Wall clock time and date at job start Mon Mar 30 2020 19:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99450 * 2 1 4 4 H 1.48498 * 109.46980 * 239.99604 * 3 2 1 5 5 H 1.48495 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46796 * 120.00168 * 3 2 1 7 7 C 1.37869 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99954 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00372 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47073 * 300.00317 * 9 7 2 11 11 O 1.42896 * 109.46681 * 60.00071 * 9 7 2 12 12 C 1.52996 * 109.47287 * 179.97438 * 9 7 2 13 13 N 1.46505 * 109.47016 * 180.02562 * 12 9 7 14 14 C 1.34770 * 119.99980 * 180.02562 * 13 12 9 15 15 O 1.21568 * 120.00344 * 359.97438 * 14 13 12 16 16 C 1.47769 * 120.00110 * 180.02562 * 14 13 12 17 17 C 1.39626 * 120.15542 * 359.97438 * 16 14 13 18 18 C 1.37895 * 119.86719 * 180.02562 * 17 16 14 19 19 C 1.38415 * 120.18507 * 359.97438 * 18 17 16 20 20 C 1.38275 * 120.31642 * 0.02562 * 19 18 17 21 21 C 1.38155 * 120.12912 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.09307 * 179.97438 * 21 20 19 23 23 H 0.96994 * 120.00494 * 0.02562 * 1 2 3 24 24 H 0.96703 * 113.99973 * 60.00195 * 11 9 7 25 25 H 1.09005 * 109.47240 * 60.00522 * 12 9 7 26 26 H 1.08999 * 109.47368 * 300.00192 * 12 9 7 27 27 H 0.96996 * 119.99999 * 0.02562 * 13 12 9 28 28 H 1.08000 * 120.06524 * 0.02562 * 17 16 14 29 29 H 1.08004 * 119.90618 * 179.97438 * 18 17 16 30 30 H 1.08002 * 119.84504 * 180.02562 * 19 18 17 31 31 H 1.07994 * 119.93482 * 179.72564 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 1 0.6249 -2.5572 0.8896 11 8 0.4293 -2.5746 -1.1670 12 6 2.2455 -3.6620 -0.0018 13 7 1.5131 -4.9308 -0.0024 14 6 2.1870 -6.0979 -0.0031 15 8 3.4027 -6.0979 -0.0036 16 6 1.4483 -7.3777 -0.0043 17 6 0.0520 -7.3816 -0.0042 18 6 -0.6313 -8.5793 -0.0048 19 6 0.0630 -9.7767 -0.0060 20 6 1.4457 -9.7817 -0.0060 21 6 2.1435 -8.5894 -0.0044 22 17 3.8795 -8.5968 -0.0038 23 1 -0.4850 0.8399 -0.0004 24 1 0.9211 -2.5290 -1.9984 25 1 2.8728 -3.6047 0.8878 26 1 2.8715 -3.6038 -0.8922 27 1 0.5431 -4.9309 -0.0024 28 1 -0.4917 -6.4484 -0.0037 29 1 -1.7114 -8.5831 -0.0043 30 1 -0.4778 -10.7116 -0.0068 31 1 1.9812 -10.7195 -0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002243960.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:35 Heat of formation + Delta-G solvation = -65.866569 kcal Electronic energy + Delta-G solvation = -17630.633167 eV Core-core repulsion = 14516.971701 eV Total energy + Delta-G solvation = -3113.661466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.04605 -38.25079 -36.36881 -36.11794 -33.64007 -32.20607 -31.48848 -30.83187 -28.48012 -25.24653 -23.60417 -22.64692 -20.96419 -20.26060 -18.08842 -17.12074 -16.38292 -15.78790 -15.07655 -15.04774 -14.65017 -14.61297 -14.18741 -14.05070 -13.87349 -13.03548 -12.98511 -12.63169 -12.04310 -11.65408 -11.50908 -11.46057 -11.10325 -11.06509 -10.91319 -10.89310 -10.21069 -9.28773 -9.25785 -9.18710 -8.89854 -8.66691 -8.46529 -8.32836 -6.10379 -4.28924 0.65570 0.99745 2.17084 2.96384 3.26665 3.31470 3.33553 3.56809 3.76673 4.34444 4.54404 4.64402 4.80055 5.06586 5.15184 5.18591 5.36552 5.57458 5.93449 5.96107 6.04891 6.13201 6.16738 6.28188 6.49302 6.70084 6.92706 7.54881 7.75129 7.95515 8.04479 8.58476 8.74462 9.23044 9.47452 10.94256 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.033926 B = 0.004177 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.125698 B = 6702.481880 C = 7434.826160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.081 3.919 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.574 4.574 8 H 0.060 0.940 9 C 0.220 3.780 10 H 0.062 0.938 11 O -0.566 6.566 12 C 0.093 3.907 13 N -0.709 5.709 14 C 0.541 3.459 15 O -0.526 6.526 16 C -0.122 4.122 17 C -0.074 4.074 18 C -0.125 4.125 19 C -0.090 4.090 20 C -0.125 4.125 21 C 0.011 3.989 22 Cl -0.034 7.034 23 H 0.262 0.738 24 H 0.349 0.651 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.400 0.600 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 -18.460 -0.249 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.721 3.279 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.612 4.612 8 H 0.078 0.922 9 C 0.163 3.837 10 H 0.080 0.920 11 O -0.369 6.369 12 C -0.030 4.030 13 N -0.360 5.360 14 C 0.326 3.674 15 O -0.404 6.404 16 C -0.126 4.126 17 C -0.093 4.093 18 C -0.143 4.143 19 C -0.108 4.108 20 C -0.144 4.144 21 C -0.017 4.017 22 Cl -0.005 7.005 23 H 0.072 0.928 24 H 0.193 0.807 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.235 0.765 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.185 -18.344 0.218 18.383 hybrid contribution 0.562 0.993 -0.339 1.190 sum -0.623 -17.351 -0.121 17.362 Atomic orbital electron populations 1.70053 1.05976 1.26810 1.46639 1.25012 0.94738 0.99265 0.93540 0.86650 0.79661 0.82722 0.78873 1.20018 1.21158 1.20029 1.21470 0.93385 0.90937 1.55380 0.92224 1.19628 0.88169 0.89518 0.86427 0.91987 1.86527 1.38587 1.96248 1.15575 1.22477 0.96565 0.82441 1.01552 1.46093 1.10734 1.05914 1.73292 1.18121 0.87485 0.83646 0.78143 1.90840 1.12803 1.87310 1.49424 1.20027 0.93862 0.93449 1.05261 1.21445 0.92301 0.99393 0.96193 1.21213 1.00674 0.91989 1.00443 1.21286 0.93376 0.98691 0.97459 1.21062 0.94456 0.96711 1.02131 1.21076 0.86563 0.93641 1.00469 1.98415 1.07257 1.98723 1.96055 0.92791 0.80682 0.91683 0.92158 0.76496 0.84346 0.84777 0.84841 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.50 12.84 55.43 0.71 -23.79 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.57 -15.26 8.76 -34.44 -0.30 -15.57 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.22 5.27 2.91 -27.88 -0.08 5.19 16 10 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 11 O -0.57 -13.44 12.47 -35.23 -0.44 -13.88 16 12 C 0.09 1.92 5.28 -4.04 -0.02 1.90 16 13 N -0.71 -12.59 5.40 -61.27 -0.33 -12.92 16 14 C 0.54 9.64 7.77 -12.37 -0.10 9.54 16 15 O -0.53 -10.88 13.97 5.31 0.07 -10.81 16 16 C -0.12 -1.77 5.88 -104.94 -0.62 -2.38 16 17 C -0.07 -0.86 9.54 -39.19 -0.37 -1.23 16 18 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 19 C -0.09 -0.76 10.04 -39.50 -0.40 -1.15 16 20 C -0.12 -1.27 9.82 -39.60 -0.39 -1.66 16 21 C 0.01 0.14 6.35 -39.07 -0.25 -0.11 16 22 Cl -0.03 -0.50 26.02 -51.86 -1.35 -1.85 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.35 7.51 9.04 45.56 0.41 7.92 16 25 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.40 6.40 6.38 -40.82 -0.26 6.14 16 28 H 0.14 1.44 6.41 -52.49 -0.34 1.11 16 29 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 30 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -31.30 289.80 -7.27 -38.57 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -2.26 Total: 9.45 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -3.02 Total: -4.89 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.38 Total: -36.71 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.37 Total: -24.69 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.35 Total: -1.85 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.30 -7.27 -38.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002243960.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.299 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds