Wall clock time and date at job start Mon Mar 30 2020 19:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42100 * 110.54270 * 2 1 4 4 O 1.42101 * 110.53775 * 136.75461 * 2 1 3 5 5 C 1.76204 * 104.44874 * 248.37522 * 2 1 3 6 6 C 1.38329 * 119.91427 * 269.73055 * 5 2 1 7 7 C 1.38071 * 120.07833 * 179.76567 * 6 5 2 8 8 C 1.39019 * 119.91676 * 0.52937 * 7 6 5 9 9 N 1.39530 * 120.08785 * 179.70191 * 8 7 6 10 10 C 1.34770 * 120.00673 * 213.41466 * 9 8 7 11 11 O 1.21742 * 119.99782 * 5.26800 * 10 9 8 12 12 C 1.46172 * 120.00421 * 185.27177 * 10 9 8 13 13 H 1.07994 * 119.99897 * 359.97438 * 12 10 9 14 14 C 1.40119 * 119.99941 * 179.97438 * 12 10 9 15 15 N 1.30638 * 120.00398 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99958 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47233 * 89.99728 * 16 14 12 18 18 H 1.48500 * 109.47524 * 210.00296 * 16 14 12 19 19 H 1.48505 * 109.46955 * 329.99836 * 16 14 12 20 20 C 1.39032 * 119.83450 * 359.71925 * 8 7 6 21 21 C 1.38062 * 119.91645 * 0.02562 * 20 8 7 22 22 H 1.08998 * 109.47421 * 171.62259 * 1 2 3 23 23 H 1.09007 * 109.46730 * 51.61933 * 1 2 3 24 24 H 1.08999 * 109.47057 * 291.62597 * 1 2 3 25 25 H 1.08000 * 119.95828 * 359.97438 * 6 5 2 26 26 H 1.07994 * 120.03964 * 180.25121 * 7 6 5 27 27 H 0.97006 * 119.99703 * 33.40678 * 9 8 7 28 28 H 0.96999 * 119.99889 * 180.02562 * 15 14 12 29 29 H 1.07998 * 120.03982 * 179.97438 * 20 8 7 30 30 H 1.07999 * 119.96174 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 0.9117 5 6 2.2537 -0.6288 -1.5862 6 6 2.4313 -1.9891 -1.7641 7 6 2.7711 -2.4860 -3.0066 8 6 2.9455 -1.6163 -4.0771 9 7 3.2949 -2.1140 -5.3329 10 6 4.0858 -1.3894 -6.1489 11 8 4.5734 -0.3458 -5.7548 12 6 4.3582 -1.8564 -7.5069 13 1 3.9260 -2.7823 -7.8564 14 6 5.1801 -1.1027 -8.3553 15 7 5.7033 0.0171 -7.9325 16 14 5.5275 -1.6991 -10.0912 17 1 4.4990 -1.1582 -11.0156 18 1 6.8709 -1.2302 -10.5162 19 1 5.4889 -3.1834 -10.1216 20 6 2.7711 -0.2493 -3.8932 21 6 2.4262 0.2396 -2.6490 22 1 -0.3634 -1.0167 -0.1497 23 1 -0.3633 0.6381 -0.8057 24 1 -0.3633 0.3787 0.9553 25 1 2.3007 -2.6635 -0.9307 26 1 2.9056 -3.5484 -3.1457 27 1 2.9687 -2.9817 -5.6187 28 1 6.2720 0.5390 -8.5200 29 1 2.9062 0.4293 -4.7224 30 1 2.2910 1.3014 -2.5052 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019473090.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:44:09 Heat of formation + Delta-G solvation = -110.695599 kcal Electronic energy + Delta-G solvation = -17742.595147 eV Core-core repulsion = 14629.033454 eV Total energy + Delta-G solvation = -3113.561692 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.055 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.94784 -38.85124 -38.03381 -36.87519 -35.47210 -34.61835 -31.94299 -31.02810 -30.13254 -28.36094 -24.36029 -23.81795 -21.82150 -19.91628 -19.59700 -18.74424 -17.83993 -17.64610 -17.04022 -16.81609 -16.08858 -15.71097 -15.52119 -14.88226 -14.74127 -14.28256 -14.18011 -13.92843 -13.84994 -13.64596 -13.21690 -13.04968 -12.94765 -12.83002 -12.80250 -12.29932 -12.06582 -12.02799 -11.58786 -11.29316 -10.97420 -10.14095 -9.87185 -9.11693 -8.43325 -7.02709 -0.72169 -0.03544 0.41343 1.38298 1.38899 1.55632 2.03132 2.16941 2.24513 2.59968 2.79262 3.16468 3.30868 3.48814 3.87804 4.00367 4.20178 4.26358 4.38529 4.59091 4.68019 4.95908 5.03884 5.06553 5.19890 5.20636 5.37372 5.68581 5.77384 6.07874 6.21036 6.71249 7.20436 8.24007 8.49754 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.052404 B = 0.004010 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.183836 B = 6981.311425 C = 7243.952420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.620 4.620 2 S 2.519 3.481 3 O -0.986 6.986 4 O -0.975 6.975 5 C -0.701 4.701 6 C -0.001 4.001 7 C -0.189 4.189 8 C 0.212 3.788 9 N -0.690 5.690 10 C 0.524 3.476 11 O -0.605 6.605 12 C -0.562 4.562 13 H 0.097 0.903 14 C 0.029 3.971 15 N -0.812 5.812 16 Si 1.004 2.996 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.246 1.246 20 C -0.183 4.183 21 C -0.011 4.011 22 H 0.157 0.843 23 H 0.148 0.852 24 H 0.156 0.844 25 H 0.172 0.828 26 H 0.156 0.844 27 H 0.413 0.587 28 H 0.279 0.721 29 H 0.104 0.896 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.120 -5.153 10.362 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.774 4.774 2 S 2.702 3.298 3 O -0.984 6.984 4 O -0.972 6.972 5 C -0.788 4.788 6 C -0.020 4.020 7 C -0.211 4.211 8 C 0.112 3.888 9 N -0.333 5.333 10 C 0.332 3.668 11 O -0.490 6.490 12 C -0.597 4.597 13 H 0.115 0.885 14 C -0.188 4.188 15 N -0.441 5.441 16 Si 0.822 3.178 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.169 1.169 20 C -0.205 4.205 21 C -0.030 4.030 22 H 0.175 0.825 23 H 0.166 0.834 24 H 0.174 0.826 25 H 0.189 0.811 26 H 0.174 0.826 27 H 0.249 0.751 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.019 -4.029 11.115 16.860 hybrid contribution 0.097 -0.448 -1.867 1.922 sum -11.923 -4.477 9.249 15.740 Atomic orbital electron populations 1.30001 1.19171 1.14422 1.13834 1.04509 0.80036 0.72756 0.72530 1.93517 1.80006 1.38494 1.86344 1.93509 1.79867 1.62179 1.61657 1.30545 1.23293 1.02919 1.22018 1.21021 0.90626 0.93422 0.96959 1.21293 1.07693 1.00608 0.91528 1.18584 0.89992 0.93523 0.86675 1.43927 1.51400 1.23300 1.14656 1.18842 0.77886 0.83640 0.86470 1.90627 1.54988 1.26640 1.76748 1.21431 1.32289 1.10258 0.95702 0.88475 1.27049 0.92860 0.93584 1.05279 1.70143 1.23343 1.12380 1.38210 0.84922 0.78196 0.80038 0.74615 1.18451 1.19865 1.16898 1.21295 1.04794 0.95401 0.99018 1.20831 0.91769 0.99835 0.90610 0.82459 0.83366 0.82603 0.81093 0.82633 0.75064 0.91090 0.87819 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -5.42 10.80 113.37 1.22 -4.20 16 2 S 2.52 53.93 5.80 -56.49 -0.33 53.60 16 3 O -0.99 -29.48 17.12 -127.65 -2.19 -31.67 16 4 O -0.97 -25.92 17.11 -127.65 -2.18 -28.11 16 5 C -0.70 -19.78 5.66 22.31 0.13 -19.66 16 6 C 0.00 -0.03 9.46 22.25 0.21 0.18 16 7 C -0.19 -5.89 9.97 22.42 0.22 -5.66 16 8 C 0.21 8.65 6.28 38.29 0.24 8.89 16 9 N -0.69 -30.24 5.32 -307.55 -1.64 -31.87 16 10 C 0.52 29.33 7.47 86.30 0.65 29.97 16 11 O -0.60 -39.21 12.70 -4.48 -0.06 -39.26 16 12 C -0.56 -30.15 9.54 24.79 0.24 -29.92 16 13 H 0.10 4.56 7.85 -2.91 -0.02 4.53 16 14 C 0.03 1.54 5.50 85.33 0.47 2.01 16 15 N -0.81 -48.01 11.82 21.85 0.26 -47.75 16 16 Si 1.00 38.77 29.56 68.60 2.03 40.80 16 17 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 18 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 20 C -0.18 -7.94 8.65 22.42 0.19 -7.75 16 21 C -0.01 -0.38 9.46 22.25 0.21 -0.17 16 22 H 0.16 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.17 3.33 7.56 -2.91 -0.02 3.31 16 26 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 27 H 0.41 14.69 8.79 -92.70 -0.82 13.88 16 28 H 0.28 14.92 8.29 -92.71 -0.77 14.15 16 29 H 0.10 5.33 6.42 -2.91 -0.02 5.31 16 30 H 0.15 4.53 7.56 -2.91 -0.02 4.51 16 Total: -1.00 -85.31 282.49 0.05 -85.26 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.37 Total: 25.29 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 3.78 Total: -26.29 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -1.38 Total: -79.62 kcal Atomic # 8 Polarization: -94.61 SS G_CDS: -4.43 Total: -99.03 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Atomic # 16 Polarization: 53.93 SS G_CDS: -0.33 Total: 53.60 kcal Total: -85.31 0.05 -85.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019473090.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.435 kcal (2) G-P(sol) polarization free energy of solvation -85.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds