Wall clock time and date at job start Mon Mar 30 2020 19:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47105 * 269.99803 * 3 2 1 5 5 H 1.48500 * 109.47426 * 30.00177 * 3 2 1 6 6 H 1.48503 * 109.47229 * 150.00288 * 3 2 1 7 7 C 1.37875 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00164 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46988 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99697 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00255 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99824 * 179.97438 * 11 10 9 14 14 O 1.42898 * 109.47083 * 180.02562 * 13 11 10 15 15 C 1.35929 * 117.00101 * 180.02562 * 14 13 11 16 16 C 1.38701 * 120.05648 * 359.95940 * 15 14 13 17 17 C 1.38153 * 119.95853 * 180.02562 * 16 15 14 18 18 C 1.38285 * 120.07157 * 0.02562 * 17 16 15 19 19 C 1.38238 * 120.11971 * 0.02562 * 18 17 16 20 20 C 1.38255 * 120.04624 * 359.94924 * 19 18 17 21 21 Cl 1.73604 * 120.04140 * 180.02562 * 20 19 18 22 22 H 0.96991 * 119.99978 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47159 * 60.00326 * 9 7 2 24 24 H 1.08996 * 109.47052 * 299.99463 * 9 7 2 25 25 H 0.97000 * 120.00122 * 0.02562 * 10 9 7 26 26 H 1.09004 * 109.46884 * 60.00422 * 13 11 10 27 27 H 1.08996 * 109.47098 * 300.00144 * 13 11 10 28 28 H 1.08003 * 120.02367 * 0.04181 * 16 15 14 29 29 H 1.08001 * 119.96476 * 180.29683 * 17 16 15 30 30 H 1.08006 * 119.93616 * 179.97438 * 18 17 16 31 31 H 1.08008 * 119.97717 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 1.7537 -4.8834 0.0029 12 8 0.5613 -5.1050 0.0039 13 6 2.7331 -6.0289 0.0021 14 8 2.0186 -7.2664 0.0033 15 6 2.7588 -8.4064 0.0033 16 6 4.1440 -8.3352 0.0013 17 6 4.8944 -9.4952 0.0007 18 6 4.2660 -10.7270 0.0017 19 6 2.8857 -10.8016 0.0026 20 6 2.1299 -9.6439 0.0037 21 17 0.3964 -9.7376 0.0055 22 1 -0.4849 0.8400 0.0004 23 1 0.6240 -2.5576 -0.8880 24 1 0.6248 -2.5564 0.8920 25 1 3.1567 -3.4355 0.0010 26 1 3.3610 -5.9706 0.8911 27 1 3.3583 -5.9716 -0.8889 28 1 4.6357 -7.3736 0.0004 29 1 5.9730 -9.4399 0.0040 30 1 4.8548 -11.6324 0.0008 31 1 2.3972 -11.7649 0.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016743995.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:44:02 Heat of formation + Delta-G solvation = -81.722462 kcal Electronic energy + Delta-G solvation = -17157.799461 eV Core-core repulsion = 14043.450432 eV Total energy + Delta-G solvation = -3114.349029 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.44408 -40.28955 -38.37017 -37.31382 -36.19094 -34.41727 -31.88222 -31.41557 -30.15818 -28.29192 -24.82870 -23.67810 -23.20913 -21.54433 -19.53257 -19.07716 -17.74594 -17.45758 -17.38168 -16.88190 -16.74894 -15.90450 -15.81812 -15.49307 -14.85439 -14.70651 -14.37534 -14.09383 -13.77261 -13.72231 -12.94067 -12.82832 -12.72335 -12.53082 -12.24997 -12.17714 -12.09908 -11.76805 -11.50087 -10.86871 -10.81894 -9.92691 -9.88569 -9.22287 -8.29624 -6.46806 0.16166 0.33059 1.22195 1.43948 1.46782 1.57331 1.59225 1.64862 2.37227 2.66481 2.78691 3.05720 3.65324 3.80248 3.99485 4.04959 4.10700 4.25225 4.36843 4.46674 4.80582 5.08056 5.12567 5.20665 5.28928 5.42575 5.46140 5.61606 5.72226 5.81822 6.21608 6.63153 6.80867 7.21574 7.39660 8.82752 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.037723 B = 0.003417 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.071250 B = 8192.010477 C = 8913.634983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.252 1.252 7 C -0.555 4.555 8 H 0.089 0.911 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.494 3.506 12 O -0.590 6.590 13 C 0.052 3.948 14 O -0.314 6.314 15 C 0.112 3.888 16 C -0.202 4.202 17 C -0.069 4.069 18 C -0.142 4.142 19 C -0.078 4.078 20 C -0.097 4.097 21 Cl -0.081 7.081 22 H 0.269 0.731 23 H -0.012 1.012 24 H -0.012 1.012 25 H 0.414 0.586 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.161 0.839 29 H 0.167 0.833 30 H 0.166 0.834 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.829 -20.348 0.014 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.176 1.176 7 C -0.593 4.593 8 H 0.107 0.893 9 C 0.143 3.857 10 N -0.349 5.349 11 C 0.280 3.720 12 O -0.470 6.470 13 C -0.026 4.026 14 O -0.227 6.227 15 C 0.065 3.935 16 C -0.220 4.220 17 C -0.087 4.087 18 C -0.160 4.160 19 C -0.096 4.096 20 C -0.124 4.124 21 Cl -0.053 7.053 22 H 0.077 0.923 23 H 0.006 0.994 24 H 0.006 0.994 25 H 0.251 0.749 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.179 0.821 29 H 0.185 0.815 30 H 0.183 0.817 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 14.461 -20.356 0.019 24.970 hybrid contribution -0.305 1.159 -0.012 1.198 sum 14.156 -19.198 0.006 23.853 Atomic orbital electron populations 1.70147 1.08405 1.28628 1.49934 1.26106 0.95763 1.04062 0.93842 0.85120 0.78527 0.76758 0.78585 1.19623 1.21216 1.17581 1.21618 0.94502 0.90225 1.52924 0.89259 1.18600 0.88682 0.84099 0.94282 1.45987 1.11630 1.04601 1.72677 1.20918 0.89459 0.84952 0.76627 1.90705 1.19516 1.85384 1.51441 1.22628 0.92984 0.80033 1.06907 1.86221 1.35434 1.12489 1.88538 1.19140 0.91412 0.85042 0.97862 1.21629 0.90304 1.02514 1.07593 1.21530 1.01873 0.90917 0.94365 1.21479 0.92970 0.99736 1.01843 1.21228 0.94656 0.96261 0.97457 1.20625 0.84935 0.93352 1.13490 1.98374 1.11061 1.98581 1.97244 0.92254 0.99385 0.99361 0.74935 0.85412 0.85421 0.82128 0.81535 0.81657 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.99 41.58 29.54 68.60 2.03 43.61 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.55 -29.52 9.28 25.60 0.24 -29.28 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.27 14.49 5.43 85.63 0.46 14.95 16 10 N -0.70 -28.38 5.55 -466.77 -2.59 -30.97 16 11 C 0.49 19.97 7.91 87.66 0.69 20.67 16 12 O -0.59 -31.24 16.50 15.99 0.26 -30.97 16 13 C 0.05 1.38 5.22 71.24 0.37 1.75 16 14 O -0.31 -10.17 9.13 -73.72 -0.67 -10.84 16 15 C 0.11 2.84 6.68 22.52 0.15 2.99 16 16 C -0.20 -3.38 9.04 22.36 0.20 -3.18 16 17 C -0.07 -0.81 10.04 22.26 0.22 -0.59 16 18 C -0.14 -1.70 10.04 22.28 0.22 -1.47 16 19 C -0.08 -1.34 9.83 22.27 0.22 -1.12 16 20 C -0.10 -2.43 6.33 22.41 0.14 -2.29 16 21 Cl -0.08 -2.38 28.51 -2.72 -0.08 -2.46 16 22 H 0.27 15.14 8.31 -92.72 -0.77 14.37 16 23 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 24 H -0.01 -0.72 8.14 -2.39 -0.02 -0.73 16 25 H 0.41 12.94 8.32 -92.71 -0.77 12.17 16 26 H 0.13 2.38 7.66 -2.39 -0.02 2.37 16 27 H 0.13 2.38 7.66 -2.39 -0.02 2.37 16 28 H 0.16 1.83 6.30 -2.91 -0.02 1.81 16 29 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 30 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 31 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -79.00 295.39 3.02 -75.99 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.39 Total: 8.62 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 3.39 Total: 2.99 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -2.30 Total: -86.93 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -0.41 Total: -41.82 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.08 Total: -2.46 kcal Total: -79.00 3.02 -75.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016743995.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.737 kcal (2) G-P(sol) polarization free energy of solvation -79.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds