Wall clock time and date at job start Mon Mar 30 2020 19:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46853 * 2 1 4 4 C 1.52999 * 109.47198 * 239.99957 * 2 1 3 5 5 C 1.52995 * 109.47405 * 177.17675 * 4 2 1 6 6 C 1.50692 * 109.47532 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00162 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00476 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99586 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00426 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47115 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46890 * 119.99711 * 10 8 6 13 13 H 1.48493 * 109.47245 * 239.99888 * 10 8 6 14 14 N 1.46902 * 109.46921 * 120.00132 * 2 1 3 15 15 C 1.47636 * 110.99996 * 56.39467 * 14 2 1 16 16 C 1.50807 * 108.03563 * 150.30630 * 15 14 2 17 17 C 1.53823 * 111.61907 * 95.06666 * 16 15 14 18 18 C 1.54265 * 112.02649 * 318.99802 * 17 16 15 19 19 C 1.52998 * 108.76873 * 79.32657 * 18 17 16 20 20 C 1.52996 * 108.99078 * 197.74419 * 18 17 16 21 21 N 1.46905 * 109.46928 * 303.11388 * 20 18 17 22 22 C 1.50759 * 112.56290 * 318.60866 * 18 17 16 23 23 C 1.39780 * 111.00190 * 287.48701 * 14 2 1 24 24 H 1.09004 * 109.47519 * 59.99957 * 1 2 3 25 25 H 1.09004 * 109.47437 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47490 * 299.99708 * 1 2 3 27 27 H 1.08997 * 109.47085 * 297.18276 * 4 2 1 28 28 H 1.09003 * 109.46762 * 57.17871 * 4 2 1 29 29 H 1.09006 * 109.47062 * 300.00804 * 5 4 2 30 30 H 1.09000 * 109.46549 * 60.00108 * 5 4 2 31 31 H 0.96998 * 119.99559 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.74375 * 269.94410 * 15 14 2 33 33 H 1.09000 * 109.75044 * 30.61745 * 15 14 2 34 34 H 1.08994 * 109.05357 * 215.61858 * 16 15 14 35 35 H 1.09010 * 109.05496 * 334.59042 * 16 15 14 36 36 H 1.09000 * 108.97578 * 79.68223 * 17 16 15 37 37 H 1.08997 * 108.97975 * 198.40525 * 17 16 15 38 38 H 1.09001 * 109.47106 * 280.06874 * 19 18 17 39 39 H 1.08995 * 109.47049 * 40.07813 * 19 18 17 40 40 H 1.09004 * 109.46676 * 160.07913 * 19 18 17 41 41 H 1.09002 * 109.47668 * 63.11088 * 20 18 17 42 42 H 1.08999 * 109.47553 * 183.11357 * 20 18 17 43 43 H 1.00898 * 110.99957 * 180.02562 * 21 20 18 44 44 H 1.00907 * 110.99791 * 303.95256 * 21 20 18 45 45 H 1.09003 * 109.54388 * 333.00271 * 22 18 17 46 46 H 1.08994 * 109.54456 * 212.82486 * 22 18 17 47 47 H 1.08993 * 109.02577 * 68.55025 * 23 14 2 48 48 H 1.09003 * 109.01719 * 309.72183 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5683 -0.6600 -1.2853 6 6 4.0706 -1.3699 -2.5160 7 1 3.3699 -1.8194 -3.2040 8 6 5.4248 -1.4455 -2.7638 9 7 6.2782 -0.8977 -1.9263 10 14 6.0475 -2.3261 -4.2891 11 1 4.8941 -2.8512 -5.0630 12 1 6.8158 -1.3742 -5.1311 13 1 6.9276 -3.4521 -3.8859 14 7 2.0196 -0.6925 1.1994 15 6 1.4767 -2.0632 1.2776 16 6 2.4834 -2.9237 1.9991 17 6 2.1652 -3.0304 3.5003 18 6 1.7107 -1.6805 4.0928 19 6 0.2412 -1.4543 3.7318 20 6 1.8397 -1.7368 5.6162 21 7 1.0524 -2.8642 6.1330 22 6 2.5232 -0.5198 3.5777 23 6 1.8169 0.0838 2.3440 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7185 -1.7624 -1.2243 28 1 1.6359 -0.2374 -2.1385 29 1 3.8898 0.3812 -1.3101 30 1 3.9723 -1.1439 -0.3960 31 1 7.2309 -0.9513 -2.1005 32 1 0.5362 -2.0559 1.8286 33 1 1.3117 -2.4519 0.2728 34 1 2.4762 -3.9221 1.5621 35 1 3.4756 -2.4892 1.8768 36 1 1.3731 -3.7653 3.6434 37 1 3.0576 -3.3657 4.0288 38 1 0.1708 -1.0892 2.7072 39 1 -0.3036 -2.3941 3.8209 40 1 -0.1904 -0.7183 4.4101 41 1 2.8869 -1.8703 5.8876 42 1 1.4685 -0.8068 6.0469 43 1 1.1209 -2.9226 7.1380 44 1 0.0891 -2.7971 5.8399 45 1 3.5170 -0.8672 3.2952 46 1 2.6095 0.2386 4.3557 47 1 0.7475 0.1498 2.5438 48 1 2.2064 1.0863 2.1668 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246574691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:37:47 Heat of formation + Delta-G solvation = 14.634185 kcal Electronic energy + Delta-G solvation = -22596.791079 eV Core-core repulsion = 19686.962264 eV Total energy + Delta-G solvation = -2909.828816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.60234 -37.18802 -34.01439 -32.88723 -32.11172 -30.94665 -29.09356 -27.92077 -25.98967 -25.54917 -24.88939 -22.28042 -21.49033 -20.38218 -18.76865 -18.10400 -16.68787 -16.16343 -15.95446 -15.14007 -14.86540 -14.55629 -14.35999 -14.26761 -13.61850 -13.20726 -13.07271 -12.89554 -12.58706 -12.24043 -12.11195 -12.00137 -11.64715 -11.51711 -11.18828 -11.10194 -11.04754 -10.86487 -10.66237 -10.40958 -10.35347 -10.13173 -10.07815 -9.90221 -9.81642 -9.45445 -9.09730 -8.81881 -8.78822 -8.18831 -7.38261 -5.84916 -3.85785 3.38302 3.45706 3.49602 4.38446 4.45237 4.57117 4.74109 4.84624 4.99669 5.29534 5.35662 5.40906 5.50624 5.51804 5.54160 5.56258 5.59854 5.64918 5.70461 5.74488 5.87376 5.90784 5.92854 6.07957 6.15955 6.18846 6.25467 6.34391 6.37865 6.42194 6.45292 6.52981 6.54975 6.70663 6.76441 6.89665 6.99343 7.02764 7.26925 7.36750 7.76622 7.89521 8.03438 8.13388 8.28701 8.61866 9.23766 9.76709 11.26036 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.004765 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.088071 B = 5875.072630 C = 6382.574490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.073 0.927 4 C -0.103 4.103 5 C 0.031 3.969 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.884 3.116 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.534 5.534 15 C 0.046 3.954 16 C -0.121 4.121 17 C -0.088 4.088 18 C -0.054 4.054 19 C -0.176 4.176 20 C 0.071 3.929 21 N -0.848 5.848 22 C -0.109 4.109 23 C 0.065 3.935 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.007 0.993 30 H 0.033 0.967 31 H 0.257 0.743 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.022 0.978 43 H 0.335 0.665 44 H 0.338 0.662 45 H 0.079 0.921 46 H 0.059 0.941 47 H 0.031 0.969 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.750 -0.242 14.640 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.092 0.908 4 C -0.141 4.141 5 C -0.006 4.006 6 C -0.555 4.555 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.258 5.258 15 C -0.080 4.080 16 C -0.159 4.159 17 C -0.126 4.126 18 C -0.054 4.054 19 C -0.232 4.232 20 C -0.060 4.060 21 N -0.377 5.377 22 C -0.148 4.148 23 C -0.064 4.064 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.025 0.975 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.040 0.960 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.597 -0.720 14.219 18.363 hybrid contribution -0.862 0.405 -0.180 0.969 sum -12.459 -0.315 14.039 18.773 Atomic orbital electron populations 1.22518 0.99069 1.01508 1.01102 1.21819 0.90810 0.98214 0.91275 0.90845 1.21748 1.00854 0.98232 0.93220 1.18977 0.88009 0.96616 0.96993 1.21390 0.91545 1.34729 1.07880 0.93174 1.24984 0.97163 0.95848 0.96352 1.69996 1.01809 1.45273 1.36288 0.86661 0.78826 0.79552 0.83679 1.19918 1.21221 1.21159 1.58833 1.62240 1.02446 1.02265 1.22220 0.96530 0.88455 1.00814 1.21437 1.01308 0.99211 0.93928 1.21833 1.00751 0.94912 0.95117 1.20364 0.95461 0.96187 0.93416 1.22880 0.95919 1.00935 1.03453 1.22027 0.98218 0.90883 0.94862 1.58738 1.16206 1.46919 1.15880 1.21511 1.00454 0.96327 0.96470 1.21109 0.97975 0.96820 0.90531 0.92450 0.92780 0.93694 0.93286 0.93577 0.97454 0.94830 0.93363 0.92675 0.90602 0.92481 0.90215 0.92336 0.92637 0.88728 0.92905 0.93896 0.91194 0.96020 0.85286 0.84904 0.90228 0.92233 0.95193 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 8.70 37.16 0.32 -2.21 16 2 C 0.09 1.47 2.28 -67.71 -0.15 1.31 16 3 H 0.07 1.30 7.78 -51.93 -0.40 0.89 16 4 C -0.10 -2.13 4.51 -26.73 -0.12 -2.25 16 5 C 0.03 0.82 4.84 -27.89 -0.14 0.68 16 6 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 10 Si 0.88 22.17 29.54 -169.99 -5.02 17.15 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 N -0.53 -8.67 3.23 -231.99 -0.75 -9.42 16 15 C 0.05 0.69 3.71 -4.52 -0.02 0.68 16 16 C -0.12 -1.84 5.41 -27.40 -0.15 -1.99 16 17 C -0.09 -1.14 4.44 -25.64 -0.11 -1.25 16 18 C -0.05 -0.61 0.56 -154.97 -0.09 -0.70 16 19 C -0.18 -1.87 5.65 37.16 0.21 -1.66 16 20 C 0.07 0.71 5.29 -3.82 -0.02 0.69 16 21 N -0.85 -7.63 9.03 -10.37 -0.09 -7.72 16 22 C -0.11 -1.40 5.03 -27.10 -0.14 -1.54 16 23 C 0.07 0.91 4.56 -6.74 -0.03 0.88 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.73 6.89 -51.93 -0.36 0.37 16 26 H 0.04 0.56 6.92 -51.93 -0.36 0.20 16 27 H 0.05 1.01 6.05 -51.93 -0.31 0.69 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.03 0.94 7.69 -51.93 -0.40 0.54 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.06 0.74 3.91 -51.93 -0.20 0.54 16 33 H 0.08 1.26 5.43 -51.93 -0.28 0.98 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.44 7.26 -51.92 -0.38 1.07 16 36 H 0.06 0.74 7.58 -51.93 -0.39 0.35 16 37 H 0.05 0.75 7.99 -51.93 -0.41 0.33 16 38 H 0.09 1.12 2.68 -51.93 -0.14 0.98 16 39 H 0.05 0.54 7.02 -51.93 -0.36 0.17 16 40 H 0.04 0.42 7.94 -51.93 -0.41 0.01 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.02 0.21 8.02 -51.93 -0.42 -0.21 16 43 H 0.34 2.44 9.08 -39.29 -0.36 2.08 16 44 H 0.34 2.80 7.50 -39.29 -0.29 2.51 16 45 H 0.08 1.19 7.11 -51.93 -0.37 0.82 16 46 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 47 H 0.03 0.39 3.76 -51.93 -0.20 0.19 16 48 H 0.06 0.91 7.77 -51.93 -0.40 0.50 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -30.19 338.76 -9.37 -39.56 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -8.51 Total: 3.14 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -0.84 Total: -21.06 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.11 Total: -43.90 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.19 -9.37 -39.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246574691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.193 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds