Wall clock time and date at job start Mon Mar 30 2020 19:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46910 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47081 * 119.99681 * 9 7 5 12 12 H 1.48493 * 109.47178 * 239.99915 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46901 * 109.46818 * 65.00620 * 13 2 1 15 15 C 1.46902 * 111.00023 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47288 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47230 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47473 * 180.02562 * 17 16 15 19 19 N 1.46893 * 109.47312 * 180.02562 * 18 17 16 20 20 C 1.46901 * 111.00315 * 66.04743 * 19 18 17 21 21 C 1.46905 * 110.99675 * 190.00118 * 19 18 17 22 22 C 1.53003 * 117.49586 * 243.74368 * 21 19 18 23 23 C 1.53007 * 117.49752 * 175.08829 * 21 19 18 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 28 28 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 29 29 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 31 31 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 32 32 H 1.00901 * 111.00083 * 303.94749 * 14 13 2 33 33 H 1.09000 * 109.47041 * 300.00315 * 15 14 13 34 34 H 1.09004 * 109.46766 * 59.99797 * 15 14 13 35 35 H 1.08993 * 109.47074 * 300.00164 * 16 15 14 36 36 H 1.09004 * 109.46404 * 60.00223 * 16 15 14 37 37 H 1.09003 * 109.46967 * 300.00534 * 17 16 15 38 38 H 1.09003 * 109.46940 * 60.00052 * 17 16 15 39 39 H 1.09000 * 109.47091 * 300.00857 * 18 17 16 40 40 H 1.09004 * 109.46738 * 59.99692 * 18 17 16 41 41 H 1.09005 * 109.46814 * 59.99454 * 20 19 18 42 42 H 1.08993 * 109.47390 * 179.97438 * 20 19 18 43 43 H 1.08996 * 109.46856 * 300.00378 * 20 19 18 44 44 H 1.08993 * 115.55313 * 29.41971 * 21 19 18 45 45 H 1.09000 * 117.49916 * 0.02562 * 22 21 19 46 46 H 1.09003 * 117.49483 * 145.02643 * 22 21 19 47 47 H 1.08995 * 117.50037 * 214.97875 * 23 21 19 48 48 H 1.09002 * 117.49371 * 359.97294 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.7431 1.7750 4.8433 11 1 0.6456 -0.2854 6.1189 12 1 2.7178 0.9682 5.9959 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6265 -3.6671 16 6 1.7026 0.1909 -4.8892 17 6 2.1973 -0.5003 -6.1614 18 6 1.7746 0.3174 -7.3835 19 7 2.2490 -0.3465 -8.6049 20 6 1.5750 -1.6374 -8.7981 21 6 2.0724 0.5203 -9.7777 22 6 1.1127 0.0440 -10.8701 23 6 2.6236 0.0208 -11.1148 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 2.9235 -1.8416 4.7319 30 1 3.1264 -0.7995 -1.2055 31 1 1.6055 -1.7198 -1.2951 32 1 0.6530 0.1793 -2.4754 33 1 3.2128 -0.7038 -3.6399 34 1 1.6922 -1.6246 -3.7300 35 1 0.6157 0.2678 -4.9162 36 1 2.1361 1.1891 -4.8264 37 1 3.2843 -0.5768 -6.1341 38 1 1.7642 -1.4986 -6.2243 39 1 0.6876 0.3944 -7.4108 40 1 2.2079 1.3156 -7.3202 41 1 0.5001 -1.4771 -8.8823 42 1 1.9445 -2.1074 -9.7095 43 1 1.7799 -2.2854 -7.9459 44 1 2.1206 1.5915 -9.5822 45 1 0.6121 -0.9122 -10.7183 46 1 0.5299 0.8020 -11.3934 47 1 3.0341 0.7634 -11.7989 48 1 3.1176 -0.9508 -11.1240 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602687708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:47:17 Heat of formation + Delta-G solvation = -15.245979 kcal Electronic energy + Delta-G solvation = -19832.633189 eV Core-core repulsion = 16921.508672 eV Total energy + Delta-G solvation = -2911.124517 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.90696 -38.63063 -36.77972 -35.42112 -34.17697 -32.52940 -29.28345 -28.49033 -27.40140 -26.22505 -24.26294 -23.29488 -22.87056 -21.85846 -20.94129 -20.57250 -18.53386 -17.66946 -17.13738 -16.63009 -16.56865 -15.97109 -15.59389 -15.31092 -15.26019 -14.73710 -14.45315 -14.14257 -13.97849 -13.52761 -13.35452 -13.31087 -12.97979 -12.81019 -12.75519 -12.61337 -12.38842 -12.34806 -12.23843 -12.18898 -11.97118 -11.86573 -11.57196 -11.51621 -11.36230 -11.20363 -11.05952 -10.86389 -10.53965 -9.33450 -9.10254 -8.17376 -6.26584 1.40291 1.40827 1.54019 2.42342 2.67511 3.06019 3.15985 3.33116 3.86345 3.98397 4.00802 4.08723 4.10801 4.19717 4.24649 4.30745 4.37719 4.44053 4.47389 4.59606 4.63521 4.74209 4.75770 4.76946 4.81562 4.87208 4.89307 4.96216 4.99898 5.03905 5.05571 5.12689 5.23272 5.24244 5.37519 5.39830 5.44381 5.48600 5.56218 5.80371 5.89473 6.06636 6.10363 6.14273 6.31732 6.54388 6.89631 7.41720 8.94919 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.067893 B = 0.002050 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.314318 B =13658.108116 C =13780.467580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.077 3.923 14 N -0.693 5.693 15 C 0.058 3.942 16 C -0.104 4.104 17 C -0.106 4.106 18 C 0.061 3.939 19 N -0.524 5.524 20 C 0.017 3.983 21 C 0.006 3.994 22 C -0.215 4.215 23 C -0.170 4.170 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.045 0.955 27 H -0.010 1.010 28 H -0.014 1.014 29 H 0.262 0.738 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.344 0.656 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.122 0.878 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.107 0.893 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 2.826 -29.002 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.096 4.096 3 H 0.075 0.925 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.053 4.053 14 N -0.325 5.325 15 C -0.071 4.071 16 C -0.143 4.143 17 C -0.145 4.145 18 C -0.066 4.066 19 N -0.246 5.246 20 C -0.130 4.130 21 C -0.103 4.103 22 C -0.254 4.254 23 C -0.208 4.208 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.008 0.992 28 H 0.004 0.996 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.164 0.836 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.139 0.861 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.125 0.875 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.068 3.046 -28.777 29.100 hybrid contribution -1.283 -0.620 1.003 1.743 sum -4.351 2.426 -27.774 28.217 Atomic orbital electron populations 1.21649 0.94864 1.00666 1.01182 1.21033 0.96345 0.98984 0.93219 0.92518 1.19019 0.94200 0.94613 0.92772 1.21680 1.34340 1.08563 0.92049 0.92009 1.25983 0.95296 0.96153 1.02750 1.70117 1.40360 1.22989 1.24205 0.85421 0.78044 0.78863 0.78859 1.18524 1.20483 1.20607 1.21831 0.99484 0.94223 0.89726 1.60500 1.20091 1.50463 1.01425 1.21990 1.00282 0.95434 0.89362 1.21405 1.01131 0.99478 0.92239 1.21459 1.01544 0.98954 0.92521 1.22110 0.97843 0.98037 0.88613 1.61852 1.56801 1.03997 1.01923 1.22550 0.96515 0.91201 1.02765 1.22802 1.04172 0.97116 0.86231 1.23592 0.93427 1.04014 1.04379 1.23109 0.95878 1.03415 0.98410 0.91384 0.94105 0.93540 0.99192 0.99584 0.92961 0.92682 0.95996 0.83639 0.91820 0.95444 0.91546 0.91301 0.91705 0.91857 0.94478 0.90410 0.94846 0.91040 0.90901 0.86056 0.88324 0.88049 0.87464 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 8.77 71.98 0.63 -3.99 16 2 C -0.08 -3.21 2.55 -10.79 -0.03 -3.23 16 3 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.03 1.69 4.45 29.85 0.13 1.82 16 5 C -0.53 -30.28 8.41 25.60 0.22 -30.06 16 6 H 0.06 3.41 7.06 -2.91 -0.02 3.38 16 7 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 8 N -0.94 -57.86 13.29 21.44 0.28 -57.57 16 9 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 C 0.08 2.72 5.14 86.30 0.44 3.16 16 14 N -0.69 -19.78 6.50 -513.88 -3.34 -23.12 16 15 C 0.06 1.37 5.69 86.30 0.49 1.86 16 16 C -0.10 -1.89 5.47 30.59 0.17 -1.72 16 17 C -0.11 -1.72 5.14 30.59 0.16 -1.57 16 18 C 0.06 0.93 4.93 86.30 0.43 1.35 16 19 N -0.52 -8.21 4.97 -897.05 -4.46 -12.67 16 20 C 0.02 0.24 7.96 127.69 1.02 1.25 16 21 C 0.01 0.08 6.11 44.92 0.27 0.36 16 22 C -0.22 -2.44 9.51 30.62 0.29 -2.15 16 23 C -0.17 -2.01 9.99 30.62 0.31 -1.70 16 24 H 0.07 1.99 6.68 -2.39 -0.02 1.97 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 1.84 6.95 -2.39 -0.02 1.82 16 27 H -0.01 -0.60 8.14 -2.39 -0.02 -0.61 16 28 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 29 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.34 8.90 6.98 -89.69 -0.63 8.28 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.01 6.55 -2.39 -0.02 0.99 16 39 H 0.04 0.55 8.12 -2.39 -0.02 0.53 16 40 H 0.08 1.15 7.96 -2.38 -0.02 1.13 16 41 H 0.03 0.43 7.23 -2.38 -0.02 0.41 16 42 H 0.07 0.90 6.63 -2.39 -0.02 0.88 16 43 H 0.07 0.99 6.47 -2.39 -0.02 0.98 16 44 H 0.12 1.50 7.93 -2.39 -0.02 1.49 16 45 H 0.10 1.13 5.89 -2.39 -0.01 1.11 16 46 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.09 1.16 7.56 -2.39 -0.02 1.14 16 Total: -1.00 -64.13 371.35 -0.24 -64.37 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.26 Total: 16.48 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 4.99 Total: -34.44 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -7.51 Total: -93.37 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.13 -0.24 -64.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602687708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.124 kcal (2) G-P(sol) polarization free energy of solvation -64.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds