Wall clock time and date at job start Mon Mar 30 2020 19:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 120.00118 * 2 1 4 4 N 1.34784 * 119.99893 * 180.02562 * 2 1 3 5 5 C 1.39923 * 119.99354 * 184.62204 * 4 2 1 6 6 C 1.38874 * 120.06578 * 144.91266 * 5 4 2 7 7 C 1.38118 * 119.92887 * 180.29339 * 6 5 4 8 8 C 1.38285 * 120.06701 * 359.47026 * 7 6 5 9 9 S 1.76192 * 119.92761 * 180.27646 * 8 7 6 10 10 O 1.42099 * 106.40558 * 23.77074 * 9 8 7 11 11 O 1.42104 * 106.40171 * 156.69073 * 9 8 7 12 12 C 1.76197 * 107.21932 * 270.23164 * 9 8 7 13 13 H 1.08001 * 120.00264 * 359.97438 * 12 9 8 14 14 C 1.37882 * 120.00356 * 180.02562 * 12 9 8 15 15 N 1.31510 * 120.00196 * 180.02562 * 14 12 9 16 16 Si 1.86802 * 119.99801 * 359.97438 * 14 12 9 17 17 H 1.48498 * 109.47161 * 90.00114 * 16 14 12 18 18 H 1.48493 * 109.47214 * 210.00399 * 16 14 12 19 19 H 1.48504 * 109.47264 * 330.00448 * 16 14 12 20 20 C 1.38279 * 120.13887 * 0.50566 * 8 7 6 21 21 C 1.38106 * 120.07688 * 359.77004 * 20 8 7 22 22 H 1.09001 * 109.47129 * 239.99532 * 1 2 3 23 23 H 1.08994 * 109.47196 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47127 * 120.00090 * 1 2 3 25 25 H 0.96992 * 119.99844 * 4.61553 * 4 2 1 26 26 H 1.08003 * 120.03857 * 0.02562 * 6 5 4 27 27 H 1.08000 * 119.96342 * 179.69542 * 7 6 5 28 28 H 0.97001 * 119.99612 * 180.02562 * 15 14 12 29 29 H 1.08008 * 119.96312 * 179.74597 * 20 8 7 30 30 H 1.08003 * 120.04255 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5768 -1.1692 0.0971 6 6 4.2241 -2.1809 0.7942 7 6 5.6016 -2.1767 0.8940 8 6 6.3368 -1.1724 0.2913 9 16 8.0944 -1.1746 0.4148 10 8 8.4778 -2.5206 0.6608 11 8 8.5751 -0.4189 -0.6885 12 6 8.5167 -0.2644 1.8631 13 1 7.7389 0.1659 2.4765 14 6 9.8403 -0.1005 2.2130 15 7 10.1555 0.5784 3.2943 16 14 11.1858 -0.8441 1.1518 17 1 11.5965 0.1359 0.1145 18 1 12.3550 -1.1848 2.0015 19 1 10.6755 -2.0747 0.4956 20 6 5.6952 -0.1639 -0.4039 21 6 4.3177 -0.1593 -0.5026 22 1 -0.3633 -0.5139 0.8899 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 1.6983 -2.0058 -0.0685 26 1 3.6507 -2.9679 1.2616 27 1 6.1053 -2.9605 1.4402 28 1 11.0867 0.6939 3.5402 29 1 6.2720 0.6213 -0.8701 30 1 3.8171 0.6289 -1.0454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000395139.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:21 Heat of formation + Delta-G solvation = -112.375478 kcal Electronic energy + Delta-G solvation = -17945.199079 eV Core-core repulsion = 14831.564541 eV Total energy + Delta-G solvation = -3113.634537 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.055 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62139 -39.54579 -37.66034 -36.46703 -36.01082 -35.20229 -32.13310 -31.97194 -29.62356 -28.57440 -24.45074 -23.95573 -21.65851 -20.79559 -19.41483 -19.07555 -18.50031 -18.04244 -17.11772 -16.83328 -16.24848 -15.68831 -15.50477 -15.43058 -15.13152 -14.98628 -14.50890 -14.27184 -14.09620 -13.43513 -13.37286 -13.14553 -13.04722 -12.72150 -12.56823 -12.49123 -12.31778 -11.70558 -11.50593 -11.32172 -11.08340 -10.94592 -10.09102 -9.53007 -8.97059 -7.55731 -0.33351 0.00047 0.26493 1.07005 1.17107 1.24747 1.45421 1.91483 1.95703 2.41401 2.46323 2.91011 3.40447 3.60315 3.78216 3.89677 4.04708 4.27400 4.41445 4.53102 4.60676 4.67658 4.79190 4.93256 5.06210 5.13056 5.19804 5.28207 5.35978 5.83752 5.98283 6.35087 6.50527 7.05699 8.20694 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.040611 B = 0.005043 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.305688 B = 5550.382435 C = 5712.786150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.501 3.499 3 O -0.575 6.575 4 N -0.658 5.658 5 C 0.188 3.812 6 C -0.152 4.152 7 C -0.019 4.019 8 C -0.664 4.664 9 S 2.575 3.425 10 O -1.004 7.004 11 O -1.013 7.013 12 C -1.023 5.023 13 H 0.102 0.898 14 C 0.108 3.892 15 N -0.853 5.853 16 Si 0.827 3.173 17 H -0.239 1.239 18 H -0.216 1.216 19 H -0.223 1.223 20 C -0.026 4.026 21 C -0.156 4.156 22 H 0.119 0.881 23 H 0.092 0.908 24 H 0.122 0.878 25 H 0.437 0.563 26 H 0.182 0.818 27 H 0.154 0.846 28 H 0.293 0.707 29 H 0.136 0.864 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.067 -6.870 -5.622 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.292 3.708 3 O -0.454 6.454 4 N -0.306 5.306 5 C 0.092 3.908 6 C -0.173 4.173 7 C -0.039 4.039 8 C -0.755 4.755 9 S 2.765 3.235 10 O -1.001 7.001 11 O -1.010 7.010 12 C -1.155 5.155 13 H 0.120 0.880 14 C -0.109 4.109 15 N -0.483 5.483 16 Si 0.643 3.357 17 H -0.162 1.162 18 H -0.138 1.138 19 H -0.145 1.145 20 C -0.045 4.045 21 C -0.177 4.177 22 H 0.138 0.862 23 H 0.111 0.889 24 H 0.141 0.859 25 H 0.278 0.722 26 H 0.200 0.800 27 H 0.171 0.829 28 H 0.104 0.896 29 H 0.154 0.846 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.074 -6.437 -6.049 21.020 hybrid contribution 0.298 0.307 0.433 0.609 sum -18.775 -6.130 -5.616 20.534 Atomic orbital electron populations 1.21967 0.85727 1.06782 1.07308 1.22183 0.93064 0.82162 0.73353 1.90769 1.71896 1.33290 1.49426 1.43658 1.03295 1.11527 1.72140 1.18097 0.84364 0.94992 0.93312 1.21340 0.93730 1.01225 1.00984 1.21094 0.94790 0.94977 0.93024 1.30235 1.25059 1.06106 1.14057 1.01009 0.73502 0.73914 0.75056 1.93396 1.81927 1.37741 1.87075 1.93340 1.79565 1.72859 1.55270 1.30517 1.01604 1.52181 1.31246 0.87985 1.25211 0.99751 0.91266 0.94650 1.70008 1.21657 1.33966 1.22681 0.87454 0.83344 0.82841 0.82047 1.16232 1.13817 1.14473 1.20963 0.95324 0.95056 0.93172 1.21395 0.92882 1.01026 1.02411 0.86220 0.88928 0.85920 0.72217 0.80035 0.82879 0.89627 0.84580 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 10.32 71.24 0.74 -0.34 16 2 C 0.50 9.51 7.78 87.66 0.68 10.19 16 3 O -0.58 -17.82 14.52 -3.04 -0.04 -17.87 16 4 N -0.66 -10.88 5.34 -303.49 -1.62 -12.50 16 5 C 0.19 5.04 6.30 38.15 0.24 5.28 16 6 C -0.15 -3.90 9.97 22.39 0.22 -3.68 16 7 C -0.02 -0.67 9.51 22.25 0.21 -0.46 16 8 C -0.66 -28.28 5.81 22.29 0.13 -28.15 16 9 S 2.58 133.79 3.86 -56.49 -0.22 133.58 16 10 O -1.00 -53.59 15.17 -128.00 -1.94 -55.53 16 11 O -1.01 -55.69 15.97 -128.00 -2.04 -57.74 16 12 C -1.02 -60.11 10.12 67.74 0.69 -59.42 16 13 H 0.10 6.21 8.06 -2.91 -0.02 6.19 16 14 C 0.11 6.36 5.47 84.66 0.46 6.82 16 15 N -0.85 -50.60 13.96 21.45 0.30 -50.30 16 16 Si 0.83 41.69 26.54 68.60 1.82 43.51 16 17 H -0.24 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.22 -9.50 7.11 99.48 0.71 -8.79 16 19 H -0.22 -11.39 5.61 99.48 0.56 -10.83 16 20 C -0.03 -1.02 9.51 22.25 0.21 -0.81 16 21 C -0.16 -5.29 8.70 22.39 0.19 -5.10 16 22 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 23 H 0.09 0.79 8.12 -2.39 -0.02 0.77 16 24 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.44 2.81 8.82 -92.71 -0.82 1.99 16 26 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 27 H 0.15 5.01 7.62 -2.91 -0.02 4.99 16 28 H 0.29 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.14 5.46 7.61 -2.91 -0.02 5.44 16 30 H 0.14 4.80 6.22 -2.91 -0.02 4.78 16 Total: -1.00 -81.43 277.78 0.25 -81.19 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.22 Total: 11.33 kcal Atomic # 6 Polarization: -79.45 SS G_CDS: 3.78 Total: -75.67 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -1.32 Total: -62.80 kcal Atomic # 8 Polarization: -127.10 SS G_CDS: -4.03 Total: -131.13 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.82 Total: 43.51 kcal Atomic # 16 Polarization: 133.79 SS G_CDS: -0.22 Total: 133.58 kcal Total: -81.43 0.25 -81.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000395139.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.186 kcal (2) G-P(sol) polarization free energy of solvation -81.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds