Wall clock time and date at job start Mon Mar 30 2020 19:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46853 * 2 1 4 4 C 1.52999 * 109.47198 * 239.99957 * 2 1 3 5 5 C 1.52995 * 109.47405 * 177.17675 * 4 2 1 6 6 C 1.50692 * 109.47532 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00162 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00476 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99586 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00426 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47115 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46890 * 119.99711 * 10 8 6 13 13 H 1.48493 * 109.47245 * 239.99888 * 10 8 6 14 14 N 1.46902 * 109.46921 * 120.00132 * 2 1 3 15 15 C 1.47636 * 110.99996 * 56.39467 * 14 2 1 16 16 C 1.50807 * 108.03563 * 150.30630 * 15 14 2 17 17 C 1.53823 * 111.61907 * 95.06666 * 16 15 14 18 18 C 1.54265 * 112.02649 * 318.99802 * 17 16 15 19 19 C 1.52998 * 108.76873 * 79.32657 * 18 17 16 20 20 C 1.52996 * 108.99078 * 197.74419 * 18 17 16 21 21 N 1.46905 * 109.46928 * 303.11388 * 20 18 17 22 22 C 1.50759 * 112.56290 * 318.60866 * 18 17 16 23 23 C 1.39780 * 111.00190 * 287.48701 * 14 2 1 24 24 H 1.09004 * 109.47519 * 59.99957 * 1 2 3 25 25 H 1.09004 * 109.47437 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47490 * 299.99708 * 1 2 3 27 27 H 1.08997 * 109.47085 * 297.18276 * 4 2 1 28 28 H 1.09003 * 109.46762 * 57.17871 * 4 2 1 29 29 H 1.09006 * 109.47062 * 300.00804 * 5 4 2 30 30 H 1.09000 * 109.46549 * 60.00108 * 5 4 2 31 31 H 0.96998 * 119.99559 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.74375 * 269.94410 * 15 14 2 33 33 H 1.09000 * 109.75044 * 30.61745 * 15 14 2 34 34 H 1.08994 * 109.05357 * 215.61858 * 16 15 14 35 35 H 1.09010 * 109.05496 * 334.59042 * 16 15 14 36 36 H 1.09000 * 108.97578 * 79.68223 * 17 16 15 37 37 H 1.08997 * 108.97975 * 198.40525 * 17 16 15 38 38 H 1.09001 * 109.47106 * 280.06874 * 19 18 17 39 39 H 1.08995 * 109.47049 * 40.07813 * 19 18 17 40 40 H 1.09004 * 109.46676 * 160.07913 * 19 18 17 41 41 H 1.09002 * 109.47668 * 63.11088 * 20 18 17 42 42 H 1.08999 * 109.47553 * 183.11357 * 20 18 17 43 43 H 1.00898 * 110.99957 * 180.02562 * 21 20 18 44 44 H 1.00907 * 110.99791 * 303.95256 * 21 20 18 45 45 H 1.09003 * 109.54388 * 333.00271 * 22 18 17 46 46 H 1.08994 * 109.54456 * 212.82486 * 22 18 17 47 47 H 1.08993 * 109.02577 * 68.55025 * 23 14 2 48 48 H 1.09003 * 109.01719 * 309.72183 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5683 -0.6600 -1.2853 6 6 4.0706 -1.3699 -2.5160 7 1 3.3699 -1.8194 -3.2040 8 6 5.4248 -1.4455 -2.7638 9 7 6.2782 -0.8977 -1.9263 10 14 6.0475 -2.3261 -4.2891 11 1 4.8941 -2.8512 -5.0630 12 1 6.8158 -1.3742 -5.1311 13 1 6.9276 -3.4521 -3.8859 14 7 2.0196 -0.6925 1.1994 15 6 1.4767 -2.0632 1.2776 16 6 2.4834 -2.9237 1.9991 17 6 2.1652 -3.0304 3.5003 18 6 1.7107 -1.6805 4.0928 19 6 0.2412 -1.4543 3.7318 20 6 1.8397 -1.7368 5.6162 21 7 1.0524 -2.8642 6.1330 22 6 2.5232 -0.5198 3.5777 23 6 1.8169 0.0838 2.3440 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7185 -1.7624 -1.2243 28 1 1.6359 -0.2374 -2.1385 29 1 3.8898 0.3812 -1.3101 30 1 3.9723 -1.1439 -0.3960 31 1 7.2309 -0.9513 -2.1005 32 1 0.5362 -2.0559 1.8286 33 1 1.3117 -2.4519 0.2728 34 1 2.4762 -3.9221 1.5621 35 1 3.4756 -2.4892 1.8768 36 1 1.3731 -3.7653 3.6434 37 1 3.0576 -3.3657 4.0288 38 1 0.1708 -1.0892 2.7072 39 1 -0.3036 -2.3941 3.8209 40 1 -0.1904 -0.7183 4.4101 41 1 2.8869 -1.8703 5.8876 42 1 1.4685 -0.8068 6.0469 43 1 1.1209 -2.9226 7.1380 44 1 0.0891 -2.7971 5.8399 45 1 3.5170 -0.8672 3.2952 46 1 2.6095 0.2386 4.3557 47 1 0.7475 0.1498 2.5438 48 1 2.2064 1.0863 2.1668 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246574691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:37:46 Heat of formation + Delta-G solvation = -4.679147 kcal Electronic energy + Delta-G solvation = -22597.628568 eV Core-core repulsion = 19686.962264 eV Total energy + Delta-G solvation = -2910.666305 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.73192 -38.35472 -35.59523 -34.46136 -33.42460 -32.32179 -30.65545 -28.90175 -27.22942 -26.82325 -26.44705 -23.50749 -23.02354 -21.90676 -20.13612 -19.08909 -18.36023 -17.69438 -17.17132 -16.51435 -16.11773 -15.99427 -15.53030 -15.26149 -14.74450 -14.63745 -14.39362 -14.18307 -13.96652 -13.75499 -13.38239 -13.18099 -13.14398 -12.92056 -12.79407 -12.58793 -12.39690 -12.22734 -12.09569 -11.83928 -11.75128 -11.41835 -11.39503 -11.24653 -11.18777 -11.00188 -10.88246 -10.73244 -10.46472 -9.48586 -8.58808 -8.12260 -6.22424 1.39467 1.39900 1.52858 2.44124 3.15429 3.20180 3.68501 3.77514 3.90719 4.01706 4.11301 4.27235 4.27782 4.35826 4.41916 4.46971 4.56229 4.62504 4.67853 4.74985 4.78293 4.79073 4.83491 4.91388 4.99240 5.03612 5.07853 5.10699 5.16761 5.24629 5.29448 5.31805 5.37675 5.44498 5.46052 5.50671 5.60666 5.64010 5.71491 5.93450 6.07337 6.31738 6.36406 6.50531 6.68413 6.83629 6.98855 7.45571 8.99108 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.004765 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.088071 B = 5875.072630 C = 6382.574490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.091 3.909 3 H 0.062 0.938 4 C -0.092 4.092 5 C 0.043 3.957 6 C -0.540 4.540 7 H 0.054 0.946 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.958 3.042 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.280 1.280 14 N -0.557 5.557 15 C 0.052 3.948 16 C -0.118 4.118 17 C -0.079 4.079 18 C -0.050 4.050 19 C -0.170 4.170 20 C 0.077 3.923 21 N -0.854 5.854 22 C -0.105 4.105 23 C 0.064 3.936 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.048 0.952 29 H -0.025 1.025 30 H 0.004 0.996 31 H 0.260 0.740 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.034 0.966 43 H 0.347 0.653 44 H 0.345 0.655 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.055 0.945 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.924 -0.669 15.236 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 H 0.080 0.920 4 C -0.130 4.130 5 C 0.006 3.994 6 C -0.578 4.578 7 H 0.072 0.928 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.783 3.217 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.206 1.206 14 N -0.282 5.282 15 C -0.074 4.074 16 C -0.156 4.156 17 C -0.116 4.116 18 C -0.051 4.051 19 C -0.226 4.226 20 C -0.054 4.054 21 N -0.385 5.385 22 C -0.144 4.144 23 C -0.065 4.065 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.066 0.934 29 H -0.007 1.007 30 H 0.023 0.977 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.791 -1.147 14.824 20.279 hybrid contribution -0.119 0.540 -0.345 0.652 sum -13.909 -0.607 14.479 20.087 Atomic orbital electron populations 1.22369 0.95790 1.02330 1.02483 1.21625 0.93294 0.96835 0.89911 0.92021 1.21568 0.96735 0.99036 0.95621 1.18772 0.91929 0.93765 0.94979 1.21834 0.92167 1.35026 1.08776 0.92799 1.25922 0.97430 0.96567 0.99802 1.70140 1.02225 1.46535 1.38404 0.85501 0.78420 0.78303 0.79432 1.18660 1.20451 1.20556 1.58718 1.63406 1.03138 1.02894 1.22185 0.97459 0.87674 1.00061 1.21390 0.99401 0.98679 0.96115 1.21735 1.00608 0.96320 0.92960 1.20290 0.95942 0.94381 0.94469 1.22771 0.94952 1.01978 1.02934 1.21884 0.98072 0.91921 0.93537 1.58683 1.16548 1.46358 1.16900 1.21470 0.98944 0.97421 0.96553 1.21170 0.99425 0.95956 0.89953 0.91741 0.92173 0.91651 0.93136 0.93353 1.00705 0.97738 0.93136 0.89979 0.92380 0.92891 0.94124 0.91339 0.93697 0.89909 0.91877 0.92182 0.92167 0.94743 0.84021 0.84153 0.93390 0.90450 0.92816 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.34 8.70 71.98 0.63 -3.72 16 2 C 0.09 3.10 2.28 44.91 0.10 3.20 16 3 H 0.06 2.22 7.78 -2.39 -0.02 2.20 16 4 C -0.09 -3.88 4.51 30.59 0.14 -3.75 16 5 C 0.04 2.35 4.84 29.84 0.14 2.50 16 6 C -0.54 -32.05 9.11 25.60 0.23 -31.81 16 7 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 8 C 0.00 0.00 5.46 84.65 0.46 0.46 16 9 N -0.93 -59.14 13.29 21.45 0.28 -58.86 16 10 Si 0.96 46.01 29.54 68.60 2.03 48.03 16 11 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 14 N -0.56 -18.36 3.23 -887.87 -2.87 -21.23 16 15 C 0.05 1.56 3.71 85.45 0.32 1.88 16 16 C -0.12 -3.71 5.41 30.16 0.16 -3.55 16 17 C -0.08 -1.98 4.44 31.30 0.14 -1.84 16 18 C -0.05 -1.07 0.56 -52.48 -0.03 -1.10 16 19 C -0.17 -3.06 5.65 71.98 0.41 -2.65 16 20 C 0.08 1.37 5.29 86.30 0.46 1.83 16 21 N -0.85 -13.08 9.03 -186.71 -1.69 -14.76 16 22 C -0.11 -2.66 5.03 30.35 0.15 -2.51 16 23 C 0.06 1.74 4.56 88.07 0.40 2.14 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.47 6.89 -2.38 -0.02 1.45 16 26 H 0.06 1.42 6.92 -2.39 -0.02 1.40 16 27 H 0.05 2.11 6.05 -2.39 -0.01 2.10 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H -0.03 -1.55 8.14 -2.38 -0.02 -1.56 16 30 H 0.00 0.25 7.69 -2.39 -0.02 0.24 16 31 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.08 2.04 3.91 -2.39 -0.01 2.03 16 33 H 0.06 1.94 5.43 -2.39 -0.01 1.93 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.04 1.59 7.26 -2.38 -0.02 1.57 16 36 H 0.07 1.61 7.58 -2.39 -0.02 1.59 16 37 H 0.04 1.22 7.99 -2.39 -0.02 1.20 16 38 H 0.08 1.69 2.68 -2.39 -0.01 1.69 16 39 H 0.06 1.04 7.02 -2.39 -0.02 1.02 16 40 H 0.06 0.92 7.94 -2.39 -0.02 0.90 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.03 0.54 8.02 -2.39 -0.02 0.53 16 43 H 0.35 4.13 9.08 -89.70 -0.81 3.31 16 44 H 0.34 4.56 7.50 -89.69 -0.67 3.89 16 45 H 0.05 1.51 7.11 -2.39 -0.02 1.50 16 46 H 0.08 1.66 7.68 -2.39 -0.02 1.64 16 47 H 0.05 1.24 3.76 -2.39 -0.01 1.23 16 48 H 0.05 1.51 7.77 -2.39 -0.02 1.49 16 Total: -1.00 -67.24 338.76 0.93 -66.32 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.54 Total: 19.43 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 3.71 Total: -38.93 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -4.27 Total: -94.85 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -67.24 0.93 -66.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246574691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.638 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds