Wall clock time and date at job start Mon Mar 30 2020 19:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 120.00118 * 2 1 4 4 N 1.34784 * 119.99893 * 180.02562 * 2 1 3 5 5 C 1.39923 * 119.99354 * 184.62204 * 4 2 1 6 6 C 1.38874 * 120.06578 * 144.91266 * 5 4 2 7 7 C 1.38118 * 119.92887 * 180.29339 * 6 5 4 8 8 C 1.38285 * 120.06701 * 359.47026 * 7 6 5 9 9 S 1.76192 * 119.92761 * 180.27646 * 8 7 6 10 10 O 1.42099 * 106.40558 * 23.77074 * 9 8 7 11 11 O 1.42104 * 106.40171 * 156.69073 * 9 8 7 12 12 C 1.76197 * 107.21932 * 270.23164 * 9 8 7 13 13 H 1.08001 * 120.00264 * 359.97438 * 12 9 8 14 14 C 1.37882 * 120.00356 * 180.02562 * 12 9 8 15 15 N 1.31510 * 120.00196 * 180.02562 * 14 12 9 16 16 Si 1.86802 * 119.99801 * 359.97438 * 14 12 9 17 17 H 1.48498 * 109.47161 * 90.00114 * 16 14 12 18 18 H 1.48493 * 109.47214 * 210.00399 * 16 14 12 19 19 H 1.48504 * 109.47264 * 330.00448 * 16 14 12 20 20 C 1.38279 * 120.13887 * 0.50566 * 8 7 6 21 21 C 1.38106 * 120.07688 * 359.77004 * 20 8 7 22 22 H 1.09001 * 109.47129 * 239.99532 * 1 2 3 23 23 H 1.08994 * 109.47196 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47127 * 120.00090 * 1 2 3 25 25 H 0.96992 * 119.99844 * 4.61553 * 4 2 1 26 26 H 1.08003 * 120.03857 * 0.02562 * 6 5 4 27 27 H 1.08000 * 119.96342 * 179.69542 * 7 6 5 28 28 H 0.97001 * 119.99612 * 180.02562 * 15 14 12 29 29 H 1.08008 * 119.96312 * 179.74597 * 20 8 7 30 30 H 1.08003 * 120.04255 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5768 -1.1692 0.0971 6 6 4.2241 -2.1809 0.7942 7 6 5.6016 -2.1767 0.8940 8 6 6.3368 -1.1724 0.2913 9 16 8.0944 -1.1746 0.4148 10 8 8.4778 -2.5206 0.6608 11 8 8.5751 -0.4189 -0.6885 12 6 8.5167 -0.2644 1.8631 13 1 7.7389 0.1659 2.4765 14 6 9.8403 -0.1005 2.2130 15 7 10.1555 0.5784 3.2943 16 14 11.1858 -0.8441 1.1518 17 1 11.5965 0.1359 0.1145 18 1 12.3550 -1.1848 2.0015 19 1 10.6755 -2.0747 0.4956 20 6 5.6952 -0.1639 -0.4039 21 6 4.3177 -0.1593 -0.5026 22 1 -0.3633 -0.5139 0.8899 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 1.6983 -2.0058 -0.0685 26 1 3.6507 -2.9679 1.2616 27 1 6.1053 -2.9605 1.4402 28 1 11.0867 0.6939 3.5402 29 1 6.2720 0.6213 -0.8701 30 1 3.8171 0.6289 -1.0454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000395139.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:22 Heat of formation + Delta-G solvation = -83.404294 kcal Electronic energy + Delta-G solvation = -17943.942794 eV Core-core repulsion = 14831.564541 eV Total energy + Delta-G solvation = -3112.378252 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56632 -38.31296 -35.61468 -34.92031 -34.39484 -33.02074 -31.06841 -30.75170 -28.66981 -26.38875 -23.19582 -22.61997 -20.63955 -18.82254 -17.94644 -17.41166 -17.10906 -16.66250 -15.75539 -15.14010 -14.80414 -14.45269 -13.96439 -13.80080 -13.46375 -13.20791 -13.16796 -12.91062 -12.79860 -12.64085 -12.36656 -11.37517 -11.26298 -11.05265 -10.58966 -10.57896 -10.47529 -10.41902 -9.99660 -9.50553 -9.18276 -8.97064 -8.73819 -8.27150 -6.78664 -5.34201 1.07346 1.61761 1.90817 2.34850 2.84864 3.10281 3.21182 3.30082 3.80375 3.98122 4.42557 4.60103 4.82809 4.86644 4.96705 5.00242 5.14378 5.39743 5.42745 5.53673 5.60494 5.68064 6.05240 6.21218 6.29075 6.41137 6.53454 6.73659 7.13524 7.16715 7.48725 7.87275 8.22997 8.70277 10.33229 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.040611 B = 0.005043 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.305688 B = 5550.382435 C = 5712.786150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.519 6.519 4 N -0.676 5.676 5 C 0.174 3.826 6 C -0.170 4.170 7 C -0.007 4.007 8 C -0.642 4.642 9 S 2.562 3.438 10 O -0.989 6.989 11 O -0.991 6.991 12 C -0.997 4.997 13 H 0.123 0.877 14 C 0.153 3.847 15 N -0.821 5.821 16 Si 0.801 3.199 17 H -0.245 1.245 18 H -0.255 1.255 19 H -0.217 1.217 20 C -0.007 4.007 21 C -0.147 4.147 22 H 0.091 0.909 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.411 0.589 26 H 0.130 0.870 27 H 0.146 0.854 28 H 0.282 0.718 29 H 0.145 0.855 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.279 -5.075 -5.314 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.295 3.705 3 O -0.394 6.394 4 N -0.322 5.322 5 C 0.080 3.920 6 C -0.191 4.191 7 C -0.026 4.026 8 C -0.727 4.727 9 S 2.748 3.252 10 O -0.986 6.986 11 O -0.988 6.988 12 C -1.131 5.131 13 H 0.141 0.859 14 C -0.066 4.066 15 N -0.450 5.450 16 Si 0.621 3.379 17 H -0.169 1.169 18 H -0.179 1.179 19 H -0.139 1.139 20 C -0.026 4.026 21 C -0.167 4.167 22 H 0.110 0.890 23 H 0.115 0.885 24 H 0.109 0.891 25 H 0.247 0.753 26 H 0.148 0.852 27 H 0.164 0.836 28 H 0.092 0.908 29 H 0.163 0.837 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.317 -4.618 -5.770 17.913 hybrid contribution -0.297 -0.271 0.333 0.522 sum -16.614 -4.889 -5.438 18.153 Atomic orbital electron populations 1.21924 0.90611 1.06047 1.04514 1.21060 0.90929 0.83193 0.75340 1.90775 1.70420 1.31228 1.46958 1.43652 1.05331 1.10021 1.73181 1.17944 0.82097 0.96470 0.95537 1.20928 0.95108 1.00592 1.02504 1.20813 0.92995 0.95609 0.93199 1.30972 1.28192 1.03280 1.10245 1.01870 0.71628 0.75013 0.76737 1.93435 1.80114 1.37865 1.87165 1.93384 1.77480 1.72433 1.55461 1.29979 1.01738 1.51642 1.29731 0.85869 1.24422 0.97816 0.90828 0.93562 1.69982 1.20318 1.33052 1.21626 0.87856 0.84085 0.83522 0.82427 1.16874 1.17880 1.13877 1.20948 0.94027 0.95211 0.92455 1.21315 0.93789 0.99896 1.01738 0.89030 0.88504 0.89088 0.75269 0.85230 0.83643 0.90780 0.83716 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.32 36.01 0.37 -0.60 16 2 C 0.51 5.61 7.78 -10.98 -0.09 5.52 16 3 O -0.52 -8.35 14.52 5.55 0.08 -8.26 16 4 N -0.68 -6.99 5.34 -9.86 -0.05 -7.05 16 5 C 0.17 2.57 6.30 -83.69 -0.53 2.04 16 6 C -0.17 -2.49 9.97 -39.39 -0.39 -2.88 16 7 C -0.01 -0.13 9.51 -39.61 -0.38 -0.50 16 8 C -0.64 -13.47 5.81 -39.55 -0.23 -13.70 16 9 S 2.56 64.72 3.86 -107.50 -0.42 64.30 16 10 O -0.99 -26.02 15.17 -57.17 -0.87 -26.88 16 11 O -0.99 -26.38 15.97 -57.17 -0.91 -27.29 16 12 C -1.00 -28.12 10.12 30.60 0.31 -27.81 16 13 H 0.12 3.54 8.06 -52.49 -0.42 3.12 16 14 C 0.15 4.41 5.47 -17.82 -0.10 4.32 16 15 N -0.82 -23.81 13.96 55.43 0.77 -23.04 16 16 Si 0.80 20.46 26.54 -169.99 -4.51 15.95 16 17 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.25 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.22 -5.57 5.61 56.52 0.32 -5.26 16 20 C -0.01 -0.14 9.51 -39.61 -0.38 -0.52 16 21 C -0.15 -2.53 8.70 -39.40 -0.34 -2.87 16 22 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.10 0.58 8.12 -51.93 -0.42 0.16 16 24 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.41 2.49 8.82 -40.82 -0.36 2.13 16 26 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 27 H 0.15 2.47 7.62 -52.49 -0.40 2.07 16 28 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.15 2.72 7.61 -52.48 -0.40 2.32 16 30 H 0.14 2.37 6.22 -52.48 -0.33 2.04 16 LS Contribution 277.78 15.07 4.19 4.19 Total: -1.00 -35.70 277.78 -6.28 -41.99 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -2.82 Total: 3.11 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: -1.75 Total: -37.00 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.72 Total: -30.09 kcal Atomic # 8 Polarization: -60.74 SS G_CDS: -1.70 Total: -62.44 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.51 Total: 15.95 kcal Atomic # 16 Polarization: 64.72 SS G_CDS: -0.42 Total: 64.30 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -35.70 -6.28 -41.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000395139.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.419 kcal (2) G-P(sol) polarization free energy of solvation -35.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds