Wall clock time and date at job start Mon Mar 30 2020 19:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99817 * 2 1 4 4 C 1.38231 * 119.99950 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00334 * 0.25364 * 4 3 2 6 6 S 1.76199 * 120.00451 * 179.72684 * 5 4 3 7 7 O 1.42103 * 106.40085 * 203.54285 * 6 5 4 8 8 O 1.42101 * 106.39886 * 336.45663 * 6 5 4 9 9 N 1.65597 * 107.21689 * 90.00027 * 6 5 4 10 10 C 1.34773 * 119.99970 * 65.00074 * 9 6 5 11 11 O 1.21684 * 120.00015 * 359.97438 * 10 9 6 12 12 C 1.46378 * 119.99746 * 179.97438 * 10 9 6 13 13 H 1.08002 * 120.00052 * 353.94116 * 12 10 9 14 14 C 1.40043 * 119.99905 * 173.94061 * 12 10 9 15 15 N 1.30668 * 120.00196 * 6.15061 * 14 12 10 16 16 Si 1.86806 * 120.00077 * 186.15111 * 14 12 10 17 17 H 1.48496 * 109.47143 * 94.98292 * 16 14 12 18 18 H 1.48500 * 109.46873 * 214.98213 * 16 14 12 19 19 H 1.48496 * 109.46907 * 334.98121 * 16 14 12 20 20 C 1.38239 * 119.99336 * 359.48797 * 5 4 3 21 21 C 1.38230 * 120.00316 * 179.97438 * 2 1 3 22 22 H 1.09006 * 109.47050 * 90.00177 * 1 2 3 23 23 H 1.08999 * 109.46977 * 210.00224 * 1 2 3 24 24 H 1.08998 * 109.46871 * 330.00576 * 1 2 3 25 25 H 1.08000 * 120.00268 * 359.97184 * 3 2 1 26 26 H 1.08001 * 120.00285 * 179.97438 * 4 3 2 27 27 H 0.97004 * 119.99546 * 244.99620 * 9 6 5 28 28 H 0.97006 * 120.00067 * 179.97438 * 15 14 12 29 29 H 1.08000 * 120.00016 * 180.25072 * 20 5 4 30 30 H 1.08001 * 119.99533 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 0.0001 -0.0042 6 16 6.0337 0.0002 -0.0108 7 8 6.4329 -1.2486 -0.5591 8 8 6.4329 1.2509 -0.5546 9 7 6.5298 -0.0027 1.5691 10 6 6.2611 -1.0620 2.3578 11 8 5.6535 -2.0161 1.9092 12 6 6.7001 -1.0647 3.7542 13 1 7.3226 -0.2643 4.1262 14 6 6.3129 -2.1052 4.6079 15 7 5.6621 -3.1333 4.1315 16 14 6.7268 -2.0233 6.4277 17 1 5.5734 -1.4578 7.1727 18 1 7.0191 -3.3896 6.9307 19 1 7.9168 -1.1576 6.6261 20 6 3.5806 -1.1970 0.0012 21 6 2.1982 -1.1971 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 1.6582 2.1325 -0.0005 26 1 4.1205 2.1325 0.0001 27 1 7.0139 0.7580 1.9268 28 1 5.3943 -3.8542 4.7228 29 1 4.1205 -2.1323 0.0015 30 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000275610.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:17 Heat of formation + Delta-G solvation = -124.687903 kcal Electronic energy + Delta-G solvation = -18436.857760 eV Core-core repulsion = 15322.689316 eV Total energy + Delta-G solvation = -3114.168444 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.28427 -39.67824 -38.21878 -36.98097 -34.99844 -34.37147 -33.95854 -32.02641 -28.65416 -28.16748 -23.85601 -23.27895 -22.87254 -20.46409 -19.81132 -19.05861 -18.16247 -17.69215 -16.85221 -16.34765 -16.07446 -15.77296 -15.40569 -14.94503 -14.85071 -14.68583 -14.48428 -13.81333 -13.29613 -13.22529 -13.14764 -13.11376 -13.07477 -12.99740 -12.87025 -12.70472 -12.09953 -12.02687 -11.83153 -11.17716 -10.90421 -10.25440 -10.04574 -9.96502 -8.42592 -7.02749 -0.63920 -0.17135 0.33662 1.40046 1.43026 1.59739 1.95336 2.18251 2.28425 2.49847 2.77695 3.30893 3.48447 3.80749 3.86533 3.97161 4.33118 4.37982 4.64871 4.68343 4.73534 4.81080 5.00392 5.08700 5.15308 5.25154 5.26066 5.46911 5.50959 5.91285 5.99474 6.70217 6.81204 7.98521 8.49546 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.007191 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.762090 B = 3892.866220 C = 4725.986285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.031 4.031 3 C -0.148 4.148 4 C -0.030 4.030 5 C -0.687 4.687 6 S 2.693 3.307 7 O -0.990 6.990 8 O -0.978 6.978 9 N -1.051 6.051 10 C 0.533 3.467 11 O -0.578 6.578 12 C -0.551 4.551 13 H 0.101 0.899 14 C 0.031 3.969 15 N -0.803 5.803 16 Si 1.001 2.999 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.246 1.246 20 C -0.014 4.014 21 C -0.160 4.160 22 H 0.095 0.905 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.171 0.829 26 H 0.156 0.844 27 H 0.430 0.570 28 H 0.281 0.719 29 H 0.115 0.885 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 8.968 -2.220 12.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.031 4.031 3 C -0.166 4.166 4 C -0.050 4.050 5 C -0.778 4.778 6 S 2.788 3.212 7 O -0.981 6.981 8 O -0.969 6.969 9 N -0.819 5.819 10 C 0.340 3.660 11 O -0.462 6.462 12 C -0.589 4.589 13 H 0.119 0.881 14 C -0.187 4.187 15 N -0.431 5.431 16 Si 0.820 3.180 17 H -0.186 1.186 18 H -0.198 1.198 19 H -0.169 1.169 20 C -0.033 4.033 21 C -0.179 4.179 22 H 0.114 0.886 23 H 0.095 0.905 24 H 0.109 0.891 25 H 0.188 0.812 26 H 0.173 0.827 27 H 0.267 0.733 28 H 0.091 0.909 29 H 0.133 0.867 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.894 8.099 -3.277 12.468 hybrid contribution 0.156 -0.139 0.995 1.017 sum -8.738 7.960 -2.282 12.038 Atomic orbital electron populations 1.21000 0.87462 1.04580 1.04221 1.20737 0.98576 0.92421 0.91351 1.21556 0.93257 0.99456 1.02376 1.21249 0.96135 0.95909 0.91658 1.30421 1.25443 1.00642 1.21260 1.01583 0.74581 0.72230 0.72841 1.93510 1.81759 1.45394 1.77418 1.93512 1.82563 1.43733 1.77078 1.54681 1.67447 1.28799 1.31002 1.18519 0.79963 0.79707 0.87782 1.90708 1.45898 1.34807 1.74783 1.21567 1.34009 1.10556 0.92747 0.88065 1.27026 0.92389 0.92993 1.06322 1.70124 1.27754 1.06450 1.38796 0.84943 0.79999 0.78809 0.74277 1.18557 1.19763 1.16943 1.21013 0.95987 0.96503 0.89812 1.21439 0.93138 0.99834 1.03451 0.88620 0.90530 0.89058 0.81195 0.82657 0.73320 0.90852 0.86679 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 10.01 71.24 0.71 -1.18 16 2 C -0.03 -0.80 5.88 -19.87 -0.12 -0.92 16 3 C -0.15 -3.80 9.70 22.27 0.22 -3.59 16 4 C -0.03 -0.96 9.52 22.27 0.21 -0.75 16 5 C -0.69 -27.54 5.75 22.27 0.13 -27.41 16 6 S 2.69 117.09 5.40 -56.49 -0.30 116.79 16 7 O -0.99 -51.65 16.24 -120.90 -1.96 -53.61 16 8 O -0.98 -40.17 17.28 -128.00 -2.21 -42.38 16 9 N -1.05 -46.56 5.70 -176.63 -1.01 -47.57 16 10 C 0.53 29.15 7.58 86.36 0.65 29.80 16 11 O -0.58 -35.63 12.21 12.01 0.15 -35.49 16 12 C -0.55 -29.03 9.53 24.83 0.24 -28.79 16 13 H 0.10 4.66 7.85 -2.91 -0.02 4.64 16 14 C 0.03 1.59 5.49 85.30 0.47 2.06 16 15 N -0.80 -45.67 11.85 21.83 0.26 -45.41 16 16 Si 1.00 37.83 29.56 68.60 2.03 39.86 16 17 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 18 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 20 C -0.01 -0.57 8.52 22.27 0.19 -0.38 16 21 C -0.16 -5.30 9.70 22.27 0.22 -5.08 16 22 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 23 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 24 H 0.09 1.14 8.09 -2.39 -0.02 1.12 16 25 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 26 H 0.16 4.18 7.62 -2.91 -0.02 4.16 16 27 H 0.43 15.49 8.81 -96.75 -0.85 14.64 16 28 H 0.28 14.40 8.29 -92.70 -0.77 13.64 16 29 H 0.12 5.56 6.82 -2.91 -0.02 5.54 16 30 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -77.19 281.07 0.20 -77.00 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.33 Total: 27.06 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 2.92 Total: -36.24 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -0.75 Total: -92.98 kcal Atomic # 8 Polarization: -127.46 SS G_CDS: -4.03 Total: -131.48 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Atomic # 16 Polarization: 117.09 SS G_CDS: -0.30 Total: 116.79 kcal Total: -77.19 0.20 -77.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000275610.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.689 kcal (2) G-P(sol) polarization free energy of solvation -77.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds