Wall clock time and date at job start Mon Mar 30 2020 19:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46910 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47081 * 119.99681 * 9 7 5 12 12 H 1.48493 * 109.47178 * 239.99915 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46901 * 109.46818 * 65.00620 * 13 2 1 15 15 C 1.46902 * 111.00023 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47288 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47230 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47473 * 180.02562 * 17 16 15 19 19 N 1.46893 * 109.47312 * 180.02562 * 18 17 16 20 20 C 1.46901 * 111.00315 * 66.04743 * 19 18 17 21 21 C 1.46905 * 110.99675 * 190.00118 * 19 18 17 22 22 C 1.53003 * 117.49586 * 243.74368 * 21 19 18 23 23 C 1.53007 * 117.49752 * 175.08829 * 21 19 18 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 28 28 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 29 29 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 31 31 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 32 32 H 1.00901 * 111.00083 * 303.94749 * 14 13 2 33 33 H 1.09000 * 109.47041 * 300.00315 * 15 14 13 34 34 H 1.09004 * 109.46766 * 59.99797 * 15 14 13 35 35 H 1.08993 * 109.47074 * 300.00164 * 16 15 14 36 36 H 1.09004 * 109.46404 * 60.00223 * 16 15 14 37 37 H 1.09003 * 109.46967 * 300.00534 * 17 16 15 38 38 H 1.09003 * 109.46940 * 60.00052 * 17 16 15 39 39 H 1.09000 * 109.47091 * 300.00857 * 18 17 16 40 40 H 1.09004 * 109.46738 * 59.99692 * 18 17 16 41 41 H 1.09005 * 109.46814 * 59.99454 * 20 19 18 42 42 H 1.08993 * 109.47390 * 179.97438 * 20 19 18 43 43 H 1.08996 * 109.46856 * 300.00378 * 20 19 18 44 44 H 1.08993 * 115.55313 * 29.41971 * 21 19 18 45 45 H 1.09000 * 117.49916 * 0.02562 * 22 21 19 46 46 H 1.09003 * 117.49483 * 145.02643 * 22 21 19 47 47 H 1.08995 * 117.50037 * 214.97875 * 23 21 19 48 48 H 1.09002 * 117.49371 * 359.97294 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.7431 1.7750 4.8433 11 1 0.6456 -0.2854 6.1189 12 1 2.7178 0.9682 5.9959 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6265 -3.6671 16 6 1.7026 0.1909 -4.8892 17 6 2.1973 -0.5003 -6.1614 18 6 1.7746 0.3174 -7.3835 19 7 2.2490 -0.3465 -8.6049 20 6 1.5750 -1.6374 -8.7981 21 6 2.0724 0.5203 -9.7777 22 6 1.1127 0.0440 -10.8701 23 6 2.6236 0.0208 -11.1148 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 2.9235 -1.8416 4.7319 30 1 3.1264 -0.7995 -1.2055 31 1 1.6055 -1.7198 -1.2951 32 1 0.6530 0.1793 -2.4754 33 1 3.2128 -0.7038 -3.6399 34 1 1.6922 -1.6246 -3.7300 35 1 0.6157 0.2678 -4.9162 36 1 2.1361 1.1891 -4.8264 37 1 3.2843 -0.5768 -6.1341 38 1 1.7642 -1.4986 -6.2243 39 1 0.6876 0.3944 -7.4108 40 1 2.2079 1.3156 -7.3202 41 1 0.5001 -1.4771 -8.8823 42 1 1.9445 -2.1074 -9.7095 43 1 1.7799 -2.2854 -7.9459 44 1 2.1206 1.5915 -9.5822 45 1 0.6121 -0.9122 -10.7183 46 1 0.5299 0.8020 -11.3934 47 1 3.0341 0.7634 -11.7989 48 1 3.1176 -0.9508 -11.1240 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602687708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:47:20 Heat of formation + Delta-G solvation = 2.764726 kcal Electronic energy + Delta-G solvation = -19831.852186 eV Core-core repulsion = 16921.508672 eV Total energy + Delta-G solvation = -2910.343514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 4.94 seconds Orbital eigenvalues (eV) -39.33209 -37.30121 -35.72754 -34.14833 -32.51533 -31.28719 -28.14084 -26.93343 -26.39119 -24.80094 -22.85300 -22.61178 -21.73350 -21.06572 -20.35928 -18.88586 -17.09602 -16.43610 -16.12517 -15.78676 -15.07091 -14.72589 -14.50388 -14.32934 -14.00728 -13.60706 -13.31321 -12.91173 -12.56883 -12.38960 -12.28465 -12.05904 -11.94052 -11.76786 -11.52908 -11.50233 -11.26316 -11.20585 -10.96769 -10.85612 -10.75302 -10.64550 -10.57009 -10.29723 -10.14071 -9.68955 -9.12144 -8.92250 -8.51930 -8.31258 -8.09477 -5.95701 -3.96695 3.24102 3.33495 3.40978 3.45205 3.62673 4.37981 4.44247 4.51667 4.53948 4.60873 4.72621 4.79991 4.94287 5.10016 5.19093 5.23975 5.25018 5.39235 5.40113 5.42385 5.43463 5.57260 5.61934 5.67194 5.71578 5.74012 5.81441 5.85180 5.92141 6.08194 6.19657 6.22137 6.30663 6.50166 6.59058 6.65099 6.72452 6.98065 7.13140 7.20266 7.42252 7.70057 7.73270 7.88977 8.04913 8.48913 9.09948 9.66637 11.15864 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.067893 B = 0.002050 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.314318 B =13658.108116 C =13780.467580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.692 5.692 15 C 0.059 3.941 16 C -0.115 4.115 17 C -0.115 4.115 18 C 0.057 3.943 19 N -0.511 5.511 20 C 0.016 3.984 21 C 0.020 3.980 22 C -0.221 4.221 23 C -0.171 4.171 24 H 0.031 0.969 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.259 0.741 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.336 0.664 33 H 0.070 0.930 34 H 0.023 0.977 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.035 0.965 40 H 0.076 0.924 41 H 0.031 0.969 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 1.755 -27.931 28.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.324 5.324 15 C -0.071 4.071 16 C -0.154 4.154 17 C -0.153 4.153 18 C -0.070 4.070 19 N -0.232 5.232 20 C -0.131 4.131 21 C -0.089 4.089 22 C -0.260 4.260 23 C -0.209 4.209 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.155 0.845 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.135 0.865 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.115 0.885 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.892 1.967 -27.682 27.816 hybrid contribution -1.680 -0.258 0.724 1.848 sum -3.573 1.709 -26.958 27.247 Atomic orbital electron populations 1.21740 0.96735 1.00383 1.00252 1.21227 0.94843 1.00104 0.94202 0.91648 1.19121 0.96162 0.95367 0.90402 1.21286 1.34463 1.08265 0.90990 0.92498 1.25031 0.95378 0.95123 0.99129 1.69983 1.39192 1.21273 1.23228 0.86565 0.78240 0.80109 0.83266 1.19757 1.21141 1.21095 1.22131 1.00324 0.94377 0.89597 1.60575 1.19443 1.50719 1.01636 1.21926 1.00624 0.94899 0.89642 1.21518 1.00678 1.00130 0.93041 1.21565 1.02145 0.98844 0.92764 1.22182 0.97807 0.98173 0.88842 1.61857 1.56353 1.03495 1.01540 1.22550 0.96424 0.91536 1.02623 1.22695 1.03043 0.96945 0.86214 1.23572 0.93448 1.03887 1.05108 1.23060 0.95677 1.03387 0.98784 0.94978 0.94078 0.91866 0.96769 0.96640 0.93180 0.91519 0.95945 0.84529 0.91186 0.95877 0.92409 0.90969 0.90895 0.92083 0.94651 0.90505 0.95086 0.91425 0.90748 0.86457 0.88276 0.88888 0.88494 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.77 2.55 -90.62 -0.23 -2.00 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 C 0.06 1.15 5.14 -3.82 -0.02 1.13 16 14 N -0.69 -10.42 6.50 -113.78 -0.74 -11.16 16 15 C 0.06 0.73 5.69 -3.82 -0.02 0.71 16 16 C -0.12 -1.15 5.47 -26.73 -0.15 -1.30 16 17 C -0.11 -1.01 5.14 -26.73 -0.14 -1.15 16 18 C 0.06 0.48 4.93 -3.83 -0.02 0.46 16 19 N -0.51 -4.32 4.97 -234.89 -1.17 -5.49 16 20 C 0.02 0.12 7.96 60.07 0.48 0.60 16 21 C 0.02 0.15 6.11 -67.70 -0.41 -0.26 16 22 C -0.22 -1.43 9.51 -26.69 -0.25 -1.68 16 23 C -0.17 -1.13 9.99 -26.69 -0.27 -1.39 16 24 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.34 4.77 6.98 -39.29 -0.27 4.50 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.53 6.55 -51.93 -0.34 0.19 16 39 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 40 H 0.08 0.62 7.96 -51.93 -0.41 0.21 16 41 H 0.03 0.22 7.23 -51.93 -0.38 -0.15 16 42 H 0.07 0.46 6.63 -51.93 -0.34 0.12 16 43 H 0.07 0.55 6.47 -51.93 -0.34 0.21 16 44 H 0.12 0.81 7.93 -51.93 -0.41 0.39 16 45 H 0.10 0.64 5.89 -51.93 -0.31 0.33 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.10 0.66 7.56 -51.93 -0.39 0.27 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -29.92 371.35 -11.14 -41.06 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -9.32 Total: -0.54 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -1.22 Total: -19.83 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -1.17 Total: -43.14 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.92 -11.14 -41.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602687708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.824 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.94 seconds