Wall clock time and date at job start Mon Mar 30 2020 19:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 120.00104 * 2 1 4 4 C 1.50698 * 109.46978 * 270.00223 * 3 2 1 5 5 H 1.08000 * 120.00110 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99822 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00024 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99782 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47352 * 90.00023 * 8 6 4 10 10 H 1.48503 * 109.46895 * 209.99696 * 8 6 4 11 11 H 1.48497 * 109.47357 * 329.99878 * 8 6 4 12 12 C 1.34781 * 120.00369 * 180.02562 * 2 1 3 13 13 O 1.21595 * 119.99961 * 184.91200 * 12 2 1 14 14 C 1.47472 * 119.99618 * 4.91424 * 12 2 1 15 15 C 1.39746 * 120.18241 * 306.95034 * 14 12 2 16 16 C 1.37726 * 119.92384 * 179.97438 * 15 14 12 17 17 C 1.38698 * 120.28931 * 359.97438 * 16 15 14 18 18 Cl 1.73598 * 119.82170 * 179.97438 * 17 16 15 19 19 C 1.38212 * 120.35904 * 0.02562 * 17 16 15 20 20 C 1.38634 * 120.07369 * 359.97438 * 19 17 16 21 21 O 1.35657 * 120.14415 * 180.28139 * 20 19 17 22 22 H 1.09006 * 109.47256 * 305.45133 * 1 2 3 23 23 H 1.08993 * 109.47612 * 65.45414 * 1 2 3 24 24 H 1.09004 * 109.47082 * 185.45709 * 1 2 3 25 25 H 1.08998 * 109.46853 * 30.00370 * 3 2 1 26 26 H 1.08996 * 109.47103 * 150.00079 * 3 2 1 27 27 H 0.96994 * 119.99868 * 180.02562 * 7 6 4 28 28 H 1.07999 * 120.03702 * 359.97438 * 15 14 12 29 29 H 1.08001 * 119.85246 * 180.02562 * 16 15 14 30 30 H 1.07999 * 119.96085 * 179.97438 * 19 17 16 31 31 H 0.96700 * 113.99646 * 269.72414 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5524 3.6186 -0.6731 8 14 3.4366 3.4176 -3.4339 9 1 2.3062 4.2602 -3.9002 10 1 4.6966 4.2010 -3.4966 11 1 3.5539 2.2207 -4.3050 12 6 2.1389 -1.1672 -0.0005 13 8 3.3515 -1.1691 0.0896 14 6 1.4056 -2.4419 -0.1105 15 6 0.3570 -2.7273 0.7680 16 6 -0.3246 -3.9192 0.6601 17 6 0.0247 -4.8388 -0.3176 18 17 -0.8422 -6.3377 -0.4422 19 6 1.0599 -4.5688 -1.1927 20 6 1.7560 -3.3737 -1.0976 21 8 2.7686 -3.1047 -1.9593 22 1 -0.3634 0.5961 0.8372 23 1 -0.3634 0.4269 -0.9347 24 1 -0.3633 -1.0230 0.0977 25 1 1.6084 2.0284 0.5139 26 1 3.1499 1.1384 0.5138 27 1 4.0286 4.4448 -0.8504 28 1 0.0813 -2.0139 1.5306 29 1 -1.1352 -4.1383 1.3394 30 1 1.3267 -5.2896 -1.9513 31 1 3.6361 -3.4011 -1.6516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833801.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:44:12 Heat of formation + Delta-G solvation = -73.472731 kcal Electronic energy + Delta-G solvation = -18065.372370 eV Core-core repulsion = 14951.381076 eV Total energy + Delta-G solvation = -3113.991294 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62118 -39.71675 -38.21818 -37.22696 -36.58575 -34.78383 -32.40423 -31.06955 -29.60914 -27.52760 -25.67879 -24.04281 -23.63716 -20.79942 -19.41920 -18.73088 -18.31433 -17.57897 -17.09508 -16.98758 -16.38413 -15.93271 -15.62884 -15.23948 -14.71495 -14.36833 -14.16396 -13.92620 -13.74122 -13.43909 -13.17478 -13.08438 -12.85810 -12.61337 -12.24751 -12.17688 -12.00237 -11.89195 -11.74489 -10.81645 -10.66040 -9.99971 -9.77280 -9.48220 -8.25150 -6.39715 -0.33928 0.04725 0.95995 1.35074 1.37949 1.48541 1.67760 2.13820 2.38033 2.50986 3.04486 3.10927 3.51953 3.69648 3.97883 4.14995 4.32684 4.33231 4.63780 4.68931 4.82184 4.90768 4.98839 5.01756 5.13982 5.19854 5.44279 5.50671 5.77289 6.02554 6.61202 6.62173 6.69585 7.20244 7.35559 8.82178 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.033255 B = 0.004602 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.765382 B = 6082.317526 C = 6376.048470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.600 5.600 3 C 0.259 3.741 4 C -0.546 4.546 5 H 0.047 0.953 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.548 3.452 13 O -0.587 6.587 14 C -0.162 4.162 15 C -0.060 4.060 16 C -0.110 4.110 17 C -0.003 4.003 18 Cl -0.048 7.048 19 C -0.138 4.138 20 C 0.150 3.850 21 O -0.505 6.505 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.106 0.894 25 H 0.030 0.970 26 H 0.004 0.996 27 H 0.269 0.731 28 H 0.164 0.836 29 H 0.177 0.823 30 H 0.160 0.840 31 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.733 -18.161 2.394 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.329 5.329 3 C 0.138 3.862 4 C -0.584 4.584 5 H 0.066 0.934 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.791 3.209 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.201 1.201 12 C 0.337 3.663 13 O -0.468 6.468 14 C -0.166 4.166 15 C -0.079 4.079 16 C -0.128 4.128 17 C -0.031 4.031 18 Cl -0.019 7.019 19 C -0.157 4.157 20 C 0.104 3.896 21 O -0.318 6.318 22 H 0.099 0.901 23 H 0.071 0.929 24 H 0.124 0.876 25 H 0.048 0.952 26 H 0.022 0.978 27 H 0.078 0.922 28 H 0.182 0.818 29 H 0.195 0.805 30 H 0.177 0.823 31 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -11.545 -17.843 2.139 21.360 hybrid contribution 1.032 0.480 -0.653 1.313 sum -10.513 -17.363 1.485 20.352 Atomic orbital electron populations 1.22301 0.78050 1.04682 1.02790 1.48066 1.08451 1.06192 1.70231 1.18821 0.91331 0.79875 0.96188 1.21648 1.37179 1.06715 0.92907 0.93440 1.25813 0.94727 0.96261 1.01994 1.70035 1.38810 1.14728 1.32942 0.85431 0.78271 0.78143 0.79073 1.18707 1.20225 1.20126 1.18606 0.86865 0.84491 0.76356 1.90701 1.15845 1.87956 1.52345 1.20542 1.00767 0.95343 0.99967 1.21376 0.91674 0.97466 0.97337 1.21293 1.01475 0.91619 0.98416 1.20980 0.94932 0.89625 0.97520 1.98393 1.75058 1.30840 1.97565 1.21304 0.96939 0.96347 1.01141 1.18405 0.91257 0.91432 0.88494 1.84692 1.19281 1.83832 1.44031 0.90081 0.92944 0.87551 0.95198 0.97813 0.92243 0.81846 0.80531 0.82256 0.72881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.00 10.03 127.77 1.28 3.28 16 2 N -0.60 -26.53 2.86 -855.00 -2.44 -28.97 16 3 C 0.26 14.27 5.24 85.63 0.45 14.72 16 4 C -0.55 -32.41 9.39 25.60 0.24 -32.17 16 5 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 6 C 0.01 0.67 5.46 84.66 0.46 1.13 16 7 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 8 Si 0.97 45.77 29.54 68.60 2.03 47.80 16 9 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 C 0.55 24.11 6.85 86.68 0.59 24.70 16 13 O -0.59 -31.14 16.27 0.20 0.00 -31.13 16 14 C -0.16 -5.20 5.06 -20.01 -0.10 -5.30 16 15 C -0.06 -1.32 7.33 22.51 0.17 -1.16 16 16 C -0.11 -1.83 9.80 22.26 0.22 -1.61 16 17 C 0.00 -0.06 6.32 22.37 0.14 0.08 16 18 Cl -0.05 -0.74 28.94 -2.72 -0.08 -0.82 16 19 C -0.14 -3.06 9.75 22.36 0.22 -2.84 16 20 C 0.15 4.48 6.70 22.84 0.15 4.63 16 21 O -0.50 -16.71 12.67 -85.52 -1.08 -17.79 16 22 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.11 2.58 3.92 -2.39 -0.01 2.57 16 25 H 0.03 1.64 8.07 -2.39 -0.02 1.63 16 26 H 0.00 0.24 7.36 -2.39 -0.02 0.22 16 27 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.16 2.95 7.09 -2.91 -0.02 2.93 16 29 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 31 H 0.41 10.81 9.06 -74.06 -0.67 10.14 16 Total: -1.00 -76.58 290.83 3.03 -73.55 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.50 Total: 7.94 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 3.82 Total: 5.45 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -2.16 Total: -84.99 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -1.08 Total: -48.93 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -76.58 3.03 -73.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833801.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.076 kcal (2) G-P(sol) polarization free energy of solvation -76.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds