Wall clock time and date at job start Mon Mar 30 2020 19:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00159 * 2 1 4 4 H 1.48504 * 109.46826 * 269.99846 * 3 2 1 5 5 H 1.48501 * 109.47222 * 29.99910 * 3 2 1 6 6 H 1.48504 * 109.47036 * 150.00138 * 3 2 1 7 7 C 1.37876 * 119.99436 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00024 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00192 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47147 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00376 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99893 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00448 * 180.02562 * 11 10 9 14 14 S 1.81403 * 109.47268 * 180.02562 * 13 11 10 15 15 C 1.76201 * 102.99849 * 179.97438 * 14 13 11 16 16 C 1.38890 * 120.08725 * 359.95439 * 15 14 13 17 17 C 1.38129 * 119.94815 * 180.02562 * 16 15 14 18 18 C 1.38295 * 120.11144 * 0.02562 * 17 16 15 19 19 C 1.38298 * 120.17224 * 0.02562 * 18 17 16 20 20 C 1.38258 * 120.05674 * 359.97358 * 19 18 17 21 21 F 1.35106 * 120.05825 * 180.02562 * 20 19 18 22 22 H 0.97000 * 119.99397 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46924 * 60.00305 * 9 7 2 24 24 H 1.08999 * 109.47011 * 300.00053 * 9 7 2 25 25 H 0.97008 * 119.99909 * 0.02562 * 10 9 7 26 26 H 1.09000 * 109.46967 * 60.00330 * 13 11 10 27 27 H 1.08999 * 109.47129 * 299.99980 * 13 11 10 28 28 H 1.08004 * 120.02607 * 0.04536 * 16 15 14 29 29 H 1.07999 * 119.94866 * 180.27536 * 17 16 15 30 30 H 1.07997 * 119.90794 * 179.97438 * 18 17 16 31 31 H 1.08007 * 119.97156 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 7 2.2028 -3.6128 0.0015 11 6 1.7536 -4.8834 0.0029 12 8 0.5612 -5.1050 0.0039 13 6 2.7328 -6.0289 0.0032 14 16 1.8257 -7.5999 0.0045 15 6 3.1143 -8.8016 0.0040 16 6 4.4431 -8.3976 0.0019 17 6 5.4510 -9.3421 0.0010 18 6 5.1392 -10.6894 0.0016 19 6 3.8177 -11.0971 0.0026 20 6 2.8032 -10.1577 0.0035 21 9 1.5122 -10.5559 0.0051 22 1 -0.4849 0.8401 -0.0004 23 1 0.6239 -2.5575 -0.8880 24 1 0.6246 -2.5562 0.8920 25 1 3.1566 -3.4356 0.0010 26 1 3.3600 -5.9704 0.8928 27 1 3.3588 -5.9720 -0.8872 28 1 4.6882 -7.3457 0.0013 29 1 6.4843 -9.0279 0.0038 30 1 5.9299 -11.4251 0.0004 31 1 3.5779 -12.1502 0.0027 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006402154.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:52 Heat of formation + Delta-G solvation = -60.292411 kcal Electronic energy + Delta-G solvation = -16815.608252 eV Core-core repulsion = 13716.604996 eV Total energy + Delta-G solvation = -3099.003256 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.063 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.00846 -39.00903 -38.89222 -34.33791 -32.49807 -31.73067 -30.68335 -29.97862 -26.90638 -23.40018 -23.11265 -22.48463 -20.03431 -18.46084 -17.29224 -16.97186 -16.54344 -15.93380 -15.81892 -15.45515 -15.26924 -15.05836 -14.44859 -14.03561 -13.68754 -13.33622 -13.17776 -12.78623 -12.65532 -12.32033 -12.04218 -11.71600 -11.42761 -11.01916 -10.93481 -10.37936 -10.21959 -10.08265 -9.47889 -9.35352 -9.12493 -8.81898 -8.04486 -7.46337 -6.22449 -4.30269 0.79086 0.89011 1.23207 2.27920 3.09758 3.20608 3.24898 3.26762 3.29018 3.87018 3.99124 4.29951 4.43772 4.61571 4.91154 4.96258 4.96673 5.06963 5.13924 5.32537 5.35491 5.68255 5.72027 5.87091 6.07457 6.53472 7.18589 7.25126 7.42319 7.55906 7.88789 8.43807 8.65584 8.90430 9.36223 10.87677 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.043484 B = 0.003304 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.763231 B = 8473.173093 C = 9096.489119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.703 5.703 11 C 0.515 3.485 12 O -0.536 6.536 13 C -0.155 4.155 14 S -0.005 6.005 15 C -0.138 4.138 16 C -0.113 4.113 17 C -0.109 4.109 18 C -0.105 4.105 19 C -0.135 4.135 20 C 0.112 3.888 21 F -0.129 7.129 22 H 0.267 0.733 23 H 0.030 0.970 24 H 0.030 0.970 25 H 0.392 0.608 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.801 -19.081 0.005 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.352 5.352 11 C 0.298 3.702 12 O -0.414 6.414 13 C -0.307 4.307 14 S 0.240 5.760 15 C -0.252 4.252 16 C -0.137 4.137 17 C -0.129 4.129 18 C -0.126 4.126 19 C -0.156 4.156 20 C 0.086 3.914 21 F -0.108 7.108 22 H 0.077 0.923 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.225 0.775 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.418 -19.085 0.012 21.744 hybrid contribution 2.173 1.135 -0.010 2.451 sum 12.591 -17.950 0.002 21.926 Atomic orbital electron populations 1.69976 1.06127 1.27451 1.48546 1.24958 0.94936 0.99509 0.94584 0.86391 0.79593 0.82525 0.78261 1.20413 1.20941 1.19723 1.21192 0.93273 0.90315 1.53670 0.91821 1.19193 0.88200 0.81612 0.98062 1.46390 1.11428 1.05482 1.71920 1.19399 0.88535 0.83759 0.78556 1.90730 1.16103 1.84222 1.50334 1.23980 1.03109 0.96181 1.07385 1.86598 1.04927 0.93888 1.90558 1.22396 0.99385 0.96647 1.06750 1.21126 0.90514 1.00532 1.01533 1.21136 0.99375 0.92853 0.99519 1.21008 0.95498 0.96173 0.99944 1.21079 0.92284 0.99401 1.02790 1.17082 0.79050 0.90821 1.04464 1.91534 1.34526 1.91019 1.93699 0.92331 0.95237 0.95223 0.77468 0.86787 0.86791 0.84880 0.85071 0.84931 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.72 13.29 55.43 0.74 -24.98 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.47 29.54 -169.99 -5.02 15.44 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.55 -14.46 9.28 -34.44 -0.32 -14.78 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.46 5.43 -5.19 -0.03 6.43 16 10 N -0.70 -14.13 5.55 -61.47 -0.34 -14.47 16 11 C 0.52 9.96 7.85 -10.99 -0.09 9.88 16 12 O -0.54 -12.79 15.86 5.55 0.09 -12.70 16 13 C -0.16 -2.11 4.82 36.00 0.17 -1.94 16 14 S -0.01 -0.08 20.67 -107.50 -2.22 -2.30 16 15 C -0.14 -1.72 6.11 -39.01 -0.24 -1.96 16 16 C -0.11 -1.12 9.36 -39.38 -0.37 -1.49 16 17 C -0.11 -0.87 10.04 -39.60 -0.40 -1.26 16 18 C -0.10 -0.79 10.04 -39.54 -0.40 -1.19 16 19 C -0.14 -1.24 10.02 -39.55 -0.40 -1.63 16 20 C 0.11 1.36 7.28 -39.24 -0.29 1.08 16 21 F -0.13 -1.78 16.76 2.25 0.04 -1.74 16 22 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.39 6.52 8.32 -40.82 -0.34 6.18 16 26 H 0.11 1.25 7.75 -51.92 -0.40 0.85 16 27 H 0.11 1.25 7.75 -51.92 -0.40 0.85 16 28 H 0.13 1.10 5.88 -52.48 -0.31 0.79 16 29 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 31 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 294.73 15.07 4.44 4.44 Total: -1.00 -32.45 294.73 -7.82 -40.27 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -3.10 Total: 1.25 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.44 Total: -5.21 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.40 Total: -39.46 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.22 Total: -2.30 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.45 -7.82 -40.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006402154.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.020 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds