Wall clock time and date at job start Mon Mar 30 2020 19:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47105 * 269.99803 * 3 2 1 5 5 H 1.48500 * 109.47426 * 30.00177 * 3 2 1 6 6 H 1.48503 * 109.47229 * 150.00288 * 3 2 1 7 7 C 1.37875 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00164 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46988 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99697 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00255 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99824 * 179.97438 * 11 10 9 14 14 O 1.42898 * 109.47083 * 180.02562 * 13 11 10 15 15 C 1.35929 * 117.00101 * 180.02562 * 14 13 11 16 16 C 1.38701 * 120.05648 * 359.95940 * 15 14 13 17 17 C 1.38153 * 119.95853 * 180.02562 * 16 15 14 18 18 C 1.38285 * 120.07157 * 0.02562 * 17 16 15 19 19 C 1.38238 * 120.11971 * 0.02562 * 18 17 16 20 20 C 1.38255 * 120.04624 * 359.94924 * 19 18 17 21 21 Cl 1.73604 * 120.04140 * 180.02562 * 20 19 18 22 22 H 0.96991 * 119.99978 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47159 * 60.00326 * 9 7 2 24 24 H 1.08996 * 109.47052 * 299.99463 * 9 7 2 25 25 H 0.97000 * 120.00122 * 0.02562 * 10 9 7 26 26 H 1.09004 * 109.46884 * 60.00422 * 13 11 10 27 27 H 1.08996 * 109.47098 * 300.00144 * 13 11 10 28 28 H 1.08003 * 120.02367 * 0.04181 * 16 15 14 29 29 H 1.08001 * 119.96476 * 180.29683 * 17 16 15 30 30 H 1.08006 * 119.93616 * 179.97438 * 18 17 16 31 31 H 1.08008 * 119.97717 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 1.7537 -4.8834 0.0029 12 8 0.5613 -5.1050 0.0039 13 6 2.7331 -6.0289 0.0021 14 8 2.0186 -7.2664 0.0033 15 6 2.7588 -8.4064 0.0033 16 6 4.1440 -8.3352 0.0013 17 6 4.8944 -9.4952 0.0007 18 6 4.2660 -10.7270 0.0017 19 6 2.8857 -10.8016 0.0026 20 6 2.1299 -9.6439 0.0037 21 17 0.3964 -9.7376 0.0055 22 1 -0.4849 0.8400 0.0004 23 1 0.6240 -2.5576 -0.8880 24 1 0.6248 -2.5564 0.8920 25 1 3.1567 -3.4355 0.0010 26 1 3.3610 -5.9706 0.8911 27 1 3.3583 -5.9716 -0.8889 28 1 4.6357 -7.3736 0.0004 29 1 5.9730 -9.4399 0.0040 30 1 4.8548 -11.6324 0.0008 31 1 2.3972 -11.7649 0.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016743995.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:44:02 Heat of formation + Delta-G solvation = -58.770130 kcal Electronic energy + Delta-G solvation = -17156.804173 eV Core-core repulsion = 14043.450432 eV Total energy + Delta-G solvation = -3113.353741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43459 -38.83035 -37.33053 -36.37698 -34.26464 -32.42873 -31.10336 -30.47139 -28.74275 -26.62959 -23.26498 -22.71238 -22.11831 -19.88855 -18.59117 -17.43633 -16.53105 -16.31270 -16.13959 -15.50859 -15.11517 -14.72390 -14.30295 -14.27926 -14.09413 -13.20771 -13.18825 -12.61622 -12.13010 -12.01535 -11.92681 -11.56617 -11.41603 -11.15289 -11.02600 -10.90565 -10.82559 -10.35837 -9.45616 -9.17240 -9.13529 -8.79600 -8.37188 -7.99700 -6.20783 -4.28537 0.89662 1.08885 2.13145 2.76003 3.16588 3.21714 3.28010 3.30229 3.38704 4.07622 4.32093 4.53036 4.59165 4.80126 4.98098 5.03695 5.11829 5.15832 5.19369 5.33265 5.46513 5.83954 5.92946 6.13709 6.37128 7.07022 7.23709 7.31986 7.45079 7.59489 7.90835 8.48624 8.70276 8.95931 9.37920 10.89383 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.037723 B = 0.003417 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.071250 B = 8192.010477 C = 8913.634983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.500 3.500 12 O -0.528 6.528 13 C 0.038 3.962 14 O -0.274 6.274 15 C 0.144 3.856 16 C -0.203 4.203 17 C -0.075 4.075 18 C -0.153 4.153 19 C -0.074 4.074 20 C -0.071 4.071 21 Cl -0.052 7.052 22 H 0.267 0.733 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.392 0.608 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.400 -19.704 0.006 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.358 5.358 11 C 0.282 3.718 12 O -0.405 6.405 13 C -0.041 4.041 14 O -0.185 6.185 15 C 0.096 3.904 16 C -0.222 4.222 17 C -0.093 4.093 18 C -0.171 4.171 19 C -0.092 4.092 20 C -0.098 4.098 21 Cl -0.023 7.023 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.224 0.776 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.958 -19.676 0.011 22.052 hybrid contribution 1.019 1.115 -0.008 1.510 sum 10.976 -18.562 0.003 21.564 Atomic orbital electron populations 1.69972 1.06129 1.27436 1.48583 1.24958 0.94932 0.99503 0.94617 0.86390 0.79585 0.82536 0.78244 1.20428 1.20968 1.19724 1.21196 0.93280 0.90304 1.53608 0.91800 1.19172 0.88170 0.81516 0.98042 1.46346 1.11386 1.05345 1.72697 1.19824 0.89135 0.83891 0.78930 1.90734 1.16296 1.84425 1.49047 1.22712 0.95230 0.82784 1.03380 1.86298 1.33508 1.11337 1.87368 1.18840 0.90059 0.86122 0.95362 1.21306 0.91787 1.00521 1.08537 1.21046 1.00128 0.91729 0.96421 1.21005 0.93683 0.98164 1.04271 1.20924 0.93738 0.96597 0.97978 1.20254 0.86135 0.92092 1.11352 1.98393 1.08389 1.98515 1.96971 0.92344 0.95278 0.95266 0.77569 0.89209 0.89212 0.84383 0.85150 0.85085 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.55 -14.49 9.28 -34.44 -0.32 -14.81 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 10 N -0.71 -14.34 5.55 -61.47 -0.34 -14.68 16 11 C 0.50 9.94 7.91 -10.98 -0.09 9.85 16 12 O -0.53 -13.22 16.50 -14.36 -0.24 -13.46 16 13 C 0.04 0.53 5.22 36.01 0.19 0.72 16 14 O -0.27 -4.46 9.13 -39.43 -0.36 -4.82 16 15 C 0.14 1.92 6.68 -39.20 -0.26 1.66 16 16 C -0.20 -2.06 9.04 -39.44 -0.36 -2.42 16 17 C -0.08 -0.62 10.04 -39.60 -0.40 -1.02 16 18 C -0.15 -1.23 10.04 -39.56 -0.40 -1.63 16 19 C -0.07 -0.71 9.83 -39.58 -0.39 -1.10 16 20 C -0.07 -0.90 6.33 -39.36 -0.25 -1.15 16 21 Cl -0.05 -0.72 28.51 -51.86 -1.48 -2.20 16 22 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.39 6.48 8.32 -40.82 -0.34 6.14 16 26 H 0.09 0.99 7.66 -51.93 -0.40 0.60 16 27 H 0.09 0.99 7.66 -51.93 -0.40 0.60 16 28 H 0.14 1.12 6.30 -52.48 -0.33 0.79 16 29 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 31 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 295.39 15.07 4.45 4.45 Total: -1.00 -33.41 295.39 -7.76 -41.17 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -3.11 Total: 0.86 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.40 Total: -1.72 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.40 Total: -39.77 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.60 Total: -18.27 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.48 Total: -2.20 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.41 -7.76 -41.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016743995.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.604 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds