Wall clock time and date at job start Mon Mar 30 2020 19:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.34968 * 116.99647 * 2 1 4 4 O 1.21691 * 120.00559 * 0.02562 * 3 2 1 5 5 C 1.41561 * 119.99663 * 179.97438 * 3 2 1 6 6 S 1.75808 * 125.50328 * 354.71467 * 5 3 2 7 7 C 1.70556 * 91.71963 * 180.02562 * 6 5 3 8 8 C 1.33468 * 111.29510 * 0.02562 * 7 6 5 9 9 C 1.50702 * 122.44464 * 179.97438 * 8 7 6 10 10 C 1.37882 * 125.50173 * 174.73381 * 5 3 2 11 11 N 1.38948 * 123.56291 * 0.02562 * 10 5 3 12 12 C 1.34774 * 119.99812 * 116.50794 * 11 10 5 13 13 O 1.21758 * 120.00543 * 4.99554 * 12 11 10 14 14 C 1.41777 * 119.99424 * 184.99434 * 12 11 10 15 15 H 1.07997 * 120.00080 * 0.02562 * 14 12 11 16 16 C 1.40144 * 119.99767 * 180.02562 * 14 12 11 17 17 N 1.30625 * 119.99957 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00204 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47371 * 59.99358 * 18 16 14 20 20 H 1.48491 * 109.47394 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46937 * 299.99825 * 18 16 14 22 22 H 1.09004 * 109.47512 * 299.99688 * 1 2 3 23 23 H 1.09003 * 109.47433 * 59.99596 * 1 2 3 24 24 H 1.09005 * 109.47218 * 179.97438 * 1 2 3 25 25 H 1.08003 * 124.34827 * 179.97438 * 7 6 5 26 26 H 1.08997 * 109.47139 * 277.21524 * 9 8 7 27 27 H 1.08997 * 109.46851 * 37.21270 * 9 8 7 28 28 H 1.08995 * 109.46874 * 157.21186 * 9 8 7 29 29 H 0.96998 * 119.99494 * 296.51428 * 11 10 5 30 30 H 0.97008 * 120.00091 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2026 0.0000 4 8 1.3789 2.2232 0.0005 5 6 3.4553 1.2767 0.0005 6 16 4.5495 -0.0930 0.1331 7 6 5.9157 0.9243 0.0468 8 6 5.5596 2.2050 -0.0728 9 6 6.5696 3.3194 -0.1693 10 6 4.1965 2.4348 -0.1024 11 7 3.6331 3.6994 -0.2215 12 6 3.8310 4.6189 0.7438 13 8 4.5766 4.3736 1.6746 14 6 3.1710 5.8718 0.6752 15 1 2.5094 6.0891 -0.1502 16 6 3.3772 6.8282 1.6786 17 7 4.1771 6.5650 2.6773 18 14 2.5072 8.4787 1.5888 19 1 1.0376 8.2646 1.5937 20 1 2.8905 9.3048 2.7617 21 1 2.9012 9.1786 0.3397 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 6.9376 0.5768 0.0850 26 1 6.9030 3.5952 0.8311 27 1 7.4240 2.9853 -0.7579 28 1 6.1121 4.1835 -0.6510 29 1 3.0973 3.9202 -0.9993 30 1 4.3201 7.2271 3.3717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001026393.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:25 Heat of formation + Delta-G solvation = -110.682612 kcal Electronic energy + Delta-G solvation = -18430.058558 eV Core-core repulsion = 15316.497429 eV Total energy + Delta-G solvation = -3113.561129 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.72126 -40.54309 -38.29522 -37.44659 -34.90700 -34.22259 -32.13484 -29.21992 -29.12567 -27.73368 -25.34455 -22.67984 -22.07681 -19.70065 -19.67712 -19.40890 -18.02272 -17.64728 -17.44390 -17.17173 -16.13732 -15.94762 -15.21696 -14.88657 -14.61849 -14.40953 -14.29409 -14.21040 -13.49731 -13.20491 -12.94438 -12.90342 -12.84139 -12.70469 -12.65419 -12.07825 -11.97854 -11.76687 -11.64302 -10.98184 -10.31575 -9.92193 -9.62149 -8.95084 -8.37002 -6.99504 -0.69858 0.53140 0.91517 1.20968 1.36824 1.39706 1.51720 1.80878 1.90797 2.21799 2.41396 3.04815 3.61212 3.99299 4.12114 4.24972 4.31373 4.33633 4.56519 4.65909 4.77623 4.84937 4.89482 5.22474 5.24435 5.34832 5.48110 5.89786 6.08974 6.31583 6.72089 6.75896 7.36589 8.41133 8.59801 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.020382 B = 0.006956 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.443603 B = 4024.055197 C = 5119.623870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.538 3.462 4 O -0.530 6.530 5 C -0.359 4.359 6 S 0.310 5.690 7 C -0.201 4.201 8 C -0.147 4.147 9 C -0.069 4.069 10 C 0.247 3.753 11 N -0.689 5.689 12 C 0.550 3.450 13 O -0.609 6.609 14 C -0.568 4.568 15 H 0.079 0.921 16 C 0.036 3.964 17 N -0.800 5.800 18 Si 0.996 3.004 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.251 1.251 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.143 0.857 25 H 0.211 0.789 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.037 0.963 29 H 0.400 0.600 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -12.893 -7.264 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.386 3.614 4 O -0.422 6.422 5 C -0.479 4.479 6 S 0.578 5.422 7 C -0.339 4.339 8 C -0.161 4.161 9 C -0.128 4.128 10 C 0.134 3.866 11 N -0.339 5.339 12 C 0.359 3.641 13 O -0.496 6.496 14 C -0.604 4.604 15 H 0.097 0.903 16 C -0.182 4.182 17 N -0.428 5.428 18 Si 0.815 3.185 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.174 1.174 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.161 0.839 25 H 0.228 0.772 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.235 0.765 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.278 -14.303 -6.271 15.620 hybrid contribution -0.735 2.680 -0.284 2.794 sum -1.013 -11.623 -6.555 13.382 Atomic orbital electron populations 1.23177 0.75233 1.05867 1.02078 1.86152 1.24965 1.31216 1.84843 1.18489 0.87714 0.81973 0.73259 1.90924 1.66923 1.36658 1.47663 1.22849 0.95538 1.01004 1.28460 1.82249 0.90065 1.03422 1.66489 1.25453 1.07184 0.96585 1.04667 1.18915 0.93481 0.96790 1.06950 1.20238 0.96494 0.94733 1.01363 1.17386 0.91428 0.85660 0.92138 1.43253 1.55553 1.09840 1.25233 1.17139 0.82108 0.84225 0.80637 1.90600 1.42466 1.80641 1.35880 1.20473 1.29239 0.99725 1.10923 0.90308 1.26921 0.94195 1.04109 0.93000 1.70142 1.28646 1.35583 1.08412 0.85093 0.78830 0.75232 0.79319 1.18536 1.19142 1.17440 0.93218 0.92205 0.83924 0.77181 0.93369 0.88616 0.94385 0.76456 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.45 113.37 1.18 1.89 16 2 O -0.35 -11.08 10.23 -58.85 -0.60 -11.68 16 3 C 0.54 21.47 7.72 68.64 0.53 22.00 16 4 O -0.53 -24.90 15.45 19.21 0.30 -24.61 16 5 C -0.36 -13.99 6.29 23.01 0.14 -13.84 16 6 S 0.31 8.27 22.82 -56.49 -1.29 6.98 16 7 C -0.20 -5.60 10.65 66.74 0.71 -4.89 16 8 C -0.15 -5.62 5.45 -20.94 -0.11 -5.73 16 9 C -0.07 -2.67 8.75 71.24 0.62 -2.05 16 10 C 0.25 10.93 5.66 37.94 0.21 11.15 16 11 N -0.69 -34.75 3.69 -313.35 -1.15 -35.90 16 12 C 0.55 33.00 6.66 85.12 0.57 33.57 16 13 O -0.61 -40.41 13.31 -4.53 -0.06 -40.47 16 14 C -0.57 -33.52 9.31 23.61 0.22 -33.30 16 15 H 0.08 4.30 7.85 -2.91 -0.02 4.28 16 16 C 0.04 2.03 5.50 85.34 0.47 2.49 16 17 N -0.80 -48.65 11.73 21.85 0.26 -48.39 16 18 Si 1.00 41.73 29.56 68.60 2.03 43.76 16 19 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 20 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 21 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 22 H 0.05 1.28 8.13 -2.38 -0.02 1.26 16 23 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 24 H 0.14 2.04 8.14 -2.38 -0.02 2.02 16 25 H 0.21 3.93 8.06 -2.91 -0.02 3.90 16 26 H 0.05 2.11 7.88 -2.39 -0.02 2.09 16 27 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.04 1.65 7.22 -2.39 -0.02 1.63 16 29 H 0.40 18.77 8.65 -92.71 -0.80 17.96 16 30 H 0.28 15.27 8.29 -92.70 -0.77 14.50 16 Total: -1.00 -80.59 285.02 4.41 -76.17 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.39 Total: 22.87 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 4.55 Total: 11.28 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -0.90 Total: -84.30 kcal Atomic # 8 Polarization: -76.39 SS G_CDS: -0.37 Total: -76.76 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 8.27 SS G_CDS: -1.29 Total: 6.98 kcal Total: -80.59 4.41 -76.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001026393.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.508 kcal (2) G-P(sol) polarization free energy of solvation -80.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds