 1.46898 * 110.99820 * 169.99926 * 14 13 2 17 17 C 1.53004 * 109.46619 * 189.99887 * 16 14 13 18 18 C 1.52999 * 109.46881 * 180.02562 * 17 16 14 19 19 N 1.46895 * 109.47465 * 179.97438 * 18 17 16 20 20 C 1.48532 * 110.99813 * 52.60451 * 19 18 17 21 21 C 1.54933 * 103.22917 * 159.72245 * 20 19 18 22 22 C 1.54591 * 102.92231 * 322.58823 * 21 20 19 23 23 C 1.47897 * 111.00645 * 170.00084 * 19 18 17 24 24 H 1.09000 * 109.46855 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46950 * 299.99333 * 1 2 3 26 26 H 1.09001 * 109.46768 * 59.99724 * 1 2 3 27 27 H 1.08994 * 109.46941 * 185.00043 * 4 2 1 28 28 H 1.08994 * 109.47170 * 305.00035 * 4 2 1 29 29 H 0.97001 * 119.99572 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47190 * 175.00021 * 13 2 1 31 31 H 1.09001 * 109.47349 * 54.99588 * 13 2 1 32 32 H 1.09002 * 109.47401 * 59.99808 * 15 14 13 33 33 H 1.09001 * 109.46874 * 299.99821 * 15 14 13 34 34 H 1.09004 * 109.46970 * 179.97438 * 15 14 13 35 35 H 1.08994 * 109.47410 * 309.99936 * 16 14 13 36 36 H 1.08999 * 109.47216 * 70.00266 * 16 14 13 37 37 H 1.08994 * 109.47270 * 300.00135 * 17 16 14 38 38 H 1.08999 * 109.47017 * 60.00257 * 17 16 14 39 39 H 1.09005 * 109.47573 * 300.00357 * 18 17 16 40 40 H 1.08999 * 109.47126 * 60.00273 * 18 17 16 41 41 H 1.09005 * 110.66828 * 278.15759 * 20 19 18 42 42 H 1.08999 * 110.67143 * 41.28705 * 20 19 18 43 43 H 1.09004 * 110.72845 * 204.22312 * 21 20 19 44 44 H 1.09000 * 110.72500 * 80.94455 * 21 20 19 45 45 H 1.09009 * 110.30586 * 263.03977 * 22 21 20 46 46 H 1.08998 * 110.39803 * 140.91741 * 22 21 20 47 47 H 1.09003 * 109.91405 * 333.51242 * 23 19 18 48 48 H 1.09004 * 109.91869 * 94.60334 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0573 -2.4767 6 1 1.0806 0.9748 -2.3756 7 6 1.9932 -0.4014 -3.7284 8 7 2.6764 -1.5185 -3.8513 9 14 1.4996 0.5638 -5.2496 10 1 0.7432 1.7753 -4.8432 11 1 2.7180 0.9687 -5.9958 12 1 0.6459 -0.2850 -6.1190 13 6 2.0401 -0.7214 1.2491 14 7 1.6515 0.0372 2.4456 15 6 2.3342 1.3372 2.4895 16 6 1.9126 -0.7361 3.6670 17 6 1.2735 -0.0295 4.8642 18 6 1.5459 -0.8346 6.1365 19 7 0.9330 -0.1560 7.2861 20 6 -0.5025 0.1291 7.0325 21 6 -1.0810 0.3296 8.4557 22 6 -0.3136 -0.7200 9.2918 23 6 0.9668 -1.0158 8.4890 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.1263 -0.7994 -1.2057 28 1 1.6054 -1.7197 -1.2954 29 1 2.9242 -1.8409 -4.7319 30 1 3.1264 -0.7996 1.2054 31 1 1.6054 -1.7199 1.2950 32 1 2.0679 1.9175 1.6060 33 1 3.4127 1.1806 2.5099 34 1 2.0282 1.8783 3.3849 35 1 1.4858 -1.7337 3.5636 36 1 2.9883 -0.8155 3.8238 37 1 1.7002 0.9680 4.9676 38 1 0.1978 0.0499 4.7075 39 1 1.1195 -1.8325 6.0334 40 1 2.6217 -0.9136 6.2930 41 1 -0.6155 1.0370 6.4398 42 1 -0.9812 -0.7162 6.5382 43 1 -2.1517 0.1258 8.4692 44 1 -0.8745 1.3369 8.8176 45 1 -0.9096 -1.6262 9.4007 46 1 -0.0607 -0.3144 10.2714 47 1 0.9866 -2.0652 8.1949 48 1 1.8468 -0.7816 9.0882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602650607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:42:34 Heat of formation + Delta-G solvation = -15.815156 kcal Electronic energy + Delta-G solvation = -20681.335474 eV Core-core repulsion = 17770.186276 eV Total energy + Delta-G solvation = -2911.149198 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -39.30892 -37.89056 -34.94497 -33.37350 -31.93224 -29.97929 -29.06956 -27.13037 -26.62994 -25.56764 -23.68346 -22.36921 -21.25271 -20.89896 -20.21900 -18.77033 -16.44255 -16.33348 -16.20411 -15.59325 -15.08887 -14.64975 -14.30211 -14.24150 -14.02276 -13.48883 -13.09458 -13.01534 -12.52700 -12.44986 -12.14934 -11.98659 -11.69987 -11.52877 -11.42175 -11.41201 -11.30388 -11.11661 -11.02997 -10.87518 -10.82405 -10.68791 -10.53494 -10.25523 -10.18347 -9.56335 -9.09322 -8.90848 -8.66697 -8.30671 -7.96620 -5.95452 -3.96203 3.33482 3.40974 3.45270 3.69013 4.19294 4.38852 4.43886 4.51100 4.65453 4.91771 5.00184 5.05946 5.20360 5.22947 5.33261 5.40348 5.40872 5.48219 5.52683 5.54390 5.59362 5.64928 5.69048 5.75320 5.80810 5.87885 5.88962 5.98955 6.09112 6.17637 6.19869 6.30935 6.44479 6.59136 6.64211 6.74777 6.80295 7.06252 7.18089 7.24946 7.44116 7.49032 7.72948 7.89085 8.05323 8.49711 9.10486 9.67030 11.16182 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.049175 B = 0.002634 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.257275 B =10626.136755 C =10806.056109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.056 0.944 4 C 0.026 3.974 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.061 3.939 14 N -0.538 5.538 15 C 0.022 3.978 16 C 0.056 3.944 17 C -0.115 4.115 18 C 0.048 3.952 19 N -0.519 5.519 20 C 0.033 3.967 21 C -0.125 4.125 22 C -0.132 4.132 23 C 0.034 3.966 24 H 0.038 0.962 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.012 0.988 28 H 0.015 0.985 29 H 0.258 0.742 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.020 0.980 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.043 0.957 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 1.690 24.683 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.075 0.925 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.066 4.066 14 N -0.262 5.262 15 C -0.127 4.127 16 C -0.073 4.073 17 C -0.153 4.153 18 C -0.081 4.081 19 N -0.243 5.243 20 C -0.094 4.094 21 C -0.163 4.163 22 C -0.170 4.170 23 C -0.094 4.094 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.062 0.938 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.517 2.131 24.602 25.104 hybrid contribution 0.359 -0.604 -1.079 1.288 sum -4.159 1.528 23.523 23.936 Atomic orbital electron populations 1.21574 0.95812 1.00421 1.00106 1.21220 0.95919 0.99118 0.93721 0.92546 1.19139 0.95881 0.95577 0.90548 1.21277 1.34355 1.08213 0.90957 0.92527 1.25032 0.95400 0.95124 0.99114 1.69983 1.39250 1.21301 1.23210 0.86574 0.78224 0.80142 0.83303 1.19750 1.21143 1.21102 1.22332 0.97518 0.97129 0.89667 1.62017 1.58231 1.04102 1.01861 1.22446 0.95755 0.91962 1.02503 1.22038 0.97934 0.97300 0.90017 1.21644 1.01962 0.99628 0.92027 1.22292 0.99962 0.95521 0.90303 1.64805 1.14745 1.41187 1.03545 1.23254 0.88019 1.01187 0.96970 1.22494 0.99237 0.99702 0.94906 1.22396 0.96092 0.99246 0.99241 1.22874 0.98638 0.95446 0.92442 0.94306 0.93949 0.92836 0.96990 0.96627 0.93197 0.95430 0.91505 0.90767 0.96106 0.91893 0.91238 0.95287 0.91082 0.91040 0.94658 0.90784 0.89699 0.93570 0.91106 0.90769 0.91624 0.91090 0.93836 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.69 2.26 -90.61 -0.20 -1.89 16 3 H 0.06 1.20 6.34 -51.93 -0.33 0.87 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.09 4.35 -3.82 -0.02 1.07 16 14 N -0.54 -8.18 4.22 -242.91 -1.02 -9.20 16 15 C 0.02 0.30 9.13 60.07 0.55 0.85 16 16 C 0.06 0.71 4.96 -3.82 -0.02 0.69 16 17 C -0.11 -1.25 4.80 -26.73 -0.13 -1.38 16 18 C 0.05 0.47 5.03 -3.83 -0.02 0.45 16 19 N -0.52 -5.03 5.40 -230.46 -1.24 -6.27 16 20 C 0.03 0.29 5.10 -1.90 -0.01 0.29 16 21 C -0.13 -0.91 7.06 -24.88 -0.18 -1.09 16 22 C -0.13 -0.90 6.93 -25.38 -0.18 -1.08 16 23 C 0.03 0.28 6.69 -2.76 -0.02 0.26 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 26 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 32 H 0.07 1.13 6.37 -51.93 -0.33 0.80 16 33 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.78 6.30 -51.93 -0.33 0.45 16 35 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 36 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16 37 H 0.07 0.81 6.47 -51.93 -0.34 0.47 16 38 H 0.07 0.82 6.80 -51.93 -0.35 0.47 16 39 H 0.04 0.34 7.81 -51.93 -0.41 -0.06 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.77 7.67 -51.93 -0.40 0.38 16 42 H 0.05 0.42 8.00 -51.93 -0.42 0.01 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.04 0.35 7.57 -51.93 -0.39 -0.05 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -29.91 364.18 -10.92 -40.83 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -9.45 Total: -4.58 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -0.40 Total: -16.63 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -1.53 Total: -42.00 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.91 -10.92 -40.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602650607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.014 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds