Wall clock time and date at job start Mon Mar 30 2020 19:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.47215 * 2 1 4 4 C 1.53001 * 109.46907 * 240.00221 * 2 1 3 5 5 C 1.52998 * 109.47122 * 173.90701 * 4 2 1 6 6 C 1.50698 * 109.47332 * 185.11668 * 5 4 2 7 7 H 1.08009 * 119.99759 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00438 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99722 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00091 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47080 * 90.00333 * 10 8 6 12 12 H 1.48501 * 109.46846 * 209.99844 * 10 8 6 13 13 H 1.48497 * 109.47395 * 329.99688 * 10 8 6 14 14 N 1.46900 * 109.47297 * 120.00378 * 2 1 3 15 15 C 1.48008 * 110.99829 * 342.88695 * 14 2 1 16 16 C 1.50441 * 112.82054 * 191.34700 * 15 14 2 17 17 C 1.54310 * 108.49299 * 93.73633 * 16 15 14 18 18 C 1.45877 * 112.18855 * 281.44977 * 17 16 15 19 19 C 1.54310 * 112.18346 * 61.11822 * 18 17 16 20 20 C 1.53002 * 109.63020 * 41.18366 * 19 18 17 21 21 C 1.53000 * 109.63612 * 161.57511 * 19 18 17 22 22 N 1.46908 * 109.47158 * 299.60894 * 21 19 18 23 23 C 1.48001 * 110.99804 * 214.17086 * 14 2 1 24 24 H 1.08999 * 109.46389 * 300.27728 * 1 2 3 25 25 H 1.08992 * 109.46997 * 60.27440 * 1 2 3 26 26 H 1.08992 * 109.46997 * 180.28075 * 1 2 3 27 27 H 1.09003 * 109.46774 * 293.90627 * 4 2 1 28 28 H 1.09001 * 109.47183 * 53.90379 * 4 2 1 29 29 H 1.09005 * 109.47085 * 305.11421 * 5 4 2 30 30 H 1.09003 * 109.47278 * 65.11759 * 5 4 2 31 31 H 0.96996 * 120.00132 * 180.02562 * 9 8 6 32 32 H 1.08997 * 108.81215 * 70.48326 * 15 14 2 33 33 H 1.09002 * 108.72192 * 312.14909 * 15 14 2 34 34 H 1.08998 * 109.63300 * 334.03220 * 16 15 14 35 35 H 1.09000 * 109.63382 * 213.43703 * 16 15 14 36 36 H 1.08995 * 108.93672 * 160.75615 * 17 16 15 37 37 H 1.08994 * 108.93622 * 42.14861 * 17 16 15 38 38 H 1.09003 * 108.94304 * 300.42509 * 18 17 16 39 39 H 1.08999 * 108.94286 * 181.81683 * 18 17 16 40 40 H 1.09002 * 109.47184 * 100.33261 * 20 19 18 41 41 H 1.08993 * 109.47283 * 340.32487 * 20 19 18 42 42 H 1.08999 * 109.46864 * 220.32733 * 20 19 18 43 43 H 1.09001 * 109.47103 * 59.60438 * 21 19 18 44 44 H 1.08991 * 109.47647 * 179.60624 * 21 19 18 45 45 H 1.00893 * 110.99770 * 179.97438 * 22 21 19 46 46 H 1.00899 * 110.99375 * 303.95150 * 22 21 19 47 47 H 1.08994 * 108.80872 * 323.96031 * 23 14 2 48 48 H 1.09007 * 108.80716 * 205.69553 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5623 -0.5900 -1.3282 6 6 4.0520 -1.1905 -2.6208 7 1 3.3478 -1.6229 -3.3163 8 6 5.3988 -1.1879 -2.9156 9 7 6.2563 -0.6609 -2.0690 10 14 6.0057 -1.9329 -4.5175 11 1 6.0261 -0.8882 -5.5728 12 1 7.3771 -2.4694 -4.3256 13 1 5.0966 -3.0331 -4.9275 14 7 2.0198 -0.6926 1.1994 15 6 0.9515 -0.8106 2.2170 16 6 1.4682 -1.2629 3.5555 17 6 1.7628 -0.0147 4.4137 18 6 3.0261 0.6178 4.0504 19 6 3.0341 1.1046 2.5861 20 6 1.6836 1.7392 2.2480 21 6 4.1487 2.1348 2.3928 22 7 3.9136 3.2827 3.2790 23 6 3.2744 -0.0800 1.6904 24 1 -0.3632 0.5182 0.8875 25 1 -0.3633 0.5095 -0.8924 26 1 -0.3633 -1.0276 0.0050 27 1 1.7685 -1.7755 -1.1964 28 1 1.5903 -0.2742 -2.1359 29 1 3.8387 0.4637 -1.2895 30 1 4.0164 -1.1159 -0.4884 31 1 7.2038 -0.6587 -2.2766 32 1 0.2095 -1.5277 1.8660 33 1 0.4721 0.1611 2.3353 34 1 2.3839 -1.8383 3.4193 35 1 0.7160 -1.8779 4.0497 36 1 1.8029 -0.3081 5.4626 37 1 0.9554 0.7051 4.2799 38 1 3.8342 -0.1005 4.1887 39 1 3.1967 1.4705 4.7076 40 1 1.7695 2.8247 2.2978 41 1 0.9339 1.4008 2.9632 42 1 1.3852 1.4441 1.2421 43 1 5.1095 1.6802 2.6344 44 1 4.1565 2.4716 1.3563 45 1 4.6371 3.9775 3.1702 46 1 3.0011 3.6822 3.1186 47 1 3.8673 0.2412 0.8341 48 1 3.8387 -0.8305 2.2441 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246594335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:37:54 Heat of formation + Delta-G solvation = 9.727939 kcal Electronic energy + Delta-G solvation = -23015.111520 eV Core-core repulsion = 20105.069954 eV Total energy + Delta-G solvation = -2910.041566 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.00100 -37.75963 -35.96245 -35.04922 -32.79363 -32.52880 -31.04858 -29.17605 -27.27865 -26.98187 -25.32017 -24.32375 -23.06721 -21.31687 -20.40042 -19.34355 -18.45412 -17.60015 -16.89664 -16.79665 -16.57364 -15.98572 -15.64969 -15.40175 -14.83534 -14.51911 -14.28894 -14.05466 -13.75350 -13.64824 -13.34543 -13.26240 -12.92985 -12.88665 -12.85521 -12.72733 -12.37835 -12.24317 -12.02647 -11.96364 -11.85383 -11.53997 -11.47020 -11.23282 -11.14214 -11.01126 -10.87157 -10.61032 -10.48293 -9.59763 -8.72770 -8.15561 -6.25728 1.38002 1.39464 1.50494 2.42005 3.02524 3.16477 3.56692 3.72611 3.90014 3.95517 4.07387 4.16943 4.26338 4.31159 4.43012 4.48377 4.54415 4.62853 4.65657 4.69040 4.73798 4.84406 4.90366 4.91627 4.99963 5.03493 5.11470 5.14314 5.16257 5.22367 5.22582 5.32960 5.38247 5.44543 5.48395 5.52163 5.56346 5.57803 5.69153 5.88195 5.95416 6.17485 6.33501 6.43220 6.54823 6.59498 6.92491 7.42294 8.94937 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.020543 B = 0.005623 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.658269 B = 4978.265025 C = 5605.786190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.086 3.914 3 H 0.046 0.954 4 C -0.092 4.092 5 C 0.040 3.960 6 C -0.543 4.543 7 H 0.053 0.947 8 C 0.001 3.999 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.266 1.266 14 N -0.546 5.546 15 C 0.039 3.961 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.096 4.096 19 C -0.072 4.072 20 C -0.189 4.189 21 C 0.077 3.923 22 N -0.839 5.839 23 C 0.072 3.928 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.046 0.954 29 H -0.022 1.022 30 H 0.003 0.997 31 H 0.261 0.739 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.007 0.993 45 H 0.346 0.654 46 H 0.344 0.656 47 H 0.048 0.952 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.882 5.481 13.045 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 H 0.063 0.937 4 C -0.130 4.130 5 C 0.003 3.997 6 C -0.581 4.581 7 H 0.071 0.929 8 C -0.196 4.196 9 N -0.570 5.570 10 Si 0.784 3.216 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.190 1.190 14 N -0.271 5.271 15 C -0.086 4.086 16 C -0.158 4.158 17 C -0.155 4.155 18 C -0.133 4.133 19 C -0.074 4.074 20 C -0.245 4.245 21 C -0.054 4.054 22 N -0.372 5.372 23 C -0.057 4.057 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.065 0.935 29 H -0.004 1.004 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.026 0.974 45 H 0.159 0.841 46 H 0.160 0.840 47 H 0.067 0.933 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.531 4.520 13.544 18.353 hybrid contribution 1.013 0.863 -1.774 2.218 sum -10.518 5.383 11.770 16.677 Atomic orbital electron populations 1.22189 0.93319 1.02821 1.02694 1.21754 0.95327 0.94871 0.90201 0.93676 1.21569 0.96500 0.99218 0.95698 1.18919 0.92267 0.93633 0.94914 1.21798 0.92688 1.38190 1.05449 0.92899 1.25907 0.97271 0.96001 1.00436 1.70099 1.02475 1.46763 1.37692 0.85542 0.77543 0.78896 0.79628 1.19803 1.20783 1.19014 1.61747 1.05022 1.53898 1.06423 1.22465 0.93399 1.01778 0.90985 1.21456 1.01501 0.97954 0.94912 1.20658 0.98082 0.96992 0.99736 1.20457 0.97959 1.00129 0.94801 1.20762 0.95503 0.94478 0.96618 1.23118 0.96878 1.00314 1.04198 1.21664 0.98317 0.92426 0.93028 1.58773 1.08223 1.11981 1.58182 1.21916 0.91869 0.94284 0.97619 0.90476 0.91846 0.91694 0.93679 0.93503 1.00377 0.97895 0.93063 0.91403 0.91067 0.93171 0.89718 0.91155 0.90569 0.94160 0.90418 0.92749 0.88919 0.90623 0.92441 0.97445 0.84087 0.84050 0.93344 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 7.68 71.99 0.55 -3.33 16 2 C 0.09 2.93 1.57 44.92 0.07 3.00 16 3 H 0.05 1.64 5.76 -2.39 -0.01 1.63 16 4 C -0.09 -3.96 4.82 30.59 0.15 -3.81 16 5 C 0.04 2.15 3.55 29.85 0.11 2.26 16 6 C -0.54 -32.17 9.11 25.60 0.23 -31.94 16 7 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 8 C 0.00 0.08 5.46 84.65 0.46 0.54 16 9 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 10 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 N -0.55 -18.16 4.37 -874.96 -3.82 -21.98 16 15 C 0.04 0.98 3.74 85.26 0.32 1.30 16 16 C -0.12 -2.72 5.63 30.21 0.17 -2.55 16 17 C -0.12 -2.36 5.20 28.85 0.15 -2.21 16 18 C -0.10 -2.33 4.43 28.85 0.13 -2.20 16 19 C -0.07 -1.97 0.59 -52.56 -0.03 -2.00 16 20 C -0.19 -4.47 7.07 71.98 0.51 -3.96 16 21 C 0.08 2.23 5.47 86.30 0.47 2.71 16 22 N -0.84 -18.48 8.62 -186.71 -1.61 -20.09 16 23 C 0.07 2.55 3.72 85.26 0.32 2.87 16 24 H 0.08 1.60 5.59 -2.39 -0.01 1.59 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.62 7.35 -2.39 -0.02 1.60 16 27 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H -0.02 -1.30 7.86 -2.38 -0.02 -1.32 16 30 H 0.00 0.16 6.54 -2.39 -0.02 0.15 16 31 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.07 1.64 6.99 -2.39 -0.02 1.62 16 33 H 0.07 1.55 2.51 -2.39 -0.01 1.54 16 34 H 0.05 1.38 7.08 -2.39 -0.02 1.36 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.35 5.53 -2.39 -0.01 1.34 16 38 H 0.04 1.09 7.52 -2.39 -0.02 1.07 16 39 H 0.08 1.84 7.15 -2.39 -0.02 1.82 16 40 H 0.05 1.16 5.76 -2.39 -0.01 1.14 16 41 H 0.09 1.86 3.26 -2.39 -0.01 1.86 16 42 H 0.08 2.01 2.01 -2.39 0.00 2.01 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.01 0.24 8.10 -2.39 -0.02 0.22 16 45 H 0.35 6.70 9.08 -89.70 -0.81 5.89 16 46 H 0.34 6.67 6.79 -89.69 -0.61 6.07 16 47 H 0.05 2.14 4.87 -2.39 -0.01 2.13 16 48 H 0.05 1.89 6.59 -2.38 -0.02 1.88 16 Total: -1.00 -65.89 326.43 0.04 -65.85 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.45 Total: 25.35 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 3.61 Total: -39.31 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -5.15 Total: -99.63 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -65.89 0.04 -65.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246594335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.577 kcal (2) G-P(sol) polarization free energy of solvation -65.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds