Wall clock time and date at job start Mon Mar 30 2020 19:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.34968 * 116.99647 * 2 1 4 4 O 1.21691 * 120.00559 * 0.02562 * 3 2 1 5 5 C 1.41561 * 119.99663 * 179.97438 * 3 2 1 6 6 S 1.75808 * 125.50328 * 354.71467 * 5 3 2 7 7 C 1.70556 * 91.71963 * 180.02562 * 6 5 3 8 8 C 1.33468 * 111.29510 * 0.02562 * 7 6 5 9 9 C 1.50702 * 122.44464 * 179.97438 * 8 7 6 10 10 C 1.37882 * 125.50173 * 174.73381 * 5 3 2 11 11 N 1.38948 * 123.56291 * 0.02562 * 10 5 3 12 12 C 1.34774 * 119.99812 * 116.50794 * 11 10 5 13 13 O 1.21758 * 120.00543 * 4.99554 * 12 11 10 14 14 C 1.41777 * 119.99424 * 184.99434 * 12 11 10 15 15 H 1.07997 * 120.00080 * 0.02562 * 14 12 11 16 16 C 1.40144 * 119.99767 * 180.02562 * 14 12 11 17 17 N 1.30625 * 119.99957 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00204 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47371 * 59.99358 * 18 16 14 20 20 H 1.48491 * 109.47394 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46937 * 299.99825 * 18 16 14 22 22 H 1.09004 * 109.47512 * 299.99688 * 1 2 3 23 23 H 1.09003 * 109.47433 * 59.99596 * 1 2 3 24 24 H 1.09005 * 109.47218 * 179.97438 * 1 2 3 25 25 H 1.08003 * 124.34827 * 179.97438 * 7 6 5 26 26 H 1.08997 * 109.47139 * 277.21524 * 9 8 7 27 27 H 1.08997 * 109.46851 * 37.21270 * 9 8 7 28 28 H 1.08995 * 109.46874 * 157.21186 * 9 8 7 29 29 H 0.96998 * 119.99494 * 296.51428 * 11 10 5 30 30 H 0.97008 * 120.00091 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2026 0.0000 4 8 1.3789 2.2232 0.0005 5 6 3.4553 1.2767 0.0005 6 16 4.5495 -0.0930 0.1331 7 6 5.9157 0.9243 0.0468 8 6 5.5596 2.2050 -0.0728 9 6 6.5696 3.3194 -0.1693 10 6 4.1965 2.4348 -0.1024 11 7 3.6331 3.6994 -0.2215 12 6 3.8310 4.6189 0.7438 13 8 4.5766 4.3736 1.6746 14 6 3.1710 5.8718 0.6752 15 1 2.5094 6.0891 -0.1502 16 6 3.3772 6.8282 1.6786 17 7 4.1771 6.5650 2.6773 18 14 2.5072 8.4787 1.5888 19 1 1.0376 8.2646 1.5937 20 1 2.8905 9.3048 2.7617 21 1 2.9012 9.1786 0.3397 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 6.9376 0.5768 0.0850 26 1 6.9030 3.5952 0.8311 27 1 7.4240 2.9853 -0.7579 28 1 6.1121 4.1835 -0.6510 29 1 3.0973 3.9202 -0.9993 30 1 4.3201 7.2271 3.3717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001026393.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:25 Heat of formation + Delta-G solvation = -86.375435 kcal Electronic energy + Delta-G solvation = -18429.004519 eV Core-core repulsion = 15316.497429 eV Total energy + Delta-G solvation = -3112.507091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.22777 -38.91417 -36.43781 -35.96726 -32.95820 -32.23942 -30.57309 -27.92189 -27.25644 -26.19629 -23.82403 -20.81706 -20.59723 -18.24323 -18.02134 -17.52559 -16.52101 -16.12268 -15.77608 -15.42260 -14.63056 -14.14908 -13.75077 -13.38144 -13.08780 -12.87528 -12.72280 -12.38451 -11.94620 -11.65214 -11.46400 -11.36762 -11.24739 -10.98380 -10.63445 -10.52624 -10.47107 -10.31636 -10.09268 -8.98519 -8.63555 -8.11701 -7.73980 -7.38192 -6.30262 -4.80540 0.76604 1.89396 2.27913 2.68760 3.12223 3.14669 3.17070 3.19672 3.43672 4.05529 4.47002 4.73471 5.23406 5.31825 5.35000 5.46901 5.54747 5.70171 5.82203 5.94927 6.17787 6.35870 6.38778 6.65172 6.83093 6.96738 7.32281 7.89229 8.08260 8.18892 8.21479 8.89136 9.36063 10.46800 10.68381 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.020382 B = 0.006956 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.443603 B = 4024.055197 C = 5119.623870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.362 6.362 3 C 0.540 3.460 4 O -0.488 6.488 5 C -0.323 4.323 6 S 0.200 5.800 7 C -0.223 4.223 8 C -0.107 4.107 9 C -0.081 4.081 10 C 0.287 3.713 11 N -0.691 5.691 12 C 0.557 3.443 13 O -0.569 6.569 14 C -0.533 4.533 15 H 0.069 0.931 16 C 0.089 3.911 17 N -0.751 5.751 18 Si 0.911 3.089 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.096 0.904 25 H 0.167 0.833 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.397 0.603 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 -11.073 -6.592 12.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.280 6.280 3 C 0.386 3.614 4 O -0.377 6.377 5 C -0.443 4.443 6 S 0.466 5.534 7 C -0.361 4.361 8 C -0.122 4.122 9 C -0.140 4.140 10 C 0.174 3.826 11 N -0.342 5.342 12 C 0.366 3.634 13 O -0.452 6.452 14 C -0.569 4.569 15 H 0.087 0.913 16 C -0.133 4.133 17 N -0.379 5.379 18 Si 0.736 3.264 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.191 1.191 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.184 0.816 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.233 0.767 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.281 -12.405 -5.559 13.597 hybrid contribution -0.724 2.419 -0.459 2.566 sum -1.005 -9.986 -6.018 11.703 Atomic orbital electron populations 1.22786 0.77390 1.02981 1.02382 1.86172 1.22907 1.33358 1.85589 1.18285 0.87400 0.81586 0.74170 1.90955 1.65917 1.35131 1.45679 1.22503 0.94504 0.99034 1.28307 1.82662 0.93154 1.07240 1.70304 1.24881 1.04471 0.97847 1.08891 1.18895 0.94500 0.95185 1.03616 1.20398 0.95208 0.95419 1.02938 1.16987 0.89935 0.86273 0.89429 1.43811 1.55500 1.08958 1.25943 1.16959 0.82660 0.83331 0.80426 1.90660 1.40876 1.79516 1.34100 1.19965 1.28450 0.98676 1.09814 0.91283 1.25731 0.93840 0.99671 0.94071 1.70007 1.26921 1.33597 1.07338 0.86365 0.80444 0.81211 0.78419 1.19093 1.20422 1.19064 0.92281 0.92397 0.88530 0.81580 0.90185 0.92857 0.91263 0.76748 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.45 101.05 1.06 1.55 16 2 O -0.36 -5.95 10.23 -41.23 -0.42 -6.37 16 3 C 0.54 10.76 7.72 32.00 0.25 11.01 16 4 O -0.49 -11.11 15.45 -19.41 -0.30 -11.41 16 5 C -0.32 -6.38 6.29 -38.45 -0.24 -6.62 16 6 S 0.20 3.02 22.82 -107.50 -2.45 0.56 16 7 C -0.22 -3.48 10.65 29.06 0.31 -3.17 16 8 C -0.11 -2.05 5.45 -106.28 -0.58 -2.63 16 9 C -0.08 -1.52 8.75 36.01 0.31 -1.20 16 10 C 0.29 6.23 5.66 -84.75 -0.48 5.75 16 11 N -0.69 -16.53 3.69 -13.04 -0.05 -16.58 16 12 C 0.56 15.84 6.66 -14.91 -0.10 15.74 16 13 O -0.57 -17.86 13.31 5.14 0.07 -17.79 16 14 C -0.53 -15.09 9.31 -37.52 -0.35 -15.43 16 15 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 16 C 0.09 2.46 5.50 -17.35 -0.10 2.37 16 17 N -0.75 -22.01 11.73 55.56 0.65 -21.36 16 18 Si 0.91 20.03 29.56 -169.99 -5.02 15.01 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 23 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 24 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.17 2.01 8.06 -52.48 -0.42 1.58 16 26 H 0.08 1.68 7.88 -51.93 -0.41 1.27 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.42 7.22 -51.93 -0.37 1.05 16 29 H 0.40 8.73 8.65 -40.82 -0.35 8.37 16 30 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 LS Contribution 285.02 15.07 4.30 4.30 Total: -1.00 -34.54 285.02 -5.95 -40.49 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -2.79 Total: 5.82 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 0.08 Total: 7.35 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.60 Total: -37.94 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.65 Total: -35.57 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.45 Total: 0.56 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.54 -5.95 -40.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001026393.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.890 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds